Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001243 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 5.1e-39 163.7 70 100.0
CSS0041800 Camellia sinensis var. sinensis HOM05D005112 ORTHO05D006681 5.3e-28 127.1 53 100.0
Dinv32028 Davidia involucrata HOM05D005112 ORTHO05D006681 2.9e-26 121.3 53 96.2
Lj3g0016153 Lotus japonicus HOM05D005112 ORTHO05D006681 1.9e-25 118.6 53 94.3
Actinidia02264 Actinidia chinensis HOM05D005112 ORTHO05D006681 7.2e-25 116.7 53 92.5
FvH4_7g03060 Fragaria vesca HOM05D005112 ORTHO05D006681 7.2e-25 116.7 53 90.6
FAN03G1408 Fragaria x ananassa HOM05D005112 ORTHO05D006681 7.2e-25 116.7 53 90.6
FAN06G0154 Fragaria x ananassa HOM05D005112 ORTHO05D006681 7.2e-25 116.7 53 90.6
FAN10G2928 Fragaria x ananassa HOM05D005112 ORTHO05D006681 7.2e-25 116.7 53 90.6
HanXRQChr14g0446561 Helianthus annuus HOM05D005112 ORTHO05D006681 7.2e-25 116.7 53 90.6
Nn7g36668 Nelumbo nucifera HOM05D005112 ORTHO05D006681 7.2e-25 116.7 53 90.6
Lj9C664G6 Lonicera japonica HOM05D005112 ORTHO05D006681 9.4e-25 116.3 53 92.5
RcHm_v2.0_Chr1g0324261 Rosa chinensis HOM05D005112 ORTHO05D006681 9.4e-25 116.3 53 90.6
Potri.001G027400 Populus trichocarpa HOM05D005112 ORTHO05D006681 1.2e-24 115.9 53 88.7
Sc14g0005780 Simmondsia chinensis HOM05D005112 ORTHO05D006681 1.2e-24 115.9 53 90.6
ECA238G0687 Erigeron canadensis HOM05D005112 ORTHO05D006681 1.6e-24 115.5 53 90.6
Rhsim01G0124100 Rhododendron simsii HOM05D005112 ORTHO05D006681 3.6e-24 114.4 53 88.7
Hund27779 Selenicereus undatus HOM05D005112 ORTHO05D006681 4.7e-24 114.0 53 86.8
Hund27782 Selenicereus undatus HOM05D005112 ORTHO05D006681 4.7e-24 114.0 53 86.8
SGA_v2.0_scaffold124G33611 Striga asiatica HOM05D005112 ORTHO05D006681 4.7e-24 114.0 53 88.7
GSVIVG01013489001 Vitis vinifera HOM05D005112 ORTHO05D006681 6.1e-24 113.6 53 88.7
Atru.chr12.1339 Acer truncatum HOM05D005112 ORTHO05D006681 7.9e-24 113.2 53 86.8
Lsat_1_v5_gn_2_64381 Lactuca sativa HOM05D005112 ORTHO05D006681 7.9e-24 113.2 53 86.8
Hma1.2p1_1202F.1_g266810 Hydrangea macrophylla HOM05D005112 ORTHO05D006681 1.8e-23 112.1 53 90.6
QL04p017903 Quercus lobata HOM05D005112 ORTHO05D006681 1.8e-23 112.1 53 86.8
Cfa010916 Carpinus fangiana HOM05D005112 ORTHO05D006681 2.3e-23 111.7 53 86.8
Nitab4.5_0000013g0140 Nicotiana tabacum HOM05D005112 ORTHO05D006681 2.3e-23 111.7 53 86.8
TAR636G0412 Trochodendron aralioides HOM05D005112 ORTHO05D006681 2.3e-23 111.7 53 88.7
Aa31LG10G13430 Aethionema arabicum HOM05D005112 ORTHO05D006681 3.0e-23 111.3 53 86.8
Ca_23958_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 3.0e-23 111.3 53 88.7
Ca_30885_v3 Cicer arietinum L. HOM05D005112 ORTHO05D006681 3.0e-23 111.3 53 88.7
Cc02_g30230 Coffea canephora HOM05D005112 ORTHO05D006681 3.0e-23 111.3 53 86.8
vmacro12695 Vaccinium macrocarpon HOM05D005112 ORTHO05D006681 3.0e-23 111.3 53 86.8
COL.COLO4_20752 Corchorus olitorius HOM05D005112 ORTHO05D006681 3.9e-23 110.9 53 86.8
Os01g0952600 Oryza sativa ssp. japonica HOM05D005112 ORTHO05D006681 3.9e-23 110.9 53 84.9
