Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 1.1e-69 266.5 139 100.0
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 9.4e-61 236.9 138 88.4
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 9.8e-58 226.9 140 83.6
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 9.8e-58 226.9 142 85.2
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 4.9e-57 224.6 137 83.9
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 6.3e-57 224.2 138 84.8
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 6.3e-57 224.2 140 85.0
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 6.3e-57 224.2 140 83.6
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.1e-56 223.4 142 85.2
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.8e-56 222.6 139 84.2
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 3.1e-56 221.9 140 82.9
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.4e-56 221.1 139 84.2
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 7.0e-56 220.7 142 82.4
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 7.0e-56 220.7 141 84.4
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.7e-55 218.8 141 83.0
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 3.5e-55 218.4 139 82.0
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 3.5e-55 218.4 141 81.6
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 5.9e-55 217.6 140 82.9
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 1.0e-54 216.9 138 80.4
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.0e-54 216.9 138 81.9
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.3e-54 216.5 141 82.3
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.3e-54 216.5 141 82.3
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 2.3e-54 215.7 138 84.8
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 2.3e-54 215.7 138 80.4
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 2.3e-54 215.7 139 83.5
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.9e-54 215.3 139 83.5
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.0e-54 214.5 139 82.7
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 6.6e-54 214.2 139 79.1
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 1.5e-53 213.0 139 79.9
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 1.9e-53 212.6 141 80.1
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.5e-53 212.2 139 78.4
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 2.5e-53 212.2 141 80.9
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 3.3e-53 211.8 140 81.4
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 3.3e-53 211.8 139 79.1
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 4.3e-53 211.5 139 82.0
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 5.6e-53 211.1 142 78.9
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 5.6e-53 211.1 141 81.6
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 9.5e-53 210.3 139 77.7
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 9.5e-53 210.3 141 80.1
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 9.5e-53 210.3 141 80.1
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 9.5e-53 210.3 141 79.4
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 9.5e-53 210.3 139 78.4
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 9.5e-53 210.3 141 81.6
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 80.9
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.8e-52 208.8 141 79.4
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.8e-52 208.8 141 79.4
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 3.6e-52 208.4 142 78.9
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 3.6e-52 208.4 142 78.9
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 3.6e-52 208.4 141 80.1
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 4.7e-52 208.0 140 78.6
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 4.7e-52 208.0 140 78.6
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 4.7e-52 208.0 140 78.6
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 4.7e-52 208.0 140 78.6
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 4.7e-52 208.0 140 78.6
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 4.7e-52 208.0 140 79.3
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 80.1
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 78.7
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 6.1e-52 207.6 142 78.2
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 78.7
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 6.1e-52 207.6 142 78.2
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 6.1e-52 207.6 141 78.7
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 6.1e-52 207.6 140 77.1
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 8.0e-52 207.2 142 78.2
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 8.0e-52 207.2 141 80.9
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 8.0e-52 207.2 140 78.6
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.0e-51 206.8 142 78.2
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 1.0e-51 206.8 141 78.0
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 1.0e-51 206.8 133 79.7
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.0e-51 206.8 140 79.3
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 78.7
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.4e-51 206.5 141 78.0
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.8e-51 206.1 139 79.9
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 1.8e-51 206.1 139 79.9
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 2.3e-51 205.7 142 79.6
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.3e-51 205.7 142 76.8
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 2.3e-51 205.7 141 78.0
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.3e-51 205.7 143 79.0
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 5.2e-51 204.5 142 76.8
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 5.2e-51 204.5 140 77.9
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 5.2e-51 204.5 142 76.1
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 6.8e-51 204.1 136 81.6
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 6.8e-51 204.1 139 77.0
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 8.9e-51 203.8 141 77.3
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 8.9e-51 203.8 140 77.9
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 8.9e-51 203.8 141 78.0
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 2.0e-50 202.6 142 75.4
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 72.3
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 75.9
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 2.6e-50 202.2 139 76.3
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 77.3
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 3.4e-50 201.8 138 79.0
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 3.4e-50 201.8 139 75.5
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 3.4e-50 201.8 139 75.5
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 4.4e-50 201.4 143 79.0
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 7.5e-50 200.7 138 76.1
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 1.7e-49 199.5 139 77.7
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.9e-49 198.7 141 75.9
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 2.9e-49 198.7 138 76.1
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 3.7e-49 198.4 141 78.7
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 3.7e-49 198.4 134 79.1
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 4.9e-49 198.0 138 75.4
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 4.9e-49 198.0 141 76.6
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 6.4e-49 197.6 139 77.0
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 1.8e-48 196.1 138 76.1
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.8e-48 196.1 156 70.5
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 2.4e-48 195.7 139 73.4
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 3.2e-48 195.3 141 73.8
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 4.1e-48 194.9 138 73.9
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 7.0e-48 194.1 138 74.6
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 9.2e-48 193.7 133 77.4
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.2e-47 193.4 143 75.5
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 2.0e-47 192.6 142 73.9
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 2.7e-47 192.2 137 75.2
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 3.5e-47 191.8 135 74.8
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 3.5e-47 191.8 141 74.5
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 5.9e-47 191.0 140 76.4
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 7.8e-47 190.7 140 73.6
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 3.0e-46 188.7 144 72.2
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 3.9e-46 188.3 140 72.1
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 3.9e-46 188.3 138 74.6
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.0e-46 188.0 140 72.1
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 5.0e-46 188.0 140 70.7
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 2.5e-45 185.7 136 73.5
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 4.3e-45 184.9 140 70.7
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 1.2e-44 183.3 140 73.6
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.6e-44 183.0 144 70.1
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.1e-44 182.6 136 71.3
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 4.7e-44 181.4 141 72.3
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 1.4e-43 179.9 136 73.5
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 1.8e-43 179.5 140 72.9
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 6.8e-43 177.6 140 70.7
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 4.4e-42 174.9 154 68.2
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 9.8e-42 173.7 143 69.2
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 9.8e-42 173.7 143 69.2
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 2.2e-41 172.6 142 67.6
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 8.3e-41 170.6 138 70.3
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 2.4e-40 169.1 160 61.2
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.0e-39 166.0 141 65.2
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 3.5e-39 165.2 123 70.7
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 4.6e-39 164.9 88 93.2
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 5.0e-38 161.4 139 65.5
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 4.3e-37 158.3 110 73.6
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.1e-36 156.0 138 60.1
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 3.1e-35 152.1 134 59.0
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 6.4e-33 144.4 117 63.2
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 3.2e-32 142.1 90 86.7
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 4.1e-32 141.7 134 58.2
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.4e-32 141.4 114 66.7
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 3.5e-31 138.7 142 61.3
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 7.8e-31 137.5 141 60.3
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.1e-29 133.7 138 55.8
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.6e-28 129.8 147 53.1
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 4.7e-28 128.3 141 55.3
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 8.1e-28 127.5 142 55.6
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 8.1e-28 127.5 142 52.1
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 8.1e-28 127.5 90 73.3
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.1e-27 125.6 145 50.3
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 8.9e-27 124.0 91 78.0
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 6.6e-22 107.8 53 94.3
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 1.1e-21 107.1 139 49.6
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 1.1e-21 107.1 132 43.9
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 6.2e-20 101.3 67 68.7
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 4.9e-17 91.7 80 60.0
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 1.1e-16 90.5 79 60.8
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 3.5e-15 85.5 74 67.6
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 3.2e-08 62.4 134 38.8


User provided reference genes

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