Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.4e-184 649.4 329 100.0
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.2e-161 572.4 345 87.0
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.2e-161 572.4 345 87.0
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 1.5e-157 559.7 344 84.3
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 2.2e-156 555.8 339 87.6
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 3.7e-156 555.1 344 83.4
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 7.0e-155 550.8 344 83.4
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 7.2e-152 540.8 346 81.8
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 2.3e-150 535.8 344 81.4
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 2.0e-149 532.7 335 81.5
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 5.7e-149 531.2 346 80.3
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 9.8e-149 530.4 344 79.9
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 2.4e-147 525.8 346 80.1
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.5e-146 521.9 348 78.2
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 3.5e-146 521.9 348 78.4
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 3.5e-146 521.9 353 76.8
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 5.9e-146 521.2 344 78.2
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 7.8e-146 520.8 344 78.2
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 1.3e-145 520.0 344 77.9
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 1.3e-145 520.0 351 77.8
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 1.7e-145 519.6 347 78.1
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.7e-145 519.6 347 78.1
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 2.3e-145 519.2 347 78.1
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 2.9e-145 518.8 345 77.7
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 5.0e-145 518.1 344 76.7
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 6.6e-145 517.7 346 79.5
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 6.6e-145 517.7 344 78.5
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 6.6e-145 517.7 345 78.6
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 6.6e-145 517.7 344 77.0
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 8.6e-145 517.3 344 78.8
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 1.1e-144 516.9 319 81.8
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 1.9e-144 516.2 352 77.8
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 2.5e-144 515.8 344 77.6
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 7.3e-144 514.2 344 77.6
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 7.3e-144 514.2 344 76.5
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 9.5e-144 513.8 348 75.9
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 1.2e-143 513.5 347 77.2
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 1.6e-143 513.1 350 76.9
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 1.6e-143 513.1 348 75.9
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 1.6e-143 513.1 344 76.5
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 2.1e-143 512.7 343 77.6
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 2.1e-143 512.7 335 77.9
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 2.1e-143 512.7 345 76.2
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 4.7e-143 511.5 344 77.3
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 4.7e-143 511.5 345 76.8
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 4.7e-143 511.5 328 79.9
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 8.0e-143 510.8 347 76.4
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 1.4e-142 510.0 356 77.0
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 4.0e-142 508.4 347 76.9
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 6.8e-142 507.7 350 76.0
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 1.5e-141 506.5 345 81.2
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 2.0e-141 506.1 344 75.3
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 2.6e-141 505.8 344 76.2
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 3.4e-141 505.4 344 76.2
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 4.4e-141 505.0 342 77.2
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 4.4e-141 505.0 351 75.2
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 7.5e-141 504.2 342 76.6
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 7.5e-141 504.2 340 76.5
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.3e-140 503.4 351 74.9
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 1.3e-140 503.4 348 73.9
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 1.7e-140 503.1 345 75.9
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 1.7e-140 503.1 348 73.9
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 2.2e-140 502.7 354 77.4
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 2.9e-140 502.3 347 75.5
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 2.9e-140 502.3 361 74.2
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 3.7e-140 501.9 348 73.6
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 1.1e-139 500.4 338 76.3
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 1.1e-139 500.4 345 75.7
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.8e-139 499.6 348 74.4
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 2.4e-139 499.2 348 75.3
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 9.2e-139 497.3 330 76.4
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 2.0e-138 496.1 338 75.1
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 2.0e-138 496.1 321 78.8
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 2.7e-138 495.7 350 75.4
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 3.5e-138 495.4 372 71.0
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 5.9e-138 494.6 321 78.5
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 1.0e-137 493.8 338 75.4
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 1.0e-137 493.8 344 74.1
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.3e-137 493.4 350 74.3
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.3e-137 493.4 347 74.1
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 3.9e-137 491.9 347 73.8
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 8.6e-137 490.7 344 73.8
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 1.2e-135 486.9 344 73.3
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 1.6e-135 486.5 341 76.2
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 2.8e-135 485.7 347 73.8
