Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001541 Camellia sinensis var. sinensis HOM05D002493 ORTHO05D020243 6.0e-97 358.2 299 100.0
CSS0041758 Camellia sinensis var. sinensis HOM05D002493 ORTHO05D020243 1.3e-86 323.9 299 95.7
Manes.08G061400 Manihot esculenta HOM05D002493 ORTHO05D003175 6.0e-20 102.4 304 28.6
Nn7g36909 Nelumbo nucifera HOM05D002493 ORTHO05D003175 6.0e-20 102.4 295 30.2
QL07p012378 Quercus lobata HOM05D002493 ORTHO05D003175 1.0e-19 101.7 295 32.2
CiPaw.10G042500 Carya illinoinensis HOM05D002493 ORTHO05D003175 1.1e-18 98.2 299 28.8
CiPaw.09G049700 Carya illinoinensis HOM05D002493 ORTHO05D003175 9.5e-18 95.1 295 29.2
Cfa019980 Carpinus fangiana HOM05D002493 ORTHO05D003175 1.2e-17 94.7 295 28.8
CANSAT64G2707 Cannabis sativa HOM05D002493 ORTHO05D003175 2.1e-17 94.0 295 28.8
Dinv21482 Davidia involucrata HOM05D002493 ORTHO05D003175 2.1e-17 94.0 297 29.0
Actinidia05482 Actinidia chinensis HOM05D002493 ORTHO05D003175 2.8e-17 93.6 295 27.5
Phvul.007G239100 Phaseolus vulgaris HOM05D002493 ORTHO05D003175 3.6e-17 93.2 297 27.6
Dinv08254 Davidia involucrata HOM05D002493 ORTHO05D003175 6.2e-17 92.4 295 28.5
Prupe.7G028700 Prunus persica HOM05D002493 ORTHO05D003175 1.1e-16 91.7 295 28.5
Lalb_Chr14g0365651 Lupinus albus HOM05D002493 ORTHO05D003175 1.8e-16 90.9 297 29.0
Manes.09G002800 Manihot esculenta HOM05D002493 ORTHO05D003175 1.8e-16 90.9 299 27.4
Ciclev10011717m.g Citrus clementina HOM05D002493 ORTHO05D003175 2.4e-16 90.5 298 28.9
Sed0019660 Sechium edule HOM05D002493 ORTHO05D003175 2.4e-16 90.5 295 27.8
Hma1.2p1_0254F.1_g103210 Hydrangea macrophylla HOM05D002493 ORTHO05D003175 3.1e-16 90.1 295 28.1
Sed0023770 Sechium edule HOM05D002493 ORTHO05D003175 3.1e-16 90.1 296 28.0
ClCG10G016470 Citrullus lanatus HOM05D002493 ORTHO05D003175 4.0e-16 89.7 295 29.2
Nn2g14656 Nelumbo nucifera HOM05D002493 ORTHO05D003175 4.0e-16 89.7 295 28.1
Cpa.g.sc92.76 Carica papaya HOM05D002493 ORTHO05D003175 5.2e-16 89.4 296 29.4
Haze_20255 Corylus avellana HOM05D002493 ORTHO05D003175 8.9e-16 88.6 295 27.8
MELO3C009729.2 Cucumis melo HOM05D002493 ORTHO05D003175 1.2e-15 88.2 295 28.8
CsaV3_3G039870 Cucumis sativus L. HOM05D002493 ORTHO05D003175 1.2e-15 88.2 295 28.1
Glyma.02G157800 Glycine max HOM05D002493 ORTHO05D003175 1.5e-15 87.8 297 27.9
Potri.016G033300 Populus trichocarpa HOM05D002493 ORTHO05D003175 1.5e-15 87.8 304 32.6
VMungo0720G0912 Vigna mungo HOM05D002493 ORTHO05D003175 4.4e-15 86.3 297 26.9
Lalb_Chr02g0156621 Lupinus albus HOM05D002493 ORTHO05D003175 7.6e-15 85.5 297 27.3
Lj1g0014460 Lotus japonicus HOM05D002493 ORTHO05D003175 9.9e-15 85.1 297 25.6
Gohir.A11G306400 Gossypium hirsutum HOM05D002493 ORTHO05D003175 1.3e-14 84.7 298 27.9
