Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001270 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.2e-168 596.3 279 100.0
CSS0039700 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 7.5e-166 587.0 279 98.9
CSS0043747 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 7.5e-158 560.5 279 95.7
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 4.7e-144 514.6 279 86.0
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 1.5e-142 509.6 280 85.4
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 2.0e-142 509.2 279 84.6
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 2.0e-142 509.2 280 86.1
CSS0019318 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 2.2e-141 505.8 279 85.7
Hma1.2p1_1378F.1_g279185 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 1.7e-138 496.1 279 83.2
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 6.2e-136 487.6 279 81.4
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 1.7e-133 479.6 279 81.0
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 2.2e-133 479.2 279 79.2
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 2.9e-133 478.8 279 79.6
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.1e-132 476.9 279 77.8
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 7.1e-132 474.2 279 77.8
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 9.2e-132 473.8 279 78.5
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 2.7e-131 472.2 279 77.1
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 7.8e-131 470.7 279 77.8
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 7.8e-131 470.7 279 78.5
TAR627G0487 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.7e-130 469.5 279 76.7
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 6.6e-130 467.6 279 77.1
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 1.1e-129 466.8 279 76.7
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.1e-129 466.8 279 76.7
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 1.5e-129 466.5 279 77.1
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 4.3e-129 464.9 251 88.0
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 4.3e-129 464.9 317 69.7
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 4.3e-129 464.9 279 77.1
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 4.3e-129 464.9 279 76.3
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 4.3e-129 464.9 279 76.3
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 9.5e-129 463.8 279 76.0
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 1.2e-128 463.4 279 76.7
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 2.1e-128 462.6 279 78.5
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 2.1e-128 462.6 279 77.8
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 8.1e-128 460.7 279 77.8
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 1.4e-127 459.9 279 75.3
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 2.3e-127 459.1 279 77.8
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 3.1e-127 458.8 279 75.3
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 5.2e-127 458.0 279 77.4
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 5.2e-127 458.0 279 77.1
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 5.2e-127 458.0 279 76.3
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 6.8e-127 457.6 278 75.9
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 8.9e-127 457.2 279 77.4
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 3.4e-126 455.3 279 73.8
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 4.4e-126 454.9 279 77.1
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 7.6e-126 454.1 279 76.0
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 7.6e-126 454.1 279 75.6
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 6.4e-125 451.1 279 74.9
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 8.4e-125 450.7 279 73.8
ClCG02G001610 Citrullus lanatus HOM05D003463 ORTHO05D004206 1.9e-124 449.5 279 75.3
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 4.1e-124 448.4 279 74.9
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 7.1e-124 447.6 279 74.2
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 9.2e-124 447.2 279 71.3
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 1.2e-123 446.8 279 72.4
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 1.2e-123 446.8 279 72.8
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 1.6e-123 446.4 279 74.2
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 4.6e-123 444.9 277 74.0
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 2.3e-122 442.6 279 73.1
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 2.3e-122 442.6 279 74.2
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 3.0e-122 442.2 279 73.1
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 6.6e-122 441.0 279 72.4
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 8.6e-122 440.7 279 73.5
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.1e-121 440.3 279 72.4
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 1.1e-121 440.3 279 72.8
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 1.5e-121 439.9 279 72.4
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.5e-121 439.9 279 73.5
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 1.9e-121 439.5 279 72.8
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 2.5e-121 439.1 279 71.7
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 3.3e-121 438.7 272 73.5
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 1.2e-120 436.8 279 71.3
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.2e-120 436.8 279 71.3
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 1.2e-120 436.8 275 72.7
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 1.2e-120 436.8 279 75.3
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.6e-120 436.4 279 71.3
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 1.6e-120 436.4 279 73.5
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 4.7e-120 434.9 279 73.1
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 6.2e-120 434.5 278 70.9
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 6.2e-120 434.5 279 72.8
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 8.1e-120 434.1 273 74.0
