Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.0e-119 431.4 214 100.0
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 4.3e-105 384.8 202 95.5
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 5.9e-86 321.2 188 83.5
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 2.6e-78 295.8 192 76.0
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 1.4e-74 283.5 194 70.6
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 1.8e-71 273.1 192 69.3
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 4.1e-71 271.9 194 71.1
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 5.9e-70 268.1 190 71.1
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 2.9e-69 265.8 183 72.1
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 6.5e-69 264.6 184 69.6
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 8.5e-69 264.2 184 70.7
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 1.1e-68 263.8 193 68.4
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.5e-68 263.5 182 70.3
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 1.9e-68 263.1 189 67.7
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 2.5e-68 262.7 192 70.3
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 3.2e-68 262.3 190 70.0
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.2e-68 261.9 182 70.3
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 5.5e-68 261.5 192 68.8
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 7.2e-68 261.2 192 69.8
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 1.2e-67 260.4 184 68.5
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 3.6e-67 258.8 194 68.0
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 3.6e-67 258.8 181 70.7
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.6e-67 258.8 182 69.2
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 4.7e-67 258.5 192 67.2
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 1.0e-66 257.3 192 66.7
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 1.4e-66 256.9 189 68.3
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 3.0e-66 255.8 194 66.5
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 4.0e-66 255.4 189 64.6
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 4.0e-66 255.4 181 70.7
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.2e-66 255.0 182 67.6
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 6.7e-66 254.6 189 64.0
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.8e-66 254.2 182 67.0
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 1.1e-65 253.8 189 65.1
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.1e-65 253.8 204 66.2
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.1e-65 253.8 204 66.2
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.5e-65 253.4 188 63.8
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 1.5e-65 253.4 180 67.8
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.0e-65 253.1 182 67.6
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.3e-65 252.3 182 67.0
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.3e-65 252.3 182 67.0
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 3.3e-65 252.3 171 72.5
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 5.7e-65 251.5 184 64.1
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 5.7e-65 251.5 203 65.5
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.7e-65 251.5 182 66.5
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.3e-64 250.4 184 66.8
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 1.7e-64 250.0 189 64.6
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 1.1e-63 247.3 174 69.0
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 1.1e-63 247.3 191 66.0
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 1.8e-63 246.5 194 64.4
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 2.4e-63 246.1 194 61.3
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 4.1e-63 245.4 182 68.1
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 4.1e-63 245.4 182 65.9
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 7.0e-63 244.6 189 61.9
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.6e-62 243.4 189 64.6
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.6e-62 243.4 189 61.9
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 1.6e-62 243.4 184 62.5
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 2.7e-62 242.7 197 62.9
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 2.7e-62 242.7 189 61.9
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 3.5e-62 242.3 193 64.2
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 4.5e-62 241.9 193 63.2
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 1.0e-61 240.7 184 64.7
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 3.8e-61 238.8 188 63.8
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 3.8e-61 238.8 186 62.4
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 5.0e-61 238.4 181 63.0
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.1e-60 237.3 181 63.0
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 1.5e-60 236.9 190 61.1
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 1.9e-60 236.5 185 66.5
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 2.5e-60 236.1 187 63.6
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 4.2e-60 235.3 182 63.2
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 4.2e-60 235.3 193 61.1
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 8.0e-59 231.1 181 61.9
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 4.0e-58 228.8 182 62.6
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 6.8e-58 228.0 189 62.4
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 1.2e-57 227.3 182 62.1
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 1.5e-57 226.9 181 60.8
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.5e-57 226.9 181 60.8
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.5e-57 226.9 187 61.5
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 2.6e-57 226.1 181 61.9
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 7.5e-57 224.6 169 62.7
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 1.3e-56 223.8 188 58.0
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 3.7e-56 222.2 179 59.8
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 3.7e-56 222.2 181 61.3
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 3.7e-56 222.2 189 63.0
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 4.8e-56 221.9 181 61.9
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 6.3e-56 221.5 183 61.2
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 6.3e-56 221.5 183 61.2
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 2.4e-55 219.5 184 61.4
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 3.1e-55 219.2 181 61.3
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 4.1e-55 218.8 181 60.8
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.4e-55 218.4 181 59.1
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.4e-55 218.4 181 59.1
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.4e-55 218.4 181 59.1
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 5.4e-55 218.4 181 59.1
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.0e-53 211.8 182 59.3
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 1.5e-49 200.3 187 57.8
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.3e-48 197.2 195 57.4
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.8e-47 193.4 182 55.5
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 6.6e-45 184.9 159 60.4
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 3.3e-44 182.6 171 55.0
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 4.3e-44 182.2 192 51.6
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 6.4e-40 168.3 129 64.3
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 2.4e-39 166.4 183 47.5
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 9.2e-39 164.5 132 65.2
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.0e-37 161.0 182 46.7
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 1.3e-37 160.6 186 47.3
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 3.9e-37 159.1 181 48.6
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.3e-36 156.0 115 67.8
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.3e-36 154.8 115 67.8
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 9.5e-36 154.5 173 49.1
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 6.2e-35 151.8 181 44.2
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.0e-34 151.0 180 47.2
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.5e-33 144.8 108 68.5
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 2.4e-31 139.8 120 60.0
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 3.6e-27 125.9 89 68.5
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 8.1e-27 124.8 106 59.4
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 7.1e-23 111.7 177 40.7
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 1.2e-19 100.9 85 55.3
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 1.2e-19 100.9 85 55.3
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 3.6e-19 99.4 250 32.0
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 8.1e-19 98.2 91 52.7
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 2.3e-18 96.7 173 39.9
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 1.7e-13 80.5 175 31.4
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 2.0e-09 67.0 125 32.0
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 2.4e-07 60.1 147 32.0
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 2.4e-07 60.1 57 52.6
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.2e-07 59.7 39 69.2
MCO05G527 Micromonas commoda HOM05D014289 ORTHO05D018957 3.2e-07 59.7 116 40.5


User provided reference genes

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