Duzib114G0621 Durio zibethinus HOM05D005112 ORTHO05D006681 5.1e-23 110.5 53 84.9
Lsat_1_v5_gn_2_30340 Lactuca sativa HOM05D005112 ORTHO05D006681 5.1e-23 110.5 53 83.0
Sabra01G0019900 Salix brachista HOM05D005112 ORTHO05D006681 5.1e-23 110.5 53 86.8
MSTRG.20515 Avicennia marina HOM05D005112 ORTHO05D006681 6.7e-23 110.2 53 83.0
CAN.G176.1 Capsicum annuum HOM05D005112 ORTHO05D006681 6.7e-23 110.2 53 86.8
Ciclev10030068m.g Citrus clementina HOM05D005112 ORTHO05D006681 6.7e-23 110.2 53 86.8
Lalb_Chr01g0007751 Lupinus albus HOM05D005112 ORTHO05D006681 6.7e-23 110.2 53 90.6
MD02G1287500 Malus domestica HOM05D005112 ORTHO05D006681 6.7e-23 110.2 53 86.8
Prupe.2G035600 Prunus persica HOM05D005112 ORTHO05D006681 6.7e-23 110.2 53 86.8
Prupe.2G035800 Prunus persica HOM05D005112 ORTHO05D006681 6.7e-23 110.2 53 86.8
Solyc08g014480.4 Solanum lycopersicum HOM05D005112 ORTHO05D006681 6.7e-23 110.2 53 86.8
Migut.B01228 Erythranthe guttata HOM05D005112 ORTHO05D006681 8.8e-23 109.8 53 86.8
Gohir.A06G175300 Gossypium hirsutum HOM05D005112 ORTHO05D006681 8.8e-23 109.8 53 84.9
Gohir.D06G185100 Gossypium hirsutum HOM05D005112 ORTHO05D006681 8.8e-23 109.8 53 84.9
Gorai.010G216500 Gossypium raimondii HOM05D005112 ORTHO05D006681 8.8e-23 109.8 53 84.9
MBI09_g12849_MAGBIO Magnolia biondii HOM05D005112 ORTHO05D006681 8.8e-23 109.8 53 84.9
TPR.G27820 Trifolium pratense HOM05D005112 ORTHO05D006681 8.8e-23 109.8 53 88.7
arahy.Tifrunner.gnm1.ann1.2RH035 Arachis hypogaea HOM05D005112 ORTHO05D006681 1.1e-22 109.4 53 90.6
Psat4g144800 Pisum sativum HOM05D005112 ORTHO05D006681 1.1e-22 109.4 53 86.8
PGR044G1764 Punica granatum HOM05D005112 ORTHO05D006681 1.1e-22 109.4 53 84.9
Thecc.10G157000 Theobroma cacao HOM05D005112 ORTHO05D006681 1.1e-22 109.4 53 84.9
Aqoxy2G00366 Aquilegia oxysepala HOM05D005112 ORTHO05D006681 2.0e-22 108.6 53 81.1
Medtr8g039160 Medicago truncatula HOM05D005112 ORTHO05D006681 2.0e-22 108.6 53 84.9
Peaxi162Scf00767g00521 Petunia axillaris HOM05D005112 ORTHO05D006681 2.0e-22 108.6 53 84.9
Potri.003G196500 Populus trichocarpa HOM05D005112 ORTHO05D006681 2.0e-22 108.6 51 86.3
Sabra03G0146500 Salix brachista HOM05D005112 ORTHO05D006681 2.0e-22 108.6 51 86.3
unitig_22.g5425 Utricularia gibba HOM05D005112 ORTHO05D006681 2.0e-22 108.6 53 83.0
CiPaw.13G013600 Carya illinoinensis HOM05D005112 ORTHO05D006681 2.6e-22 108.2 53 84.9
ClCG05G026800 Citrullus lanatus HOM05D005112 ORTHO05D006681 4.4e-22 107.5 53 81.1
DCAR_006636 Daucus carota HOM05D005112 ORTHO05D006681 4.4e-22 107.5 53 83.0
arahy.Tifrunner.gnm1.ann1.LQLC9G Arachis hypogaea HOM05D005112 ORTHO05D006681 5.7e-22 107.1 53 88.7
PSO339G5424 Papaver somniferum HOM05D005112 ORTHO05D006681 5.7e-22 107.1 53 84.9
Phvul.011G206800 Phaseolus vulgaris HOM05D005112 ORTHO05D006681 5.7e-22 107.1 53 84.9
MD07G1040000 Malus domestica HOM05D005112 ORTHO05D006681 7.4e-22 106.7 53 84.9
ATR0745G067 Amborella trichopoda HOM05D005112 ORTHO05D006681 9.7e-22 106.3 53 81.1
CARHR164340 Cardamine hirsuta HOM05D005112 ORTHO05D006681 1.3e-21 105.9 53 83.0
