Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001204 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 1.7e-70 269.2 135 100.0
CSS0005618 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 7.8e-28 127.5 126 57.1
CSS0048442 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 1.0e-27 127.1 63 95.2
CSS0046983 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D016428 6.6e-27 124.4 63 93.7
CSS0021224 Camellia sinensis var. sinensis HOM05D001366 ORTHO05D003220 1.3e-25 120.2 65 86.2
Gohir.D01G150200 Gossypium hirsutum HOM05D001366 ORTHO05D003220 1.3e-19 100.1 65 69.2
Gorai.002G186200 Gossypium raimondii HOM05D001366 ORTHO05D003220 1.3e-19 100.1 65 69.2
Gohir.A01G159950 Gossypium hirsutum HOM05D001366 ORTHO05D003220 3.0e-19 99.0 65 69.2
Dinv15253 Davidia involucrata HOM05D001366 ORTHO05D003220 3.9e-19 98.6 65 70.8
Hma1.2p1_0223F.1_g094185 Hydrangea macrophylla HOM05D001366 ORTHO05D003220 3.9e-19 98.6 76 61.8
Rhsim12G0042000 Rhododendron simsii HOM05D001366 ORTHO05D003220 3.9e-19 98.6 65 72.3
Hma1.2p1_0344F.1_g131080 Hydrangea macrophylla HOM05D001366 ORTHO05D016428 5.1e-19 98.2 63 71.4
Haze_12225 Corylus avellana HOM05D001366 ORTHO05D003220 6.7e-19 97.8 65 69.2
QL03p058693 Quercus lobata HOM05D001366 ORTHO05D003220 6.7e-19 97.8 65 69.2
vmacro01143 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 6.7e-19 97.8 65 70.8
Cfa009191 Carpinus fangiana HOM05D001366 ORTHO05D003220 8.7e-19 97.4 65 67.7
Sabra10G0023900 Salix brachista HOM05D001366 ORTHO05D003220 8.7e-19 97.4 65 67.7
Thecc.02G256300 Theobroma cacao HOM05D001366 ORTHO05D003220 8.7e-19 97.4 65 69.2
Dinv24813 Davidia involucrata HOM05D001366 ORTHO05D003220 1.5e-18 96.7 65 67.7
Rhsim12G0113000 Rhododendron simsii HOM05D001366 ORTHO05D003220 1.9e-18 96.3 65 70.8
TWI75G1447 Tripterygium wilfordii HOM05D001366 ORTHO05D003220 2.5e-18 95.9 65 67.7
Gohir.A12G144400 Gossypium hirsutum HOM05D001366 ORTHO05D003220 3.3e-18 95.5 65 67.7
Peaxi162Scf00515g00133 Petunia axillaris HOM05D001366 ORTHO05D003220 3.3e-18 95.5 65 69.2
SalBow2G1604 Salvia bowleyana HOM05D001366 ORTHO05D003220 3.3e-18 95.5 65 66.2
Potri.008G188150 Populus trichocarpa HOM05D001366 ORTHO05D003220 4.3e-18 95.1 65 66.2
Actinidia37409 Actinidia chinensis HOM05D001366 ORTHO05D016428 5.6e-18 94.7 76 59.2
MBI16_g14597_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D003220 5.6e-18 94.7 65 66.2
Actinidia15071 Actinidia chinensis HOM05D001366 ORTHO05D003220 7.4e-18 94.4 65 67.7
CiPaw.05G184800 Carya illinoinensis HOM05D001366 ORTHO05D003220 7.4e-18 94.4 65 67.7
Duzib268G0758 Durio zibethinus HOM05D001366 ORTHO05D003220 7.4e-18 94.4 65 66.2
TWI18G0188 Tripterygium wilfordii HOM05D001366 ORTHO05D003220 7.4e-18 94.4 65 67.7
COL.COLO4_24234 Corchorus olitorius HOM05D001366 ORTHO05D003220 9.6e-18 94.0 65 64.6
Gohir.D12G149000 Gossypium hirsutum HOM05D001366 ORTHO05D003220 1.3e-17 93.6 65 66.2
Gorai.008G160400 Gossypium raimondii HOM05D001366 ORTHO05D003220 1.3e-17 93.6 65 66.2
