Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001259 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 7.0e-43 176.8 84 100.0
CSS0038308 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 2.0e-42 175.3 84 98.8
CSS0004310 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 1.8e-38 162.2 79 97.5
CSS0033070 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D006476 1.8e-38 162.2 79 97.5
Actinidia06597 Actinidia chinensis HOM05D002593 ORTHO05D006476 9.2e-35 149.8 81 87.7
Dinv07259 Davidia involucrata HOM05D002593 ORTHO05D006476 6.2e-31 137.1 81 82.7
Ciclev10000418m.g Citrus clementina HOM05D002593 ORTHO05D006476 2.3e-30 135.2 81 80.2
Rhsim10G0129800 Rhododendron simsii HOM05D002593 ORTHO05D006476 5.8e-29 130.6 78 80.8
Oeu042316.1 Olea europaea HOM05D002593 ORTHO05D006476 2.2e-28 128.6 81 75.3
Potri.005G070700 Populus trichocarpa HOM05D002593 ORTHO05D006476 6.4e-28 127.1 80 76.2
vmacro12772 Vaccinium macrocarpon HOM05D002593 ORTHO05D006476 8.3e-28 126.7 79 79.7
CiPaw.07G075900 Carya illinoinensis HOM05D002593 ORTHO05D006476 3.2e-27 124.8 81 74.1
MELO3C008996.2 Cucumis melo HOM05D002593 ORTHO05D006476 3.2e-27 124.8 81 74.1
Migut.L00269 Erythranthe guttata HOM05D002593 ORTHO05D006476 3.2e-27 124.8 81 74.1
DCAR_000693 Daucus carota HOM05D002593 ORTHO05D006476 4.1e-27 124.4 81 76.5
CsaV3_4G031190 Cucumis sativus L. HOM05D002593 ORTHO05D006476 5.4e-27 124.0 81 74.1
MSTRG.3600 Avicennia marina HOM05D002593 ORTHO05D006476 7.0e-27 123.6 82 73.2
SalBow7G4483 Salvia bowleyana HOM05D002593 ORTHO05D006476 7.0e-27 123.6 81 71.6
Lj1A109G43 Lonicera japonica HOM05D002593 ORTHO05D006476 1.2e-26 122.9 83 74.7
TAR381G0271 Trochodendron aralioides HOM05D002593 ORTHO05D006476 1.2e-26 122.9 81 74.1
TAR381G0660 Trochodendron aralioides HOM05D002593 ORTHO05D006476 1.2e-26 122.9 81 74.1
Hma1.2p1_0619F.1_g190360 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 3.5e-26 121.3 81 72.8
Peaxi162Scf00076g01057 Petunia axillaris HOM05D002593 ORTHO05D006476 4.6e-26 120.9 80 73.8
Atru.chr4.1131 Acer truncatum HOM05D002593 ORTHO05D006476 6.0e-26 120.6 81 67.9
ClCG04G001200 Citrullus lanatus HOM05D002593 ORTHO05D006476 6.0e-26 120.6 81 71.6
MD05G1249400 Malus domestica HOM05D002593 ORTHO05D006476 1.7e-25 119.0 81 72.8
Cfa002122 Carpinus fangiana HOM05D002593 ORTHO05D006476 2.3e-25 118.6 81 71.6
TWI79G0542 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 2.3e-25 118.6 81 69.1
PGR119G1937 Punica granatum HOM05D002593 ORTHO05D006476 3.9e-25 117.9 81 67.9
RcHm_v2.0_Chr5g0020561 Rosa chinensis HOM05D002593 ORTHO05D006476 5.0e-25 117.5 81 70.4
Sabra05G0057500 Salix brachista HOM05D002593 ORTHO05D006476 5.0e-25 117.5 82 70.7
Cc11_g02090 Coffea canephora HOM05D002593 ORTHO05D006476 8.6e-25 116.7 79 69.6
Nitab4.5_0002512g0060 Nicotiana tabacum HOM05D002593 ORTHO05D006476 8.6e-25 116.7 79 69.6
PGSC0003DMG401014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 8.6e-25 116.7 79 69.6
PGSC0003DMG402014557 Solanum tuberosum HOM05D002593 ORTHO05D006476 1.1e-24 116.3 79 70.9
