Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001073 Camellia sinensis var. sinensis HOM05D005582 ORTHO05D007028 0.0e+00 2879.4 1404 100.0
CSS0025323 Camellia sinensis var. sinensis HOM05D005582 ORTHO05D007028 0.0e+00 2048.9 1600 70.6
Dinv29525 Davidia involucrata HOM05D005582 ORTHO05D007028 0.0e+00 1686.8 1605 58.8
Rhsim04G0247200 Rhododendron simsii HOM05D005582 ORTHO05D007028 0.0e+00 1639.4 1598 58.4
vmacro08001 Vaccinium macrocarpon HOM05D005582 ORTHO05D007028 0.0e+00 1635.9 1606 58.1
Lj3C839G18 Lonicera japonica HOM05D005582 ORTHO05D007028 0.0e+00 1566.6 1598 55.3
QL06p013845 Quercus lobata HOM05D005582 ORTHO05D007028 0.0e+00 1502.6 1595 53.2
QL93p1872_0012 Quercus lobata HOM05D005582 ORTHO05D007028 0.0e+00 1500.0 1595 53.2
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 0.0e+00 1473.8 1589 52.2
Prupe.1G108200 Prunus persica HOM05D005582 ORTHO05D007028 0.0e+00 1463.0 1599 52.2
Atru.chr11.54 Acer truncatum HOM05D005582 ORTHO05D007028 0.0e+00 1452.6 1597 52.0
GSVIVG01017603001 Vitis vinifera HOM05D005582 ORTHO05D007028 0.0e+00 1445.6 1608 52.0
Cfa015717 Carpinus fangiana HOM05D005582 ORTHO05D007028 0.0e+00 1441.8 1553 52.4
CiPaw.02G071000 Carya illinoinensis HOM05D005582 ORTHO05D007028 0.0e+00 1428.3 1585 51.2
Duzib151G1162 Durio zibethinus HOM05D005582 ORTHO05D007028 0.0e+00 1422.1 1594 50.8
Ciclev10004134m.g Citrus clementina HOM05D005582 ORTHO05D007028 0.0e+00 1417.5 1592 51.6
Potri.010G153300 Populus trichocarpa HOM05D005582 ORTHO05D007028 0.0e+00 1417.5 1605 50.7
FAN07G0038 Fragaria x ananassa HOM05D005582 ORTHO05D007028 0.0e+00 1414.4 1587 50.8
FvH4_4g21250 Fragaria vesca HOM05D005582 ORTHO05D007028 0.0e+00 1413.7 1588 50.9
MD13G1143700 Malus domestica HOM05D005582 ORTHO05D007028 0.0e+00 1410.2 1607 51.0
Actinidia01057 Actinidia chinensis HOM05D005582 ORTHO05D007028 0.0e+00 1404.4 1344 58.7
Sabra10G0117900 Salix brachista HOM05D005582 ORTHO05D007028 0.0e+00 1399.4 1631 49.5
Gohir.A09G067200 Gossypium hirsutum HOM05D005582 ORTHO05D007028 0.0e+00 1392.1 1596 50.4
Gohir.D09G066800 Gossypium hirsutum HOM05D005582 ORTHO05D007028 0.0e+00 1388.2 1589 50.3
Gorai.006G081300 Gossypium raimondii HOM05D005582 ORTHO05D007028 0.0e+00 1387.5 1590 50.3
Thecc.04G310500 Theobroma cacao HOM05D005582 ORTHO05D007028 0.0e+00 1387.1 1587 50.2
Nn4g25411 Nelumbo nucifera HOM05D005582 ORTHO05D007028 0.0e+00 1385.2 1597 50.3
Manes.15G004000 Manihot esculenta HOM05D005582 ORTHO05D007028 0.0e+00 1384.0 1609 49.8
TWI53G0357 Tripterygium wilfordii HOM05D005582 ORTHO05D007028 0.0e+00 1369.0 1593 49.7
GSVIVG01017662001 Vitis vinifera HOM05D005582 ORTHO05D007028 0.0e+00 1361.3 1581 50.8
FAN12G2136 Fragaria x ananassa HOM05D005582 ORTHO05D007028 0.0e+00 1357.8 1551 50.2
RcHm_v2.0_Chr4g0426871 Rosa chinensis HOM05D005582 ORTHO05D007028 0.0e+00 1357.8 1424 52.8
Glyma.10G243400 Glycine max HOM05D005582 ORTHO05D007028 0.0e+00 1344.3 1585 49.0
