Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 4.1e-133 478.0 233 100.0
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 2.8e-97 359.0 236 73.3
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 1.1e-93 347.1 230 69.1
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 5.4e-93 344.7 236 71.6
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 1.2e-92 343.6 236 72.0
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 5.6e-90 334.7 230 69.6
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 9.5e-90 334.0 234 68.8
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 2.8e-89 332.4 232 70.3
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 3.6e-89 332.0 231 70.1
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 8.1e-89 330.9 223 70.9
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 3.4e-87 325.5 234 70.5
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 2.9e-86 322.4 235 67.2
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 8.3e-86 320.9 232 67.2
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 1.1e-85 320.5 240 64.2
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 1.9e-85 319.7 236 66.5
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 6.0e-84 314.7 229 64.2
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 6.0e-84 314.7 232 63.4
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 1.0e-83 313.9 214 67.8
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 2.3e-83 312.8 233 65.7
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 6.6e-83 311.2 227 69.2
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 1.1e-82 310.5 238 61.8
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 1.5e-82 310.1 231 68.0
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.5e-82 309.3 222 68.9
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 4.3e-82 308.5 239 64.0
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 7.3e-82 307.8 226 67.3
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 1.2e-81 307.0 241 65.1
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 2.8e-81 305.8 242 64.9
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 4.7e-81 305.1 214 68.2
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 2.3e-80 302.8 220 65.9
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 2.3e-80 302.8 214 67.8
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 3.1e-80 302.4 206 67.5
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 4.0e-80 302.0 214 67.8
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 1.2e-79 300.4 235 61.3
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 4.4e-79 298.5 236 63.6
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 5.8e-79 298.1 236 62.7
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 9.9e-79 297.4 222 65.8
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 1.7e-78 296.6 208 68.8
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 2.2e-78 296.2 236 61.0
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 2.2e-78 296.2 244 60.2
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 6.4e-78 294.7 231 65.4
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 8.4e-78 294.3 224 66.5
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 1.1e-77 293.9 207 65.2
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 1.4e-77 293.5 232 61.6
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 1.4e-77 293.5 212 63.7
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.9e-77 293.1 243 60.5
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 3.2e-77 292.4 239 60.7
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 7.1e-77 291.2 242 59.1
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 4.6e-76 288.5 235 61.7
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 4.6e-76 288.5 238 60.9
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 4.6e-76 288.5 237 59.5
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 1.0e-75 287.3 238 59.7
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 3.0e-75 285.8 201 67.2
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 3.0e-75 285.8 238 58.8
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 8.6e-75 284.3 220 60.9
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 1.5e-74 283.5 210 65.7
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 4.3e-74 282.0 226 64.2
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 5.6e-74 281.6 221 60.6
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 5.6e-74 281.6 245 56.7
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 7.3e-74 281.2 227 59.9
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 9.6e-74 280.8 211 63.5
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 1.8e-72 276.6 221 59.7
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.2e-71 273.9 223 59.2
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 2.0e-71 273.1 236 59.7
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 2.6e-71 272.7 256 56.6
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 7.6e-71 271.2 223 59.2
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.3e-70 270.4 222 60.4
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 2.9e-70 269.2 219 61.2
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 3.8e-70 268.9 248 56.0
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 3.8e-70 268.9 200 63.0
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 1.6e-68 263.5 206 62.1
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 3.9e-67 258.8 235 54.9
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 1.9e-66 256.5 219 57.5
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 8.1e-65 251.1 201 61.7
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.8e-64 250.0 245 53.9
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 7.1e-61 238.0 203 53.7
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 9.3e-61 237.7 243 52.3
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 2.7e-60 236.1 220 53.2
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 7.9e-60 234.6 242 48.8
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 1.5e-58 230.3 191 57.6
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 2.8e-57 226.1 202 55.0
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 2.8e-57 226.1 204 54.4
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 4.8e-57 225.3 202 55.0
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 4.8e-57 225.3 187 57.2
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.4e-56 223.8 212 53.8
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 5.3e-56 221.9 274 47.1
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.5e-55 220.3 202 54.5
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.5e-55 220.3 204 52.9
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 2.0e-55 219.9 256 48.0
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 2.6e-55 219.5 261 48.3
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 7.6e-55 218.0 259 47.1
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 9.9e-55 217.6 272 46.7
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 1.3e-54 217.2 272 46.0
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 1.9e-53 213.4 212 49.1
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 1.2e-52 210.7 247 45.3
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 2.1e-52 209.9 273 45.1
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 3.5e-52 209.1 277 45.5
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 3.5e-52 209.1 277 45.5
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 7.9e-52 208.0 277 44.4
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 7.9e-52 208.0 277 44.4
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 1.0e-51 207.6 275 45.5
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 1.0e-51 207.6 277 45.1
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 5.1e-51 205.3 235 52.8
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 1.1e-48 197.6 214 49.1
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 3.4e-47 192.6 195 48.7
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.0e-46 191.0 203 49.8
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-42 177.2 203 48.8
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.5e-42 177.2 196 45.4
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 1.9e-42 176.8 137 65.0
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 2.2e-41 173.3 157 58.6
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 2.8e-41 172.9 122 72.1
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 3.1e-40 169.5 196 43.9
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 5.3e-40 168.7 202 46.5
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 2.6e-39 166.4 143 60.8
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.2e-38 163.3 190 50.5
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 1.3e-30 137.5 220 41.4
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 3.8e-30 136.0 178 45.5
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.8e-27 127.1 238 34.9
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 3.9e-27 125.9 221 35.3
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 3.3e-26 122.9 211 37.0
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 4.4e-26 122.5 275 32.7
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 2.8e-25 119.8 211 36.0
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 1.2e-23 114.4 227 33.5
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 1.9e-21 107.1 119 44.5
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 5.5e-21 105.5 224 33.5
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 1.7e-14 84.0 56 64.3
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 3.8e-14 82.8 100 44.0
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 6.5e-14 82.0 272 27.9
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 1.4e-11 74.3 58 51.7
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 5.7e-10 68.9 106 40.6
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 7.5e-10 68.6 175 30.3
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 7.0e-08 62.0 142 29.6


User provided reference genes

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