Eucgr.A02206 Eucalyptus grandis HOM05D002493 ORTHO05D003175 2.9e-14 83.6 297 26.3
Oeu024613.1 Olea europaea HOM05D002493 ORTHO05D003175 3.8e-14 83.2 301 27.2
Gohir.D11G321900 Gossypium hirsutum HOM05D002493 ORTHO05D003175 4.9e-14 82.8 298 28.2
Thecc.05G121400 Theobroma cacao HOM05D002493 ORTHO05D003175 4.9e-14 82.8 292 27.4
Atru.chr1.1386 Acer truncatum HOM05D002493 ORTHO05D003175 6.4e-14 82.4 297 25.3
TAR636G0768 Trochodendron aralioides HOM05D002493 ORTHO05D003175 1.1e-13 81.6 295 27.8
Aqoxy1G00414 Aquilegia oxysepala HOM05D002493 ORTHO05D003175 1.4e-13 81.3 297 26.6
Medtr7g089140 Medicago truncatula HOM05D002493 ORTHO05D003175 1.9e-13 80.9 297 25.9
Potri.006G035500 Populus trichocarpa HOM05D002493 ORTHO05D003175 1.9e-13 80.9 304 27.3
SalBow6G2849 Salvia bowleyana HOM05D002493 ORTHO05D003175 1.9e-13 80.9 303 27.4
Duzib106G0075 Durio zibethinus HOM05D002493 ORTHO05D003175 2.4e-13 80.5 292 27.1
Oeu027954.1 Olea europaea HOM05D002493 ORTHO05D003175 2.4e-13 80.5 295 27.8
THA.LOC104823166 Tarenaya hassleriana HOM05D002493 ORTHO05D003175 2.4e-13 80.5 300 33.3
VMungo1383G2045 Vigna mungo HOM05D002493 ORTHO05D003175 2.4e-13 80.5 297 27.3
Lalb_Chr22g0357761 Lupinus albus HOM05D002493 ORTHO05D003175 3.2e-13 80.1 300 26.7
TAR623G0194 Trochodendron aralioides HOM05D002493 ORTHO05D003175 3.2e-13 80.1 297 25.6
Gorai.007G352000 Gossypium raimondii HOM05D002493 ORTHO05D003175 4.2e-13 79.7 292 28.1
Ca_08373_v3 Cicer arietinum L. HOM05D002493 ORTHO05D003175 5.4e-13 79.3 297 26.6
Duzib128G0587 Durio zibethinus HOM05D002493 ORTHO05D003175 7.1e-13 79.0 297 26.6
Actinidia38179 Actinidia chinensis HOM05D002493 ORTHO05D003175 9.2e-13 78.6 295 26.8
Sopen10g031440 Solanum pennellii HOM05D002493 ORTHO05D003175 9.2e-13 78.6 99 39.4
COL.COLO4_08833 Corchorus olitorius HOM05D002493 ORTHO05D003175 1.2e-12 78.2 292 26.0
TWI77G0717 Tripterygium wilfordii HOM05D002493 ORTHO05D003175 1.2e-12 78.2 302 27.5
TAR633G1508 Trochodendron aralioides HOM05D002493 ORTHO05D003175 1.2e-12 78.2 299 26.8
PGR042G0425 Punica granatum HOM05D002493 ORTHO05D003175 1.6e-12 77.8 300 26.0
CiPaw.09G049600 Carya illinoinensis HOM05D002493 ORTHO05D003175 2.1e-12 77.4 297 25.3
Oeu005221.1 Olea europaea HOM05D002493 ORTHO05D003175 2.1e-12 77.4 298 26.2
Phvul.001G120200 Phaseolus vulgaris HOM05D002493 ORTHO05D003175 2.1e-12 77.4 297 25.6
MSTRG.6331 Avicennia marina HOM05D002493 ORTHO05D003175 2.7e-12 77.0 301 26.9
PSO384G4835 Papaver somniferum HOM05D002493 ORTHO05D003175 3.5e-12 76.6 294 26.2
Lalb_Chr24g0400441 Lupinus albus HOM05D002493 ORTHO05D003175 7.8e-12 75.5 298 26.2
MBI19_g07500_MAGBIO Magnolia biondii HOM05D002493 ORTHO05D003175 7.8e-12 75.5 76 42.1
TWI74G0428 Tripterygium wilfordii HOM05D002493 ORTHO05D003175 1.0e-11 75.1 301 26.9