AUR62026862 Chenopodium quinoa HOM05D005112 ORTHO05D006681 1.3e-21 105.9 53 81.1
MELO3C012472.2 Cucumis melo HOM05D005112 ORTHO05D006681 1.3e-21 105.9 53 79.2
CsaV3_5G036760 Cucumis sativus L. HOM05D005112 ORTHO05D006681 1.3e-21 105.9 53 79.2
Glyma.13G197000 Glycine max HOM05D005112 ORTHO05D006681 1.3e-21 105.9 53 84.9
HPP92_012095 Vanilla planifolia HOM05D005112 ORTHO05D006681 1.7e-21 105.5 53 79.2
AL5G35490 Arabidopsis lyrata HOM05D005112 ORTHO05D006681 2.2e-21 105.1 53 83.0
AT3G54440 Arabidopsis thaliana HOM05D005112 ORTHO05D006681 2.2e-21 105.1 53 83.0
TWI38G0195 Tripterygium wilfordii HOM05D005112 ORTHO05D006681 2.2e-21 105.1 53 81.1
VMungo1127G0803 Vigna mungo HOM05D005112 ORTHO05D006681 2.2e-21 105.1 53 83.0
Zm00001eb140720 Zea mays HOM05D005112 ORTHO05D006681 2.2e-21 105.1 53 84.9
EL10Ac2g02802 Beta vulgaris HOM05D005112 ORTHO05D006681 2.8e-21 104.8 53 81.1
Manes.04G159700 Manihot esculenta HOM05D005112 ORTHO05D006681 2.8e-21 104.8 53 81.1
BcaB02g08488 Brassica carinata HOM05D005112 ORTHO05D006681 3.7e-21 104.4 53 81.1
BcaC02g09069 Brassica carinata HOM05D005112 ORTHO05D006681 3.7e-21 104.4 53 81.1
A04p05380 Brassica napus HOM05D005112 ORTHO05D006681 3.7e-21 104.4 53 81.1
C04p38070 Brassica napus HOM05D005112 ORTHO05D006681 3.7e-21 104.4 53 81.1
BolC4t25382H Brassica oleracea HOM05D005112 ORTHO05D006681 3.7e-21 104.4 53 81.1
BraA04t16238Z Brassica rapa HOM05D005112 ORTHO05D006681 3.7e-21 104.4 53 81.1
Thhalv10010080m.g Eutrema salsugineum HOM05D005112 ORTHO05D006681 3.7e-21 104.4 53 81.1
Sp5g07980 Schrenkiella parvula HOM05D005112 ORTHO05D006681 3.7e-21 104.4 53 81.1
THA.LOC104824194 Tarenaya hassleriana HOM05D005112 ORTHO05D006681 3.7e-21 104.4 53 83.0
Cpa.g.sc540.3 Carica papaya HOM05D005112 ORTHO05D006681 4.8e-21 104.0 53 79.2
Carub.0005s2104 Capsella rubella HOM05D005112 ORTHO05D006681 6.3e-21 103.6 53 81.1
Oeu042660.1 Olea europaea HOM05D005112 ORTHO05D006681 6.3e-21 103.6 53 81.1
Sopen08g005470 Solanum pennellii HOM05D005112 ORTHO05D006681 6.3e-21 103.6 53 83.0
Sed0008595 Sechium edule HOM05D005112 ORTHO05D006681 1.4e-20 102.4 53 77.4
AUR62032651 Chenopodium quinoa HOM05D005112 ORTHO05D006681 4.1e-20 100.9 53 77.4
Eucgr.J01181 Eucalyptus grandis HOM05D005112 ORTHO05D006681 6.9e-20 100.1 53 81.1
CANSAT56G3144 Cannabis sativa HOM05D005112 ORTHO05D006681 3.4e-19 97.8 53 81.1
Mapoly0086s0033 Marchantia polymorpha HOM05D005112 ORTHO05D006681 1.1e-17 92.8 53 69.8
CBR_g32018 Chara braunii HOM05D005112 ORTHO05D006681 2.5e-17 91.7 53 71.7
SMO266G0060 Selaginella moellendorffii HOM05D005112 ORTHO05D006681 2.1e-16 88.6 53 69.8
Pp3c7_1630 Physcomitrium patens HOM05D005112 ORTHO05D006681 6.1e-16 87.0 53 69.8
AagrBONN_evm.TU.Sc2ySwM_368.212 Anthoceros agrestis HOM05D005112 ORTHO05D006681 2.2e-13 78.6 54 66.7
MCO01G649 Micromonas commoda HOM05D005112 ORTHO05D006681 3.7e-13 77.8 51 66.7
Cre08.g379450 Chlamydomonas reinhardtii HOM05D005112 ORTHO05D006681 2.1e-08 62.0 56 50.0


User provided reference genes

Program Settings