Glyma.20G150800 Glycine max HOM05D005582 ORTHO05D007028 0.0e+00 1338.6 1586 48.7
VMungo0720G3059 Vigna mungo HOM05D005582 ORTHO05D007028 0.0e+00 1326.2 1590 48.3
Lj5g0009067 Lotus japonicus HOM05D005582 ORTHO05D007028 0.0e+00 1325.1 1597 48.7
Phvul.007G062300 Phaseolus vulgaris HOM05D005582 ORTHO05D007028 0.0e+00 1325.1 1590 48.0
Sed0007110 Sechium edule HOM05D005582 ORTHO05D007028 0.0e+00 1320.8 1589 47.7
CsaV3_6G000150 Cucumis sativus L. HOM05D005582 ORTHO05D007028 0.0e+00 1317.8 1588 47.3
DCAR_023392 Daucus carota HOM05D005582 ORTHO05D007028 0.0e+00 1315.8 1604 46.9
HanXRQChr05g0148391 Helianthus annuus HOM05D005582 ORTHO05D007028 0.0e+00 1315.4 1579 48.2
Lalb_Chr06g0160761 Lupinus albus HOM05D005582 ORTHO05D007028 0.0e+00 1314.7 1585 48.8
PSO170G3214 Papaver somniferum HOM05D005582 ORTHO05D007028 0.0e+00 1310.8 1591 48.0
ClCG06G004260 Citrullus lanatus HOM05D005582 ORTHO05D007028 0.0e+00 1307.0 1507 48.6
arahy.Tifrunner.gnm1.ann1.6ZCT8S Arachis hypogaea HOM05D005582 ORTHO05D007028 0.0e+00 1303.5 1590 47.9
Medtr1g102710 Medicago truncatula HOM05D005582 ORTHO05D007028 0.0e+00 1301.6 1587 48.2
CANSAT01G1159 Cannabis sativa HOM05D005582 ORTHO05D007028 0.0e+00 1297.0 1585 47.9
MELO3C021237.2 Cucumis melo HOM05D005582 ORTHO05D007028 0.0e+00 1294.3 1611 46.7
Sc25g0001750 Simmondsia chinensis HOM05D005582 ORTHO05D007028 0.0e+00 1287.7 1592 47.7
Psat6g203520 Pisum sativum HOM05D005582 ORTHO05D007028 0.0e+00 1283.1 1473 49.7
arahy.Tifrunner.gnm1.ann1.ZZ97E1 Arachis hypogaea HOM05D005582 ORTHO05D007028 0.0e+00 1276.9 1586 47.9
Cpa.g.sc146.39 Carica papaya HOM05D005582 ORTHO05D007028 0.0e+00 1276.9 1473 49.5
PGR031G2985 Punica granatum HOM05D005582 ORTHO05D007028 0.0e+00 1275.8 1602 46.9
Ca_10846_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 0.0e+00 1275.0 1583 47.8
ECA246G0223 Erigeron canadensis HOM05D005582 ORTHO05D007028 0.0e+00 1264.6 1587 46.8
Oeu022697.1 Olea europaea HOM05D005582 ORTHO05D007028 0.0e+00 1262.7 1560 47.9
Cc03_g00260 Coffea canephora HOM05D005582 ORTHO05D007028 0.0e+00 1258.8 1612 46.2
Aqoxy5G02775 Aquilegia oxysepala HOM05D005582 ORTHO05D007028 0.0e+00 1250.3 1607 45.4
Migut.N00012 Erythranthe guttata HOM05D005582 ORTHO05D007028 0.0e+00 1239.6 1589 46.8
Lsat_1_v5_gn_6_117861 Lactuca sativa HOM05D001037 ORTHO05D007028 0.0e+00 1235.3 1559 46.9
TPR.G26104 Trifolium pratense HOM05D005582 ORTHO05D007028 0.0e+00 1235.3 1441 49.9
EL10Ac3g06266 Beta vulgaris HOM05D005582 ORTHO05D007028 0.0e+00 1228.0 1616 44.3
AUR62002565 Chenopodium quinoa HOM05D005582 ORTHO05D007028 0.0e+00 1225.7 1605 44.7
Peaxi162Scf01194g00137 Petunia axillaris HOM05D005582 ORTHO05D007028 0.0e+00 1209.9 1456 48.1
MSTRG.19398 Avicennia marina HOM05D005582 ORTHO05D007028 0.0e+00 1204.9 1455 48.5
Hund12246 Selenicereus undatus HOM05D005582 ORTHO05D007028 0.0e+00 1196.8 1555 45.7
AUR62029987 Chenopodium quinoa HOM05D005582 ORTHO05D007028 0.0e+00 1187.9 1594 44.2