PSO339G5287 Papaver somniferum HOM05D002493 ORTHO05D003175 1.3e-11 74.7 294 25.9
PGSC0003DMG400028192 Solanum tuberosum HOM05D002493 ORTHO05D003175 1.3e-11 74.7 295 24.7
TWI53G1609 Tripterygium wilfordii HOM05D002493 ORTHO05D003175 1.3e-11 74.7 304 28.0
Migut.J01632 Erythranthe guttata HOM05D002493 ORTHO05D003175 1.7e-11 74.3 303 26.7
Psat3g080480 Pisum sativum HOM05D002493 ORTHO05D003175 1.7e-11 74.3 297 24.9
Solyc10g080930.2 Solanum lycopersicum HOM05D002493 ORTHO05D003175 2.3e-11 73.9 295 24.7
CSS0002579 Camellia sinensis var. sinensis HOM05D002493 ORTHO05D003175 3.0e-11 73.6 295 25.1
Sabra06G0023800 Salix brachista HOM05D002493 ORTHO05D003175 3.0e-11 73.6 302 31.8
Rhsim04G0114000 Rhododendron simsii HOM05D002493 ORTHO05D003175 3.9e-11 73.2 294 29.9
Sc13g0000980 Simmondsia chinensis HOM05D002493 ORTHO05D003175 3.9e-11 73.2 296 27.4
Glyma.03G124700 Glycine max HOM05D002493 ORTHO05D003175 5.1e-11 72.8 298 26.8
THA.LOC104826877 Tarenaya hassleriana HOM05D002493 ORTHO05D003175 5.1e-11 72.8 300 27.0
Nitab4.5_0007477g0010 Nicotiana tabacum HOM05D002493 ORTHO05D003175 6.6e-11 72.4 97 42.3
vmacro08996 Vaccinium macrocarpon HOM05D002493 ORTHO05D003175 6.6e-11 72.4 295 27.1
Aqoxy2G00506 Aquilegia oxysepala HOM05D002493 ORTHO05D003175 8.7e-11 72.0 288 25.7
EL10Ac3g07266 Beta vulgaris HOM05D002493 ORTHO05D003175 8.7e-11 72.0 297 26.3
Nitab4.5_0000062g0160 Nicotiana tabacum HOM05D002493 ORTHO05D003175 8.7e-11 72.0 99 40.4
TPR.G16085 Trifolium pratense HOM05D002493 ORTHO05D003175 1.1e-10 71.6 297 24.6
arahy.Tifrunner.gnm1.ann1.4137UB Arachis hypogaea HOM05D002493 ORTHO05D003175 1.5e-10 71.2 291 23.7
arahy.Tifrunner.gnm1.ann1.ZA3CQ0 Arachis hypogaea HOM05D002493 ORTHO05D003175 1.5e-10 71.2 291 23.7
MD14G1088300 Malus domestica HOM05D002493 ORTHO05D003175 1.9e-10 70.9 303 23.8
Sc19g0008100 Simmondsia chinensis HOM05D002493 ORTHO05D003175 1.9e-10 70.9 295 24.4
Nitab4.5_0000812g0010 Nicotiana tabacum HOM05D002493 ORTHO05D003175 2.5e-10 70.5 299 26.4
HPP92_025127 Vanilla planifolia HOM05D000001 ORTHO05D000003 2.5e-10 70.5 292 25.3
AL6G14970 Arabidopsis lyrata HOM05D002493 ORTHO05D003175 3.3e-10 70.1 300 25.3
FvH4_6g37520 Fragaria vesca HOM05D002493 ORTHO05D003175 3.3e-10 70.1 295 24.7
FAN14G2978 Fragaria x ananassa HOM05D002493 ORTHO05D003175 3.3e-10 70.1 295 24.7
Peaxi162Scf01487g00006 Petunia axillaris HOM05D002493 ORTHO05D003175 5.6e-10 69.3 295 25.1
Carub.0006s0407 Capsella rubella HOM05D002493 ORTHO05D003175 7.3e-10 68.9 300 25.7
Ca_12358_v3 Cicer arietinum L. HOM05D002493 ORTHO05D003175 9.6e-10 68.6 83 41.0
SGA_v2.0_scaffold106G30532 Striga asiatica HOM05D002493 ORTHO05D003175 9.6e-10 68.6 67 46.3
MSTRG.19785 Avicennia marina HOM05D002493 ORTHO05D003175 1.3e-09 68.2 295 25.8