GSVIVG01022377001 Vitis vinifera HOM05D002593 ORTHO05D006476 1.1e-24 116.3 82 69.5
QL01p049838 Quercus lobata HOM05D002593 ORTHO05D006476 1.5e-24 115.9 72 77.8
CANSAT01G0469 Cannabis sativa HOM05D002593 ORTHO05D006476 1.9e-24 115.5 81 69.1
Eucgr.I00094 Eucalyptus grandis HOM05D002593 ORTHO05D006476 1.9e-24 115.5 81 70.4
FAN25G3668 Fragaria x ananassa HOM05D002593 ORTHO05D006476 2.5e-24 115.2 81 67.9
Solyc05g009080.4 Solanum lycopersicum HOM05D002593 ORTHO05D006476 2.5e-24 115.2 79 68.4
CAN.G610.52 Capsicum annuum HOM05D002593 ORTHO05D006476 4.3e-24 114.4 79 69.6
FvH4_3g12600 Fragaria vesca HOM05D002593 ORTHO05D006476 4.3e-24 114.4 81 69.1
FAN16G0380 Fragaria x ananassa HOM05D002593 ORTHO05D006476 4.3e-24 114.4 81 69.1
FAN16G0459 Fragaria x ananassa HOM05D002593 ORTHO05D006476 4.3e-24 114.4 81 69.1
Sed0011819 Sechium edule HOM05D002593 ORTHO05D006476 4.3e-24 114.4 81 69.1
Sopen05g004810 Solanum pennellii HOM05D002593 ORTHO05D006476 4.3e-24 114.4 79 67.1
SGA_v2.0_scaffold244G44338 Striga asiatica HOM05D002593 ORTHO05D006476 1.2e-23 112.8 82 68.3
Cpa.g.sc37.46 Carica papaya HOM05D002593 ORTHO05D006476 1.6e-23 112.5 77 70.1
COL.COLO4_12118 Corchorus olitorius HOM05D002593 ORTHO05D003294 1.6e-23 112.5 82 69.5
Lalb_Chr12g0202891 Lupinus albus HOM05D002593 ORTHO05D006476 4.7e-23 110.9 82 70.7
Hund21782 Selenicereus undatus HOM05D002593 ORTHO05D006476 4.7e-23 110.9 80 70.0
Aqoxy6G00211 Aquilegia oxysepala HOM05D002593 ORTHO05D006476 1.1e-22 109.8 82 67.1
EL10Ac4g09659 Beta vulgaris HOM05D002593 ORTHO05D006476 1.8e-22 109.0 82 68.3
Gohir.D09G005200 Gossypium hirsutum HOM05D002593 ORTHO05D006476 3.1e-22 108.2 86 68.6
Gorai.006G006800 Gossypium raimondii HOM05D002593 ORTHO05D006476 3.1e-22 108.2 86 68.6
Lalb_Chr23g0272731 Lupinus albus HOM05D002593 ORTHO05D006476 4.0e-22 107.8 83 67.5
Psat7g043240 Pisum sativum HOM05D002593 ORTHO05D006476 4.0e-22 107.8 82 67.1
PSO170G1422 Papaver somniferum HOM05D002593 ORTHO05D006476 5.2e-22 107.5 86 62.8
AUR62000559 Chenopodium quinoa HOM05D002593 ORTHO05D006476 6.8e-22 107.1 81 67.9
PSO528G0279 Papaver somniferum HOM05D002593 ORTHO05D006476 6.8e-22 107.1 86 62.8
HanXRQChr03g0087641 Helianthus annuus HOM05D002593 ORTHO05D006476 8.9e-22 106.7 79 69.6
Gohir.A09G006100 Gossypium hirsutum HOM05D002593 ORTHO05D006476 1.2e-21 106.3 86 68.6
Thecc.01G142600 Theobroma cacao HOM05D002593 ORTHO05D006476 1.2e-21 106.3 82 64.6
Lj4g0024429 Lotus japonicus HOM05D002593 ORTHO05D006476 2.6e-21 105.1 82 65.9
Medtr8g094800 Medicago truncatula HOM05D002593 ORTHO05D006476 3.4e-21 104.8 83 63.9
Ah.06g188520 Amaranthus hybridus HOM05D002593 ORTHO05D006476 4.4e-21 104.4 81 69.1
Aa31LG3G17840 Aethionema arabicum HOM05D002593 ORTHO05D006476 7.5e-21 103.6 81 65.4
Ca_17607_v3 Cicer arietinum L. HOM05D002593 ORTHO05D006476 7.5e-21 103.6 82 64.6
AT5G08720 Arabidopsis thaliana HOM05D002593 ORTHO05D006476 1.3e-20 102.8 84 61.9
Duzib187G0031 Durio zibethinus HOM05D002593 ORTHO05D006476 1.3e-20 102.8 86 65.1
Carub.0006s0769 Capsella rubella HOM05D002593 ORTHO05D006476 1.7e-20 102.4 85 62.4