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 3.6e-135 485.3 341 75.7
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 8.0e-135 484.2 324 76.9
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 1.1e-134 483.8 347 73.8
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 1.8e-134 483.0 346 72.8
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 8.9e-134 480.7 344 75.3
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 1.2e-133 480.3 318 76.7
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 1.5e-133 479.9 353 71.4
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 2.0e-133 479.6 344 71.8
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 2.0e-133 479.6 344 71.8
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 2.0e-133 479.6 344 71.8
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 5.8e-133 478.0 344 71.8
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 5.8e-133 478.0 344 71.8
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 9.8e-133 477.2 353 71.1
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 1.7e-132 476.5 348 71.6
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 1.7e-132 476.5 344 72.1
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 2.9e-132 475.7 350 70.6
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 2.9e-132 475.7 350 70.6
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 6.4e-132 474.6 350 70.6
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 1.9e-131 473.0 351 70.1
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 2.4e-131 472.6 355 69.3
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 4.1e-131 471.9 357 69.5
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 5.4e-131 471.5 356 69.4
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 2.0e-130 469.5 344 70.6
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 4.6e-130 468.4 347 70.9
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 1.9e-128 463.0 355 68.7
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 2.1e-127 459.5 344 68.9
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 2.1e-127 459.5 329 73.9
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 8.1e-127 457.6 365 66.6
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 4.0e-126 455.3 329 73.3
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 4.9e-124 448.4 388 64.9
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 3.2e-123 445.7 329 72.0
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 3.5e-122 442.2 329 72.6
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 6.6e-121 438.0 299 74.9
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 7.3e-120 434.5 348 66.7
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 2.8e-119 432.6 348 64.9
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 6.2e-119 431.4 347 66.6
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 6.2e-119 431.4 347 66.6
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 2.4e-118 429.5 348 63.8
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 4.0e-118 428.7 348 63.8
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 5.2e-118 428.3 345 64.9
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 2.6e-117 426.0 320 65.9
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 7.6e-117 424.5 295 75.6
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 7.6e-117 424.5 295 75.6
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 7.6e-117 424.5 346 63.9
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.3e-116 423.7 344 66.6
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.7e-114 416.0 315 66.0
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 4.3e-112 408.7 315 64.8
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 3.2e-107 392.5 231 84.0
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 3.5e-106 389.0 315 61.6
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 2.5e-104 382.9 274 72.3
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 5.6e-104 381.7 318 60.4
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 4.9e-100 368.6 228 78.9
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.9e-99 366.7 318 58.2
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 1.8e-97 360.1 324 56.2
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 5.5e-91 338.6 198 84.3
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 1.8e-86 323.6 255 65.9
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 2.5e-80 303.1 246 65.9
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 9.4e-75 284.6 300 51.7
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 1.9e-72 276.9 185 79.5
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 1.3e-71 274.2 215 67.0
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 5.5e-59 232.3 165 67.9
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 8.8e-57 224.9 182 59.3
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 8.8e-57 224.9 182 59.3
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 1.1e-56 224.6 119 92.4
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 1.5e-56 224.2 131 84.7
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 4.4e-56 222.6 123 88.6
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 2.2e-52 210.3 122 79.5
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 2.7e-45 186.8 164 62.8
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 2.7e-45 186.8 164 62.8
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 3.2e-43 179.9 164 61.0
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 3.1e-30 136.7 118 66.1
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 3.8e-28 129.8 155 47.7
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 1.9e-27 127.5 70 90.0
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 7.3e-27 125.6 92 75.0
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.2e-26 124.8 92 71.7
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 2.0e-21 107.5 78 67.9
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 2.3e-20 104.0 71 71.8
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 1.1e-19 101.7 180 38.9
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.9e-14 84.3 51 78.4
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 2.4e-14 84.0 78 56.4
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 7.3e-11 72.4 51 72.5
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.7e-10 69.7 118 37.3
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 4.4e-08 63.2 42 78.6
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 9.9e-08 62.0 36 72.2
RhsimUnG0176100 Rhododendron simsii HOM05D000026 ORTHO05D000127 7.1e-06 55.8 53 60.4


User provided reference genes

Program Settings