Nn4g22680 Nelumbo nucifera HOM05D001366 ORTHO05D003220 1.3e-17 93.6 65 66.2
Potri.010G044100 Populus trichocarpa HOM05D001366 ORTHO05D003220 1.6e-17 93.2 65 63.1
GSVIVG01013806001 Vitis vinifera HOM05D001366 ORTHO05D003220 1.6e-17 93.2 65 66.2
Cpa.g.sc69.90 Carica papaya HOM05D001366 ORTHO05D003220 2.8e-17 92.4 65 66.2
DCAR_031129 Daucus carota HOM05D001366 ORTHO05D003220 2.8e-17 92.4 65 64.6
Lalb_Chr16g0392241 Lupinus albus HOM05D001366 ORTHO05D003220 3.6e-17 92.0 65 66.2
Atru.chr11.2087 Acer truncatum HOM05D001366 ORTHO05D003220 4.8e-17 91.7 65 69.2
HanXRQChr12g0371851 Helianthus annuus HOM05D001366 ORTHO05D003220 4.8e-17 91.7 65 69.2
TAR622G0036 Trochodendron aralioides HOM05D001366 ORTHO05D003220 4.8e-17 91.7 77 58.4
MSTRG.577 Avicennia marina HOM05D001366 ORTHO05D003220 6.2e-17 91.3 65 61.5
FvH4_4g25800 Fragaria vesca HOM05D001366 ORTHO05D003220 6.2e-17 91.3 76 56.6
FAN07G2766 Fragaria x ananassa HOM05D001366 ORTHO05D003220 6.2e-17 91.3 76 56.6
FAN12G2701 Fragaria x ananassa HOM05D001366 ORTHO05D003220 6.2e-17 91.3 76 56.6
FAN12G3618 Fragaria x ananassa HOM05D001366 ORTHO05D003220 6.2e-17 91.3 76 56.6
RcHm_v2.0_Chr4g0433251 Rosa chinensis HOM05D001366 ORTHO05D003220 6.2e-17 91.3 65 64.6
PGSC0003DMG400007677 Solanum tuberosum HOM05D001366 ORTHO05D003220 6.2e-17 91.3 65 67.7
Prupe.1G248900 Prunus persica HOM05D001366 ORTHO05D003220 8.1e-17 90.9 65 66.2
DCAR_007067 Daucus carota HOM05D001366 ORTHO05D003220 1.1e-16 90.5 62 67.7
Solyc05g005020.4 Solanum lycopersicum HOM05D001366 ORTHO05D003220 1.1e-16 90.5 65 67.7
Sopen05g001030 Solanum pennellii HOM05D001366 ORTHO05D003220 1.1e-16 90.5 65 67.7
PGR119G2090 Punica granatum HOM05D001366 ORTHO05D003220 1.4e-16 90.1 71 64.8
Sabra08G0142500 Salix brachista HOM05D001366 ORTHO05D003220 1.4e-16 90.1 65 63.1
CAN.G447.9 Capsicum annuum HOM05D001366 ORTHO05D003220 1.8e-16 89.7 65 67.7
Migut.L01476 Erythranthe guttata HOM05D001366 ORTHO05D003220 1.8e-16 89.7 65 64.6
FAN22G0388 Fragaria x ananassa HOM05D001366 ORTHO05D003220 1.8e-16 89.7 84 51.2
THA.LOC104823655 Tarenaya hassleriana HOM05D001366 ORTHO05D003220 2.4e-16 89.4 65 66.2
Cc11_g15490 Coffea canephora HOM05D001366 ORTHO05D003220 4.0e-16 88.6 65 63.1
PSO832G0819 Papaver somniferum HOM05D001366 ORTHO05D003220 4.0e-16 88.6 65 61.5
BcaC07g38588 Brassica carinata HOM05D001366 ORTHO05D003220 5.3e-16 88.2 65 63.1
C08p13950 Brassica napus HOM05D001366 ORTHO05D003220 5.3e-16 88.2 65 63.1
BolC8t49029H Brassica oleracea HOM05D001366 ORTHO05D003220 5.3e-16 88.2 65 63.1
AUR62005429 Chenopodium quinoa HOM05D001366 ORTHO05D003220 5.3e-16 88.2 65 63.1
MD16G1097800 Malus domestica HOM05D001366 ORTHO05D003220 5.3e-16 88.2 65 61.5
vmacro16213 Vaccinium macrocarpon HOM05D001366 ORTHO05D003220 5.3e-16 88.2 71 63.4
BraA08t35295Z Brassica rapa HOM05D001366 ORTHO05D003220 6.9e-16 87.8 65 63.1
CANSAT01G0055 Cannabis sativa HOM05D001366 ORTHO05D003220 6.9e-16 87.8 65 58.5