AUR62006910 Chenopodium quinoa HOM05D002593 ORTHO05D006476 1.7e-20 102.4 82 67.1
AL6G19470 Arabidopsis lyrata HOM05D002593 ORTHO05D006476 2.9e-20 101.7 84 60.7
ECA248G3631 Erigeron canadensis HOM05D002593 ORTHO05D006476 2.9e-20 101.7 79 67.1
BcaB08g37230 Brassica carinata HOM05D002593 ORTHO05D006476 4.9e-20 100.9 86 61.6
C09p68260 Brassica napus HOM05D002593 ORTHO05D006476 4.9e-20 100.9 86 61.6
BolC9t59574H Brassica oleracea HOM05D002593 ORTHO05D006476 4.9e-20 100.9 86 61.6
Sp6g34150 Schrenkiella parvula HOM05D002593 ORTHO05D006476 8.3e-20 100.1 89 60.7
Sc06g0005350 Simmondsia chinensis HOM05D002593 ORTHO05D006476 8.3e-20 100.1 72 68.1
A10p28060 Brassica napus HOM05D002593 ORTHO05D006476 1.1e-19 99.8 86 61.6
BraA10t44855Z Brassica rapa HOM05D002593 ORTHO05D006476 1.1e-19 99.8 86 61.6
VMungo1309G1997 Vigna mungo HOM05D002593 ORTHO05D006476 1.1e-19 99.8 76 68.4
CARHR204290 Cardamine hirsuta HOM05D002593 ORTHO05D006476 1.9e-19 99.0 86 60.5
TPR.G37380 Trifolium pratense HOM05D002593 ORTHO05D006476 1.9e-19 99.0 81 61.7
Thhalv10015845m.g Eutrema salsugineum HOM05D002593 ORTHO05D006476 2.4e-19 98.6 85 60.0
arahy.Tifrunner.gnm1.ann1.06HUX3 Arachis hypogaea HOM05D002593 ORTHO05D006476 3.2e-19 98.2 82 63.4
Lsat_1_v5_gn_1_80920 Lactuca sativa HOM05D002593 ORTHO05D006476 3.2e-19 98.2 79 65.8
arahy.Tifrunner.gnm1.ann1.3HC2CW Arachis hypogaea HOM05D002593 ORTHO05D006476 9.2e-19 96.7 82 63.4
Glyma.04G207200 Glycine max HOM05D002593 ORTHO05D006476 9.2e-19 96.7 79 64.6
Glyma.08G003500 Glycine max HOM05D002593 ORTHO05D006476 9.2e-19 96.7 83 62.7
CDE02G1715 Ceratophyllum demersum HOM05D002593 ORTHO05D006476 1.2e-18 96.3 79 59.5
Glyma.05G195900 Glycine max HOM05D002593 ORTHO05D006476 2.7e-18 95.1 83 61.4
Phvul.002G276400 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 3.5e-18 94.7 83 62.7
Phvul.009G151900 Phaseolus vulgaris HOM05D002593 ORTHO05D006476 6.0e-18 94.0 79 62.0
Os03g0837900 Oryza sativa ssp. japonica HOM05D002593 ORTHO05D006476 7.8e-18 93.6 79 57.0
Haze_16323 Corylus avellana HOM05D002593 ORTHO05D006476 1.3e-17 92.8 61 73.8
VMungo0251G1864 Vigna mungo HOM05D002593 ORTHO05D006476 1.3e-17 92.8 83 59.0
TWI31G0641 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 9.5e-16 86.7 79 57.0
Hma1.2p1_0619F.1_g190380 Hydrangea macrophylla HOM05D002593 ORTHO05D006476 2.0e-13 79.0 46 78.3
arahy.Tifrunner.gnm1.ann1.2HG3UE Arachis hypogaea HOM05D002593 ORTHO05D006476 5.8e-13 77.4 80 60.0
arahy.Tifrunner.gnm1.ann1.VT8BG2 Arachis hypogaea HOM05D002593 ORTHO05D006476 5.8e-13 77.4 80 60.0
FAN26G1490 Fragaria x ananassa HOM05D002593 ORTHO05D006476 4.9e-12 74.3 50 70.0
arahy.Tifrunner.gnm1.ann1.898NT1 Arachis hypogaea HOM05D002593 ORTHO05D006476 8.4e-12 73.6 73 56.2
Actinidia20056 Actinidia chinensis HOM05D002593 ORTHO05D006476 4.1e-11 71.2 40 82.5
unitig_899.g14455 Utricularia gibba HOM05D002593 ORTHO05D006476 6.0e-10 67.4 74 51.4
SEGI_39457 Sequoiadendron giganteum HOM05D002593 ORTHO05D006476 9.0e-06 53.5 30 73.3


User provided reference genes

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