Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.6e-85 318.2 155 100.0
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.6e-80 302.8 159 95.0
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.3e-54 214.2 155 73.5
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 7.3e-54 214.2 154 72.1
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 8.1e-53 210.7 155 72.9
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 5.2e-52 208.0 155 71.0
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 5.8e-51 204.5 152 72.4
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 1.3e-50 203.4 155 69.7
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.3e-50 203.4 164 69.5
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 2.9e-50 202.2 152 71.1
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 8.4e-50 200.7 155 71.0
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 1.1e-49 200.3 155 70.3
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 1.4e-49 199.9 173 65.9
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 2.4e-49 199.1 156 68.6
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 2.4e-49 199.1 149 71.1
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 4.2e-49 198.4 147 71.4
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 1.2e-48 196.8 155 67.1
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 1.2e-48 196.8 145 72.4
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 1.6e-48 196.4 161 66.5
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.6e-48 196.4 155 67.1
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.1e-48 196.1 147 70.7
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 2.1e-48 196.1 147 70.7
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 3.5e-48 195.3 155 66.5
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 4.6e-48 194.9 155 65.8
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 4.6e-48 194.9 145 72.4
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 6.0e-48 194.5 151 70.2
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 1.0e-47 193.7 155 65.8
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 1.0e-47 193.7 155 65.8
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 3.0e-47 192.2 155 65.8
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 3.0e-47 192.2 156 66.0
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 3.0e-47 192.2 145 69.7
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 3.0e-47 192.2 149 66.4
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 3.9e-47 191.8 154 70.1
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 3.9e-47 191.8 147 68.7
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 8.7e-47 190.7 147 66.0
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 1.1e-46 190.3 145 69.7
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.1e-46 190.3 146 68.5
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 1.5e-46 189.9 155 64.5
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 1.9e-46 189.5 144 67.4
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 2.5e-46 189.1 155 65.2
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 5.6e-46 188.0 157 65.0
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 5.6e-46 188.0 163 66.3
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 7.3e-46 187.6 153 64.7
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 7.3e-46 187.6 152 64.5
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 1.3e-45 186.8 152 66.4
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 1.3e-45 186.8 145 67.6
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 1.3e-45 186.8 155 65.8
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.6e-45 186.4 153 64.1
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 2.1e-45 186.0 155 65.8
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 2.1e-45 186.0 153 65.4
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 2.8e-45 185.7 147 66.0
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 4.8e-45 184.9 151 65.6
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 4.8e-45 184.9 155 63.2
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 6.2e-45 184.5 152 63.8
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 8.1e-45 184.1 147 66.7
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 8.1e-45 184.1 153 66.7
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 8.1e-45 184.1 149 65.8
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 8.1e-45 184.1 150 64.7
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 1.1e-44 183.7 147 66.0
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.1e-44 183.7 126 71.4
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 1.4e-44 183.3 147 65.3
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 1.4e-44 183.3 145 66.9
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 1.8e-44 183.0 149 64.4
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 2.4e-44 182.6 144 66.7
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 2.4e-44 182.6 143 68.5
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.1e-44 182.2 126 70.6
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 3.1e-44 182.2 151 62.9
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 4.0e-44 181.8 149 65.1
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 6.9e-44 181.0 143 67.1
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 6.9e-44 181.0 135 67.4
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 9.0e-44 180.6 147 63.9
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 1.2e-43 180.3 151 64.9
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 1.5e-43 179.9 155 61.9
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.0e-43 179.5 145 63.4
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 2.6e-43 179.1 126 69.0
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.6e-43 179.1 152 63.2
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.6e-43 179.1 159 62.3
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 3.4e-43 178.7 149 64.4
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 3.4e-43 178.7 147 61.2
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 3.4e-43 178.7 147 63.3
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 4.4e-43 178.3 149 64.4
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 4.4e-43 178.3 149 63.8
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 5.8e-43 177.9 142 66.9
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 7.6e-43 177.6 145 64.8
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 7.6e-43 177.6 141 66.0
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 7.6e-43 177.6 145 64.8
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 7.6e-43 177.6 145 64.8
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 9.9e-43 177.2 145 64.1
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.7e-42 176.4 149 61.7
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 2.2e-42 176.0 136 66.9
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 2.2e-42 176.0 158 60.1
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 4.9e-42 174.9 149 63.1
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 4.9e-42 174.9 138 68.1
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.9e-41 172.9 136 66.2
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 1.9e-41 172.9 136 66.2
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 2.4e-41 172.6 136 66.2
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 3.2e-41 172.2 140 65.7
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 1.6e-40 169.9 159 59.1
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 6.0e-40 167.9 114 71.1
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 7.8e-40 167.5 184 54.9
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 1.0e-39 167.2 123 67.5
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 3.9e-39 165.2 150 56.7
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 6.6e-39 164.5 111 71.2
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 6.6e-39 164.5 129 65.9
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.9e-38 162.9 155 55.5
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 1.9e-38 162.9 155 55.5
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 9.6e-38 160.6 115 67.0
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 4.8e-37 158.3 152 58.6
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 4.8e-37 158.3 119 63.9
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 2.4e-36 156.0 140 57.1
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 3.1e-36 155.6 119 62.2
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 3.1e-36 155.6 129 62.0
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 6.9e-36 154.5 145 57.2
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 2.0e-35 152.9 131 58.8
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 9.9e-35 150.6 123 61.0
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 4.2e-33 145.2 108 66.7
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.4e-33 144.8 107 66.4
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 7.1e-33 144.4 107 66.4
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 4.6e-32 141.7 132 54.5
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 8.7e-31 137.5 153 52.3
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 6.2e-29 131.3 94 66.0
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 3.1e-28 129.0 120 57.5
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 6.9e-28 127.9 111 64.0
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.4e-27 125.6 122 59.8
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 2.9e-26 122.5 156 49.4
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 4.9e-26 121.7 82 74.4
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.9e-25 119.8 113 61.1
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 1.9e-25 119.8 65 78.5
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 3.2e-25 119.0 150 50.7
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 1.3e-23 113.6 59 79.7
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 6.2e-21 104.8 101 60.4
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 3.4e-19 99.0 76 71.1
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 4.5e-19 98.6 76 76.3
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.0e-15 87.4 107 47.7
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 1.3e-13 80.5 67 65.7
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.8e-13 79.3 68 66.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.8e-10 68.9 48 70.8
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 4.2e-09 65.5 83 45.8
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 3.6e-08 62.4 42 64.3
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.0e-07 60.8 34 70.6
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 8.8e-07 57.8 53 60.4
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 8.8e-07 57.8 48 64.6
CSS0048463 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 7.4e-06 54.7 29 69.0
CSS0011814 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 9.7e-06 54.3 41 56.1


User provided reference genes

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