Aa31LG1G4070 Aethionema arabicum HOM05D001366 ORTHO05D003220 1.2e-15 87.0 65 63.1
Manes.13G026800 Manihot esculenta HOM05D001366 ORTHO05D003220 1.2e-15 87.0 65 63.1
PSO063G5092 Papaver somniferum HOM05D001366 ORTHO05D003220 1.2e-15 87.0 65 60.0
AL1G21690 Arabidopsis lyrata HOM05D001366 ORTHO05D003220 1.5e-15 86.7 65 63.1
AUR62014090 Chenopodium quinoa HOM05D001366 ORTHO05D003220 1.5e-15 86.7 65 61.5
Lsat_1_v5_gn_8_153980 Lactuca sativa HOM05D001366 ORTHO05D003220 1.5e-15 86.7 65 61.5
BcaC07g38627 Brassica carinata HOM05D001366 ORTHO05D003220 2.0e-15 86.3 65 61.5
A08p33790 Brassica napus HOM05D001366 ORTHO05D003220 2.0e-15 86.3 65 61.5
Ciclev10030499m.g Citrus clementina HOM05D001366 ORTHO05D003220 2.0e-15 86.3 76 56.6
Lj6C809G13 Lonicera japonica HOM05D001366 ORTHO05D003220 2.0e-15 86.3 67 61.2
MSTRG.7915 Avicennia marina HOM05D001366 ORTHO05D003220 2.6e-15 85.9 66 59.1
MD13G1096800 Malus domestica HOM05D001366 ORTHO05D003220 2.6e-15 85.9 65 61.5
Glyma.08G283700 Glycine max HOM05D001366 ORTHO05D003220 4.5e-15 85.1 65 61.5
EL10Ac6g13726 Beta vulgaris HOM05D001366 ORTHO05D003220 7.6e-15 84.3 65 61.5
Thhalv10006565m.g Eutrema salsugineum HOM05D001366 ORTHO05D003220 7.6e-15 84.3 65 61.5
AT1G10760 Arabidopsis thaliana HOM05D001366 ORTHO05D003220 9.9e-15 84.0 65 61.5
BcaB08g37373 Brassica carinata HOM05D001366 ORTHO05D003220 9.9e-15 84.0 65 61.5
C08p48530 Brassica napus HOM05D001366 ORTHO05D003220 9.9e-15 84.0 65 61.5
A09p64660 Brassica napus HOM05D001366 ORTHO05D003220 1.3e-14 83.6 65 61.5
BolC8t52392H Brassica oleracea HOM05D001366 ORTHO05D003220 1.3e-14 83.6 65 61.5
Sp1g09460 Schrenkiella parvula HOM05D001366 ORTHO05D003220 1.3e-14 83.6 65 60.0
Glyma.18G142500 Glycine max HOM05D001366 ORTHO05D003220 1.7e-14 83.2 65 60.0
Aqoxy3G02840 Aquilegia oxysepala HOM05D001366 ORTHO05D003220 2.2e-14 82.8 72 58.3
Carub.0001s1031 Capsella rubella HOM05D001366 ORTHO05D003220 2.2e-14 82.8 65 60.0
Medtr8g069760 Medicago truncatula HOM05D001366 ORTHO05D003220 2.2e-14 82.8 65 60.0
Phvul.003G062900 Phaseolus vulgaris HOM05D001366 ORTHO05D003220 2.2e-14 82.8 65 60.0
TAR374G1700 Trochodendron aralioides HOM05D001366 ORTHO05D003220 2.2e-14 82.8 66 60.6
BraA09t41826Z Brassica rapa HOM05D001366 ORTHO05D003220 2.9e-14 82.4 65 60.0
Psat4g114240 Pisum sativum HOM05D001366 ORTHO05D003220 2.9e-14 82.4 65 61.5
TPR.G23137 Trifolium pratense HOM05D001366 ORTHO05D003220 2.9e-14 82.4 65 58.5
CARHR010980 Cardamine hirsuta HOM05D001366 ORTHO05D003220 3.8e-14 82.0 65 61.5
Eucgr.H02531 Eucalyptus grandis HOM05D001366 ORTHO05D003220 3.8e-14 82.0 68 60.3
CDE04G3560 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 4.9e-14 81.6 65 60.0
Ah.02g130140 Amaranthus hybridus HOM05D001366 ORTHO05D003220 8.4e-14 80.9 65 60.0
Hund06013 Selenicereus undatus HOM05D001366 ORTHO05D003220 8.4e-14 80.9 66 57.6
arahy.Tifrunner.gnm1.ann1.52KDTF Arachis hypogaea HOM05D001366 ORTHO05D003220 1.1e-13 80.5 65 60.0
arahy.Tifrunner.gnm1.ann1.N2L19B Arachis hypogaea HOM05D001366 ORTHO05D003220 1.1e-13 80.5 65 60.0
