Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.0e-185 653.3 339 100.0
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 3.3e-184 648.3 337 99.4
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 1.2e-162 576.6 340 88.5
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 7.7e-157 557.4 336 85.1
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 1.5e-152 543.1 339 82.3
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 4.1e-150 535.0 330 83.3
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 5.3e-150 534.6 338 81.4
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 1.6e-149 533.1 335 82.4
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 7.7e-149 530.8 340 82.4
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 1.0e-148 530.4 335 81.5
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 1.0e-148 530.4 330 81.8
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 1.7e-148 529.6 330 81.8
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 2.2e-148 529.3 342 80.4
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 1.9e-147 526.2 330 82.4
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.9e-147 526.2 330 81.5
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 5.5e-147 524.6 333 81.4
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 5.5e-147 524.6 335 80.9
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 4.0e-145 518.5 341 78.3
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 3.4e-144 515.4 341 76.5
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 5.7e-144 514.6 324 80.9
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 9.8e-144 513.8 329 79.0
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 1.7e-143 513.1 342 78.7
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 2.2e-143 512.7 336 79.2
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 8.3e-143 510.8 332 78.6
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 1.6e-141 506.5 360 77.8
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 2.0e-141 506.1 325 80.6
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 5.9e-141 504.6 329 77.8
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 7.7e-141 504.2 336 76.8
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 7.7e-141 504.2 338 77.2
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 7.7e-141 504.2 337 77.7
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 1.7e-140 503.1 337 77.4
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 2.5e-139 499.2 333 77.8
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 5.5e-139 498.0 336 73.8
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 5.5e-139 498.0 334 77.2
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 1.2e-138 496.9 348 76.4
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 1.2e-138 496.9 328 78.4
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 2.8e-138 495.7 328 78.7
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 4.7e-138 495.0 328 78.0
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 8.9e-137 490.7 335 74.6
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.7e-135 486.5 330 76.4
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 2.2e-135 486.1 342 74.3
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.8e-135 485.7 330 76.7
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 2.8e-135 485.7 336 74.1
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 1.1e-134 483.8 338 73.7
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 3.1e-134 482.3 340 73.5
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 4.1e-134 481.9 314 79.6
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 5.4e-134 481.5 335 74.9
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 1.2e-133 480.3 410 67.6
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 2.0e-133 479.6 335 73.7
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 1.3e-132 476.9 328 75.0
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 2.9e-132 475.7 276 87.7
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 3.8e-132 475.3 349 71.1
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 8.6e-132 474.2 335 73.7
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 1.5e-131 473.4 347 71.5
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.3e-131 472.2 319 78.1
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 4.3e-131 471.9 335 75.5
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 4.3e-131 471.9 326 73.9
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 5.6e-131 471.5 335 75.5
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 9.5e-131 470.7 328 73.8
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 1.6e-130 469.9 328 73.5
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 1.6e-130 469.9 336 73.2
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 2.1e-130 469.5 328 73.8
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 3.6e-130 468.8 328 73.8
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 3.6e-130 468.8 328 73.8
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 3.6e-130 468.8 328 72.9
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 6.1e-130 468.0 328 73.5
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 8.0e-130 467.6 334 73.4
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.4e-129 466.8 334 73.7
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 3.0e-129 465.7 346 71.4
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 6.8e-129 464.5 337 72.7
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 6.8e-129 464.5 368 69.3
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 8.9e-129 464.2 311 74.6
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 8.9e-129 464.2 308 74.7
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.2e-128 463.8 305 78.7
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 1.2e-128 463.8 330 72.7
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 1.5e-128 463.4 330 73.3
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 1.5e-128 463.4 330 73.3
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 2.0e-128 463.0 336 73.8
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 2.2e-127 459.5 330 72.4
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 8.3e-127 457.6 343 69.1
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 1.4e-126 456.8 319 77.7
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 3.2e-126 455.7 377 65.3
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 3.5e-125 452.2 358 68.4
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 3.5e-125 452.2 333 72.1
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 7.8e-125 451.1 344 71.5
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.1e-123 447.2 328 71.0
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 3.3e-123 445.7 365 67.7
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 2.3e-121 439.5 364 65.7
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 1.3e-119 433.7 308 73.1
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 1.4e-118 430.3 306 77.1
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 4.1e-118 428.7 306 72.2
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 9.2e-118 427.6 278 78.8
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 1.1e-115 420.6 248 87.1
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 3.6e-114 415.6 333 69.1
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 3.1e-113 412.5 281 75.4
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 5.2e-113 411.8 269 78.8
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.5e-112 410.2 306 69.0
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 4.9e-111 405.2 296 72.0
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 1.1e-110 404.1 331 63.7
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 4.6e-109 398.7 305 70.5
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 2.3e-108 396.4 304 67.1
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 2.9e-103 379.4 300 64.0
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 5.4e-102 375.2 297 65.7
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 5.4e-102 375.2 283 69.6
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 9.2e-102 374.4 308 61.7
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 7.3e-99 364.8 213 87.3
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.8e-98 362.8 210 87.1
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 3.6e-98 362.5 248 72.2
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 5.3e-97 358.6 237 81.4
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 3.3e-91 339.3 204 83.8
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 1.4e-89 334.0 301 57.1
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 5.8e-88 328.6 232 76.3
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 2.3e-84 316.6 281 58.4
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.9e-75 287.0 206 70.9
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 3.1e-73 279.6 197 74.1
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 3.1e-73 279.6 169 82.8
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 1.5e-67 260.8 197 71.1
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 2.6e-64 250.0 306 43.8
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 7.2e-54 215.3 148 76.4
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 2.5e-46 190.3 291 41.2
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 1.0e-44 184.9 139 72.7
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 1.5e-35 154.5 103 72.8
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 8.5e-31 138.7 97 74.2
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 6.1e-29 132.5 113 62.8
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 1.2e-27 128.3 99 69.7
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 6.3e-26 122.5 95 67.4
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.8e-25 120.9 246 38.2
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 3.8e-23 113.2 79 69.6
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 1.4e-20 104.8 99 52.5
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.0e-20 103.6 61 83.6
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.0e-20 103.6 62 83.9
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 4.0e-20 103.2 118 54.2
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 5.2e-20 102.8 81 58.0
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.2e-20 102.8 62 85.5
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 1.2e-19 101.7 62 85.5
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 1.5e-19 101.3 91 58.2
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 2.2e-18 97.4 106 50.0
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.7e-16 90.5 56 83.9
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.5e-16 90.1 55 85.5
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 5.8e-11 72.8 79 53.2
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 4.1e-09 66.6 42 73.8
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 1.2e-08 65.1 123 36.6
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 1.6e-08 64.7 40 80.0
Rhsim07G0166700 Rhododendron simsii HOM05D005156 ORTHO05D050672 2.0e-08 64.3 69 55.1
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 3.5e-08 63.5 40 75.0
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 4.6e-08 63.2 38 76.3
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 6.0e-08 62.8 35 82.9


User provided reference genes

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