Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.7e-211 737.6 381 100.0
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.6e-110 402.5 204 100.0
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 3.0e-109 399.4 204 99.0
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 8.8e-109 397.9 204 99.0
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.0e-108 396.7 209 96.7
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 4.7e-78 295.8 225 71.1
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 1.2e-73 281.2 174 79.3
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 1.3e-72 277.7 172 79.1
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 6.8e-69 265.4 199 70.4
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 2.4e-66 256.9 174 75.3
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 7.0e-66 255.4 185 71.9
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 3.5e-65 253.1 174 74.7
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 3.0e-64 250.0 175 73.7
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 2.1e-62 243.8 158 77.8
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 4.7e-62 242.7 152 79.6
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 4.7e-62 242.7 198 64.6
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 8.0e-62 241.9 198 64.6
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 2.3e-61 240.4 174 68.4
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 2.0e-60 237.3 158 72.8
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 2.0e-60 237.3 227 58.1
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 2.0e-60 237.3 249 57.4
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.6e-60 236.9 205 61.5
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.5e-60 235.3 175 68.0
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 2.9e-59 233.4 199 64.3
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 3.7e-59 233.0 172 68.0
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.9e-59 232.6 174 67.8
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 8.3e-59 231.9 210 59.0
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.1e-58 231.5 169 68.6
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 1.9e-58 230.7 178 68.5
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 3.2e-58 229.9 173 68.8
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 9.2e-58 228.4 179 67.0
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 9.2e-58 228.4 152 74.3
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 1.2e-57 228.0 159 72.3
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 1.6e-57 227.6 191 63.9
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.1e-57 227.3 169 67.5
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 4.6e-57 226.1 172 68.6
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.3e-56 224.6 215 56.3
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.3e-56 223.8 172 66.3
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 2.3e-56 223.8 169 67.5
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 5.1e-56 222.6 209 57.4
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 6.6e-56 222.2 220 57.7
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 6.6e-56 222.2 146 74.0
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.5e-55 221.1 159 69.8
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.5e-55 221.1 159 69.8
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 7.3e-55 218.8 169 65.1
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 9.5e-55 218.4 156 69.9
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.2e-54 218.0 217 56.7
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 2.1e-54 217.2 161 67.7
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.8e-54 216.9 172 65.1
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 2.8e-54 216.9 126 81.7
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 3.6e-54 216.5 126 81.7
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 4.7e-54 216.1 172 64.5
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 8.1e-54 215.3 198 62.1
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 3.1e-53 213.4 156 70.5
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.0e-52 210.7 162 66.7
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 3.4e-52 209.9 161 67.7
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 5.8e-52 209.1 161 68.9
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 9.9e-52 208.4 161 68.3
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.3e-51 208.0 157 67.5
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 6.4e-51 205.7 174 59.8
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.4e-50 203.8 158 67.1
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 2.4e-50 203.8 157 67.5
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 4.1e-50 203.0 156 69.2
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 4.1e-50 203.0 162 66.0
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 7.1e-50 202.2 320 43.4
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 9.2e-50 201.8 178 59.6
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.2e-49 201.4 200 56.0
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.6e-49 201.1 177 60.5
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 1.6e-49 201.1 210 53.8
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 1.6e-49 201.1 160 62.5
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 2.1e-49 200.7 184 58.2
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 2.7e-49 200.3 197 56.3
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 4.6e-49 199.5 197 56.3
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 4.6e-49 199.5 197 56.3
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 4.6e-49 199.5 197 56.3
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 4.6e-49 199.5 170 62.9
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 7.8e-49 198.7 166 64.5
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 1.3e-48 198.0 199 55.3
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.3e-48 198.0 200 55.5
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 1.3e-48 198.0 177 59.9
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 3.0e-48 196.8 177 59.9
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 3.9e-48 196.4 162 63.6
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 5.1e-48 196.1 172 63.4
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 6.6e-48 195.7 173 62.4
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 6.6e-48 195.7 162 63.6
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 6.6e-48 195.7 171 60.2
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 1.5e-47 194.5 174 59.8
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 5.6e-47 192.6 150 66.7
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 4.0e-45 186.4 121 76.0
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 5.2e-45 186.0 177 54.8
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.5e-44 184.5 166 59.0
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 5.8e-44 182.6 159 62.9
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.6e-44 182.2 163 63.8
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 4.9e-43 179.5 163 58.9
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 8.4e-43 178.7 215 48.4
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.1e-42 178.3 163 57.7
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.1e-42 178.3 163 57.7
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 2.4e-42 177.2 213 46.9
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 9.3e-42 175.3 208 53.4
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 4.6e-41 172.9 162 56.8
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.0e-40 171.8 178 51.7
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 1.3e-40 171.4 159 60.4
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.7e-40 171.0 167 54.5
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 2.3e-40 170.6 162 56.2
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 6.6e-40 169.1 155 54.2
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 8.1e-38 162.2 129 64.3
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.1e-37 161.8 147 59.9
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 1.3e-35 154.8 110 71.8
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 2.2e-35 154.1 121 65.3
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 2.9e-35 153.7 198 47.5
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 3.9e-32 143.3 136 56.6
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 9.6e-31 138.7 102 64.7
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 2.8e-30 137.1 104 65.4
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 7.6e-28 129.0 136 57.4
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 1.3e-27 128.3 103 62.1
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 6.4e-27 125.9 95 66.3
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 3.9e-24 116.7 80 66.2
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 5.1e-24 116.3 104 60.6
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 1.6e-17 94.7 88 56.8
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 3.7e-14 83.6 69 58.0
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 5.0e-11 73.2 101 46.5
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.4e-10 71.6 121 37.2
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 1.9e-10 71.2 120 36.7
A05p25490 Brassica napus HOM05D006505 ORTHO05D008086 3.2e-10 70.5 46 69.6
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 1.5e-07 61.6 63 46.0
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 1.5e-07 61.6 63 46.0
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 1.9e-07 61.2 63 46.0
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 3.3e-07 60.5 149 34.2
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 7.4e-07 59.3 63 44.4


User provided reference genes

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