Glyma.19G127800 Glycine max HOM05D002493 ORTHO05D003175 1.3e-09 68.2 299 25.4
MBI13_g36916_MAGBIO Magnolia biondii HOM05D002493 ORTHO05D003175 1.3e-09 68.2 295 25.8
SGA_v2.0_scaffold66G22278 Striga asiatica HOM05D002493 ORTHO05D003175 1.3e-09 68.2 104 36.5
Ca_22467_v3 Cicer arietinum L. HOM05D000349 ORTHO05D003175 2.1e-09 67.4 83 39.8
Peaxi162Scf00003g05135 Petunia axillaris HOM05D002493 ORTHO05D003175 2.1e-09 67.4 74 45.9
FAN09G4564 Fragaria x ananassa HOM05D002493 ORTHO05D003175 2.8e-09 67.0 106 34.9
Peaxi162Scf00003g05132 Petunia axillaris HOM05D002493 ORTHO05D003175 2.8e-09 67.0 67 47.8
Nitab4.5_0002869g0070 Nicotiana tabacum HOM05D002493 ORTHO05D003175 3.6e-09 66.6 296 25.0
Nn1g07932 Nelumbo nucifera HOM05D002493 ORTHO05D003175 6.2e-09 65.9 97 36.1
SGA_v2.0_scaffold69G23165 Striga asiatica HOM05D002493 ORTHO05D003175 6.2e-09 65.9 298 25.8
Aa31LG11G5990 Aethionema arabicum HOM05D002493 ORTHO05D003175 8.1e-09 65.5 93 48.4
Ca_17097_v3 Cicer arietinum L. HOM05D002493 ORTHO05D003175 8.1e-09 65.5 83 37.3
RcHm_v2.0_Chr2g0150411 Rosa chinensis HOM05D002493 ORTHO05D003175 8.1e-09 65.5 294 25.2
FAN02G2197 Fragaria x ananassa HOM05D002493 ORTHO05D003175 1.1e-08 65.1 295 25.4
Atru.chr3.2727 Acer truncatum HOM05D002493 ORTHO05D003175 1.4e-08 64.7 74 40.5
Ah.04g150770 Amaranthus hybridus HOM05D002493 ORTHO05D003175 1.4e-08 64.7 87 39.1
arahy.Tifrunner.gnm1.ann1.SF5CY1 Arachis hypogaea HOM05D002493 ORTHO05D003175 1.4e-08 64.7 297 25.6
BcaB01g05724 Brassica carinata HOM05D002493 ORTHO05D003175 1.4e-08 64.7 86 45.3
HanXRQChr01g0007661 Helianthus annuus HOM05D002493 ORTHO05D003175 1.4e-08 64.7 65 41.5
Hund19081 Selenicereus undatus HOM05D002493 ORTHO05D003175 1.8e-08 64.3 304 25.0
AUR62030285 Chenopodium quinoa HOM05D002493 ORTHO05D003175 2.4e-08 63.9 292 24.7
Haze_20253 Corylus avellana HOM05D002493 ORTHO05D003175 2.4e-08 63.9 51 51.0
DCAR_013651 Daucus carota HOM05D002493 ORTHO05D003175 2.4e-08 63.9 299 27.1
Peaxi162Scf00003g05036 Petunia axillaris HOM05D002493 ORTHO05D003175 2.4e-08 63.9 295 25.8
ATR0307G132 Amborella trichopoda HOM05D002493 ORTHO05D003175 3.1e-08 63.5 98 34.7
arahy.Tifrunner.gnm1.ann1.TK2Q97 Arachis hypogaea HOM05D002493 ORTHO05D003175 3.1e-08 63.5 297 24.9
C09p71560 Brassica napus HOM05D002493 ORTHO05D003175 3.1e-08 63.5 296 25.0
BolC9t59917H Brassica oleracea HOM05D002493 ORTHO05D003175 3.1e-08 63.5 296 25.0
QL07p012326 Quercus lobata HOM05D002493 ORTHO05D003175 3.1e-08 63.5 88 48.9
HPP92_006789 Vanilla planifolia HOM05D002493 ORTHO05D003175 3.1e-08 63.5 292 24.7
Ah.13g077170 Amaranthus hybridus HOM05D002493 ORTHO05D003175 4.0e-08 63.2 295 25.4
Cc00_g10950 Coffea canephora HOM05D002493 ORTHO05D003175 4.0e-08 63.2 297 25.6