Ca_22500_v3 Cicer arietinum L. HOM05D001366 ORTHO05D003220 1.1e-13 80.5 65 56.9
ClCG05G025580 Citrullus lanatus HOM05D001366 ORTHO05D003220 1.1e-13 80.5 65 58.5
ECA233G2601 Erigeron canadensis HOM05D001366 ORTHO05D003220 1.4e-13 80.1 65 60.0
unitig_26.g10358 Utricularia gibba HOM05D001366 ORTHO05D003220 1.4e-13 80.1 66 57.6
Lj4g0012667 Lotus japonicus HOM05D001366 ORTHO05D003220 1.9e-13 79.7 63 61.9
ATR1152G017 Amborella trichopoda HOM05D001366 ORTHO05D003220 4.2e-13 78.6 65 52.3
Ah.03g133220 Amaranthus hybridus HOM05D001366 ORTHO05D003220 7.1e-13 77.8 65 58.5
CDE06G0295 Ceratophyllum demersum HOM05D001366 ORTHO05D003220 9.3e-13 77.4 63 60.3
Lsat_1_v5_gn_4_4920 Lactuca sativa HOM05D001366 ORTHO05D003220 9.3e-13 77.4 76 53.9
Sc04g0009380 Simmondsia chinensis HOM05D001366 ORTHO05D003220 1.2e-12 77.0 65 58.5
Oeu038612.1 Olea europaea HOM05D001366 ORTHO05D003220 1.6e-12 76.6 66 59.1
MELO3C011972.2 Cucumis melo HOM05D001366 ORTHO05D003220 1.8e-11 73.2 65 53.8
ECA234G4650 Erigeron canadensis HOM05D001366 ORTHO05D003220 1.8e-11 73.2 65 55.4
CsaV3_5G031320 Cucumis sativus L. HOM05D001366 ORTHO05D003220 3.9e-11 72.0 65 53.8
Os06g0498400 Oryza sativa ssp. japonica HOM05D001366 ORTHO05D003220 8.7e-11 70.9 66 50.0
HPP92_003084 Vanilla planifolia HOM05D001366 ORTHO05D003220 8.7e-11 70.9 65 50.8
HanXRQChr12g0384161 Helianthus annuus HOM05D001366 ORTHO05D003220 1.1e-10 70.5 65 52.3
Sed0006405 Sechium edule HOM05D001366 ORTHO05D003220 1.1e-10 70.5 66 54.5
Sed0024840 Sechium edule HOM05D001366 ORTHO05D003220 1.5e-10 70.1 65 52.3
SGA_v2.0_scaffold228G43260 Striga asiatica HOM05D001366 ORTHO05D003220 1.5e-10 70.1 96 38.5
Mapoly0038s0029 Marchantia polymorpha HOM05D001366 ORTHO05D003220 2.5e-10 69.3 75 44.0
AagrBONN_evm.TU.Sc2ySwM_344.4529 Anthoceros agrestis HOM05D001366 ORTHO05D003220 2.1e-09 66.2 84 36.9
Pp3c8_6520 Physcomitrium patens HOM05D001366 ORTHO05D003220 4.8e-09 65.1 65 46.2
Pp3c8_6536 Physcomitrium patens HOM05D001366 ORTHO05D003220 4.8e-09 65.1 65 46.2
SEGI_00676 Sequoiadendron giganteum HOM05D001366 ORTHO05D016428 4.8e-09 65.1 61 49.2
Gohir.A01G159900 Gossypium hirsutum HOM05D001366 ORTHO05D003220 1.1e-08 63.9 65 52.3
Zm00001eb278140 Zea mays HOM05D001366 ORTHO05D003220 2.4e-08 62.8 82 40.2
MBI16_g27903_MAGBIO Magnolia biondii HOM05D001366 ORTHO05D003220 9.0e-08 60.8 63 44.4
SEGI_00062 Sequoiadendron giganteum HOM05D001366 ORTHO05D016210 9.0e-08 60.8 74 43.2
Nn5g29817 Nelumbo nucifera HOM05D001366 ORTHO05D003220 2.6e-07 59.3 63 46.0
Pp3c3_11200 Physcomitrium patens HOM05D001366 ORTHO05D003220 1.0e-06 57.4 81 35.8
TAR628G1058 Trochodendron aralioides HOM05D001366 ORTHO05D003220 1.3e-06 57.0 63 42.9
ATR0767G073 Amborella trichopoda HOM05D001366 ORTHO05D003220 3.8e-06 55.5 60 43.3
QL09p018643 Quercus lobata HOM05D001366 ORTHO05D003220 8.4e-06 54.3 63 41.3


User provided reference genes

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