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 1.1e-119 433.7 276 71.0
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 1.8e-119 433.0 279 71.0
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 6.9e-119 431.0 279 71.0
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 2.0e-118 429.5 279 71.3
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 2.6e-118 429.1 279 71.7
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 5.8e-118 427.9 279 70.6
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 1.3e-117 426.8 279 70.6
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 1.3e-117 426.8 271 72.0
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 3.8e-117 425.2 285 71.2
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 4.9e-117 424.9 279 71.3
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 3.2e-116 422.2 280 72.5
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 1.2e-115 420.2 279 69.9
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 1.6e-115 419.9 277 67.1
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 3.5e-115 418.7 277 67.5
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 3.5e-115 418.7 277 67.5
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 3.5e-115 418.7 279 70.6
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 6.0e-115 417.9 277 66.4
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 1.5e-113 413.3 278 66.9
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 1.5e-113 413.3 279 71.0
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 3.3e-113 412.1 279 67.0
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 3.6e-112 408.7 279 65.9
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 4.8e-112 408.3 279 66.3
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 8.1e-112 407.5 277 66.4
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 4.0e-111 405.2 277 64.3
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 1.2e-110 403.7 277 64.3
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 2.6e-110 402.5 279 65.6
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 2.6e-110 402.5 277 63.9
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 2.6e-110 402.5 277 63.9
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 3.4e-110 402.1 277 64.3
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 3.4e-110 402.1 277 64.3
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 5.8e-110 401.4 277 63.5
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 5.8e-110 401.4 277 63.5
Os08g0180100 Oryza sativa ssp. japonica HOM05D003463 ORTHO05D004206 1.7e-109 399.8 272 66.5
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 3.8e-109 398.7 277 63.5
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 8.4e-109 397.5 280 64.6
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 1.4e-108 396.7 272 65.4
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 2.4e-108 396.0 277 63.2
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 2.4e-108 396.0 277 62.8
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 2.4e-108 396.0 277 62.8
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 1.3e-106 390.2 272 65.1
Eucgr.E02490 Eucalyptus grandis HOM05D003463 ORTHO05D004206 1.1e-105 387.1 276 65.9
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 6.2e-104 381.3 261 67.4
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 3.1e-103 379.0 217 80.6
Hma1.2p1_2477F.1_g322850 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 4.2e-100 368.6 246 74.0
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 7.6e-94 347.8 269 58.0
Nn7g36849 Nelumbo nucifera HOM05D003463 ORTHO05D004206 4.9e-93 345.1 216 76.9
Actinidia27017 Actinidia chinensis HOM05D003463 ORTHO05D004206 5.1e-90 335.1 209 77.5
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 4.5e-86 322.0 279 58.1
CSS0016126 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.4e-84 317.0 176 88.6
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 2.2e-80 303.1 273 51.6
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 4.7e-59 232.3 278 43.5
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 8.0e-59 231.5 274 44.2
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 6.7e-58 228.4 274 43.4
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 6.7e-58 228.4 274 43.4
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 4.4e-57 225.7 150 68.7
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 1.6e-54 217.2 276 40.2
CSS0047242 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 5.0e-53 212.2 102 98.0
Nn2g14668 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.2e-46 191.0 118 72.9
CBR_g54148 Chara braunii HOM05D003463 ORTHO05D004206 1.6e-46 190.7 271 37.3
Nn2g15719 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.1e-36 157.9 108 73.1
HanXRQChr04g0111771 Helianthus annuus HOM05D003463 ORTHO05D004206 8.0e-35 151.8 105 66.7
Nn5g27117 Nelumbo nucifera HOM05D003463 ORTHO05D004206 7.0e-31 138.7 103 72.8
Nn5g27119 Nelumbo nucifera HOM05D003463 ORTHO05D004206 7.0e-31 138.7 103 72.8
RcHm_v2.0_Chr2g0131031 Rosa chinensis HOM05D003463 ORTHO05D004206 1.6e-30 137.5 103 63.1
HanXRQChr11g0343651 Helianthus annuus HOM05D001440 ORTHO05D001119 4.7e-27 125.9 79 72.2
Sc23g0004320 Simmondsia chinensis HOM05D000588 ORTHO05D000637 2.9e-24 116.7 86 61.6
PRCOL_00001206 Prasinoderma coloniale HOM05D003463 ORTHO05D004206 7.8e-22 108.6 294 27.9
HanXRQChr01g0020431 Helianthus annuus HOM05D002344 ORTHO05D004206 8.6e-21 105.1 79 62.0
HanXRQChr14g0432881 Helianthus annuus HOM05D003463 ORTHO05D004206 1.2e-19 101.3 81 60.5
Nn2g15720 Nelumbo nucifera HOM05D003463 ORTHO05D004206 5.2e-18 95.9 58 72.4
MCO02G192 Micromonas commoda HOM05D003463 ORTHO05D004206 8.3e-16 88.6 240 27.1
Nn5g27118 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.2e-14 84.7 46 80.4
Nn5g27120 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.2e-14 84.7 46 80.4
MCO11G062 Micromonas commoda HOM05D003463 ORTHO05D004206 2.4e-07 60.5 101 34.7
SMO135G0001 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 1.2e-06 58.2 57 45.6
SMO365G0046 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 1.2e-06 58.2 57 45.6
DCAR_015842 Daucus carota HOM05D003463 ORTHO05D178082 4.6e-06 56.2 42 59.5


User provided reference genes

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