Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 0.0e+00 1165.2 567 100.0
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.9e-309 1065.1 568 90.5
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 1.2e-306 1055.8 572 90.2
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 6.3e-305 1050.0 592 86.5
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.4e-304 1048.9 569 88.8
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 3.6e-300 1034.2 569 87.5
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 4.7e-300 1033.9 568 87.3
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 5.2e-299 1030.4 569 87.5
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.0e-298 1028.5 569 87.3
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 3.4e-298 1027.7 570 86.0
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 7.0e-296 1020.0 600 82.8
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 1.6e-295 1018.8 571 86.3
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 7.8e-295 1016.5 573 85.7
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 2.9e-294 1014.6 570 86.1
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 1.5e-293 1012.3 570 85.8
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 2.5e-293 1011.5 571 86.0
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 4.3e-293 1010.7 551 87.7
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 5.6e-293 1010.4 568 84.9
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 7.3e-293 1010.0 568 84.9
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-292 1009.2 568 84.9
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-292 1009.2 568 84.9
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 1.6e-292 1008.8 568 84.5
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-292 1008.4 568 84.9
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 2.8e-292 1008.1 550 86.9
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 2.8e-292 1008.1 570 85.3
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.8e-292 1008.1 558 86.7
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 3.6e-292 1007.7 568 84.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 6.1e-292 1006.9 550 86.9
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 8.0e-292 1006.5 569 85.2
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 1.0e-291 1006.1 568 85.2
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.0e-291 1006.1 551 87.3
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 2.3e-291 1005.0 568 84.3
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 5.2e-291 1003.8 562 85.1
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 5.2e-291 1003.8 566 85.0
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 6.8e-291 1003.4 550 86.5
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 6.8e-291 1003.4 569 85.1
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 8.9e-291 1003.0 569 84.9
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 551 87.1
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.5e-290 1002.3 568 84.0
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 1.5e-290 1002.3 568 84.2
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 2.6e-290 1001.5 567 85.0
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.6e-290 1001.5 568 84.0
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 9.8e-290 999.6 561 85.0
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 2.9e-289 998.0 568 82.9
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 8.3e-289 996.5 561 84.8
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.9e-288 995.3 551 85.8
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 4.1e-288 994.2 564 84.6
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 9.2e-288 993.0 569 83.7
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 9.2e-288 993.0 551 85.7
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.6e-287 992.3 568 83.3
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 2.0e-287 991.9 551 85.5
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.5e-287 991.1 569 83.5
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 6.0e-287 990.3 561 84.7
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 6.0e-287 990.3 566 83.9
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.0e-286 989.6 574 83.4
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.3e-286 988.4 568 82.9
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 3.3e-285 984.6 550 85.3
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 7.3e-285 983.4 574 82.4
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 2.1e-284 981.9 560 84.1
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 3.6e-284 981.1 574 81.7
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 1.4e-283 979.2 569 82.6
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 2.0e-282 975.3 561 83.2
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.4e-282 974.5 551 84.4
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 4.4e-282 974.2 566 83.4
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.1e-280 967.6 571 81.8
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 9.2e-280 966.5 563 81.5
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 3.9e-278 961.1 549 82.3
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 6.6e-278 960.3 549 82.0
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 8.6e-278 959.9 549 82.3
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 2.5e-277 958.4 549 82.3
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 2.1e-276 955.3 568 79.8
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 2.1e-276 955.3 549 81.6
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 2.1e-276 955.3 543 83.4
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.8e-276 954.9 551 81.9
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 3.6e-276 954.5 549 81.8
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.8e-275 952.2 549 82.0
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 2.3e-275 951.8 549 81.8
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 2.3e-275 951.8 551 81.5
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 6.8e-275 950.3 549 81.1
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.2e-274 949.5 549 81.8
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 3.4e-274 948.0 543 82.9
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 4.4e-274 947.6 543 83.2
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 9.9e-274 946.4 570 79.6
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 9.9e-274 946.4 553 82.3
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 1.7e-273 945.7 561 80.0
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.9e-273 944.9 569 79.6
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 4.9e-273 944.1 517 87.0
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 7.1e-272 940.3 552 81.3
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 7.1e-272 940.3 554 82.3
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 9.2e-272 939.9 519 88.1
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.0e-270 936.4 568 82.0
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 2.5e-269 931.8 557 79.7
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.8e-268 928.3 570 81.2
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 8.9e-267 923.3 549 80.0
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 2.9e-265 918.3 569 77.9
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 7.8e-263 910.2 572 76.9
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.1e-256 889.8 549 79.1
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 6.0e-255 884.0 569 76.8
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 1.0e-254 883.2 545 74.9
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 3.9e-254 881.3 551 76.8
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 2.5e-253 878.6 546 77.1
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 8.1e-252 873.6 542 76.8
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 1.1e-251 873.2 549 75.6
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-251 872.8 542 76.6
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 6.9e-251 870.5 494 84.0
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 5.8e-250 867.5 568 77.1
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 3.0e-246 855.1 566 74.2
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 6.7e-246 854.0 558 76.2
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.9e-245 852.4 455 91.0
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 3.0e-238 828.6 568 73.1
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 3.9e-238 828.2 548 71.2
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 4.2e-232 808.1 506 76.5
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 1.3e-228 796.6 562 68.9
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.1e-224 783.5 556 66.9
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 2.5e-224 782.3 424 88.4
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 4.2e-224 781.6 423 88.9
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 2.5e-221 772.3 544 68.2
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.1e-216 756.9 537 67.8
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 1.4e-211 740.0 548 65.7
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 3.2e-208 728.8 606 64.7
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.7e-207 725.7 533 65.1
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.4e-205 717.6 538 67.1
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.4e-205 717.6 538 67.1
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 4.3e-176 622.1 569 61.0
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 3.0e-169 599.4 334 85.6
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 4.3e-168 595.5 330 87.0
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.9e-147 526.9 292 86.0
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.9e-144 516.9 553 49.9
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 8.7e-137 491.5 309 77.0
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 8.1e-127 458.4 303 72.3
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.5e-125 454.1 352 67.6
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 6.5e-100 369.0 199 87.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.7e-90 337.0 510 43.1
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 5.4e-70 269.6 203 64.0
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.2e-66 258.5 332 44.0
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.8e-62 244.6 133 88.0
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 1.2e-61 241.9 139 84.2
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.1e-51 208.8 130 76.9
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 4.4e-48 196.8 129 70.5
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 2.2e-47 194.5 137 66.4
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.9e-46 191.4 109 77.1
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 9.2e-46 189.1 119 75.6
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.2e-45 188.7 111 76.6
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 7.8e-45 186.0 127 67.7
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 7.8e-45 186.0 127 67.7
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 2.8e-42 177.6 120 67.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 2.8e-42 177.6 120 67.5
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 2.0e-40 171.4 119 66.4
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 2.0e-40 171.4 119 66.4
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 1.4e-38 165.2 95 78.9
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 9.6e-35 152.5 76 89.5
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.6e-29 135.2 79 81.0
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.9e-25 119.8 86 68.6
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.2e-23 114.8 121 49.6
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 2.2e-23 114.8 118 47.5
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 2.2e-23 114.8 189 40.7
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.6e-21 108.6 60 80.0
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 4.5e-16 90.5 63 68.3


User provided reference genes

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