Sp6g37700 Schrenkiella parvula HOM05D002493 ORTHO05D003175 4.0e-08 63.2 302 25.2
Thhalv10013510m.g Eutrema salsugineum HOM05D002493 ORTHO05D003175 5.3e-08 62.8 301 25.2
Sabra16G0036400 Salix brachista HOM05D002493 ORTHO05D003175 6.9e-08 62.4 302 30.1
CDE08G0887 Ceratophyllum demersum HOM05D002493 ORTHO05D003175 9.0e-08 62.0 55 65.5
GSVIVG01025776001 Vitis vinifera HOM05D002493 ORTHO05D003175 9.0e-08 62.0 76 50.0
CDE08G0106 Ceratophyllum demersum HOM05D002493 ORTHO05D003175 1.2e-07 61.6 84 51.2
Lj2C403T6 Lonicera japonica HOM05D002493 ORTHO05D003175 1.2e-07 61.6 297 23.6
SEGI_11259 Sequoiadendron giganteum HOM05D002493 ORTHO05D003175 1.5e-07 61.2 294 24.5
AT5G05140 Arabidopsis thaliana HOM05D002493 ORTHO05D003175 2.6e-07 60.5 85 49.4
CARHR208120 Cardamine hirsuta HOM05D002493 ORTHO05D003175 2.6e-07 60.5 82 52.4
TAR375G0992 Trochodendron aralioides HOM05D002493 ORTHO05D003175 2.6e-07 60.5 63 38.1
A10p31030 Brassica napus HOM05D002493 ORTHO05D003175 3.4e-07 60.1 295 24.4
BraA10t45148Z Brassica rapa HOM05D002493 ORTHO05D003175 3.4e-07 60.1 295 24.4
AUR62018377 Chenopodium quinoa HOM05D002493 ORTHO05D003175 3.4e-07 60.1 55 63.6
CAN.G128.85 Capsicum annuum HOM05D002493 ORTHO05D003175 4.4e-07 59.7 49 53.1
ECA248G1298 Erigeron canadensis HOM05D002493 ORTHO05D003175 4.4e-07 59.7 75 37.3
HanXRQChr13g0406701 Helianthus annuus HOM05D002493 ORTHO05D003175 4.4e-07 59.7 295 23.1
Lsat_1_v5_gn_7_61900 Lactuca sativa HOM05D002493 ORTHO05D003175 4.4e-07 59.7 110 30.9
BcaC06g32223 Brassica carinata HOM05D002493 ORTHO05D003175 5.8e-07 59.3 76 36.8
Carub.0003s1006 Capsella rubella HOM05D002493 ORTHO05D003175 5.8e-07 59.3 67 40.3
SEGI_02726 Sequoiadendron giganteum HOM05D024882 ORTHO05D020243 5.8e-07 59.3 45 53.3
BraA03t09582Z Brassica rapa HOM05D002493 ORTHO05D003175 7.6e-07 58.9 84 46.4
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 7.6e-07 58.9 46 47.8
BcaB05g21730 Brassica carinata HOM05D002493 ORTHO05D003175 1.3e-06 58.2 77 46.8
CARHR085400 Cardamine hirsuta HOM05D002493 ORTHO05D003175 1.7e-06 57.8 103 35.0
unitig_21.g20685 Utricularia gibba HOM05D002493 ORTHO05D003175 1.7e-06 57.8 99 29.3
A03p02180 Brassica napus HOM05D002493 ORTHO05D003175 2.2e-06 57.4 109 35.8
CAN.G960.68 Capsicum annuum HOM05D002493 ORTHO05D003175 2.2e-06 57.4 69 34.8
Migut.K00147 Erythranthe guttata HOM05D002493 ORTHO05D003175 2.2e-06 57.4 114 33.3
Zm00001eb394260 Zea mays HOM05D002493 ORTHO05D003175 2.2e-06 57.4 46 52.2
Sp3g09150 Schrenkiella parvula HOM05D002493 ORTHO05D003175 3.8e-06 56.6 95 37.9
unitig_0.g601 Utricularia gibba HOM05D000012 ORTHO05D001936 6.4e-06 55.8 106 41.5
BolC2t06187H Brassica oleracea HOM05D002493 ORTHO05D003175 8.4e-06 55.5 67 37.3


User provided reference genes

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