Eucgr.B02209 Eucalyptus grandis HOM05D005582 ORTHO05D007028 0.0e+00 1184.5 1380 49.2
Sopen12g033750 Solanum pennellii HOM05D005582 ORTHO05D007028 0.0e+00 1177.2 1593 44.6
Ah.07g203770 Amaranthus hybridus HOM05D005582 ORTHO05D007028 0.0e+00 1165.6 1595 44.2
SGA_v2.0_scaffold227G43203 Striga asiatica HOM05D005582 ORTHO05D007028 0.0e+00 1160.6 1600 44.4
THA.LOC104818852 Tarenaya hassleriana HOM05D005582 ORTHO05D007028 0.0e+00 1153.7 1571 44.4
Thhalv10012423m.g Eutrema salsugineum HOM05D005582 ORTHO05D007028 0.0e+00 1134.0 1573 44.1
A10p21030 Brassica napus HOM05D005582 ORTHO05D007028 0.0e+00 1133.2 1583 44.0
AT5G18525 Arabidopsis thaliana HOM05D005582 ORTHO05D007028 0.0e+00 1117.8 1583 44.2
ATR0796G139 Amborella trichopoda HOM05D005582 ORTHO05D007028 0.0e+00 1116.7 1608 43.2
Sp6g25800 Schrenkiella parvula HOM05D005582 ORTHO05D007028 0.0e+00 1116.3 1585 43.7
C09p57960 Brassica napus HOM05D005582 ORTHO05D007028 0.0e+00 1114.4 1576 43.4
BolC9t58663H Brassica oleracea HOM05D005582 ORTHO05D007028 0.0e+00 1113.2 1587 43.3
BraA10t44167Z Brassica rapa HOM05D005582 ORTHO05D007028 0.0e+00 1083.2 1553 43.3
Nitab4.5_0004665g0020 Nicotiana tabacum HOM05D005582 ORTHO05D007028 0.0e+00 1078.2 1608 42.4
Aa31LG11G11190 Aethionema arabicum HOM05D005582 ORTHO05D007028 2.5e-310 1069.3 1578 42.7
BcaC04g18671 Brassica carinata HOM05D005582 ORTHO05D007028 3.6e-309 1065.4 1521 43.2
Nitab4.5_0000895g0160 Nicotiana tabacum HOM05D005582 ORTHO05D007028 4.6e-304 1048.5 1271 48.4
HPP92_010030 Vanilla planifolia HOM05D005582 ORTHO05D007028 2.1e-296 1023.1 1626 39.6
Zm00001eb131030 Zea mays HOM05D005582 ORTHO05D007028 3.0e-295 1019.2 1482 41.6
BcaB08g36665 Brassica carinata HOM05D005582 ORTHO05D007028 1.2e-293 1013.8 1572 41.7
AL6G29800 Arabidopsis lyrata HOM05D005582 ORTHO05D007028 1.3e-290 1003.8 1559 41.5
Carub.0006s1680 Capsella rubella HOM05D005582 ORTHO05D007028 2.2e-250 870.2 1177 45.4
Ca_10845_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 5.1e-239 832.4 1157 44.3
CAN.G484.83 Capsicum annuum HOM05D005582 ORTHO05D007028 5.0e-234 815.8 1110 44.1
SalBow5G3991 Salvia bowleyana HOM05D005582 ORTHO05D007028 7.2e-233 812.0 1178 43.5
TAR362G0979 Trochodendron aralioides HOM05D005582 ORTHO05D007028 4.9e-205 719.5 774 53.9
CDE02G3337 Ceratophyllum demersum HOM05D005582 ORTHO05D007028 1.7e-189 667.9 1209 37.7
BcaB08g36669 Brassica carinata HOM05D005582 ORTHO05D007028 9.5e-185 652.1 792 48.0
Solyc12g099010.3 Solanum lycopersicum HOM05D005582 ORTHO05D007028 4.0e-183 646.7 779 48.8
Mapoly0075s0059 Marchantia polymorpha HOM05D005582 ORTHO05D007028 2.9e-173 614.0 1470 31.6
CARHR194490 Cardamine hirsuta HOM05D005582 ORTHO05D007028 1.2e-168 598.6 996 39.6
TAR362G1290 Trochodendron aralioides HOM05D005582 ORTHO05D007028 1.9e-153 548.1 613 50.4
AagrBONN_evm.TU.Sc2ySwM_344.3353 Anthoceros agrestis HOM05D005582 ORTHO05D007028 8.4e-149 532.7 1420 30.0
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 2.4e-143 514.6 727 44.7
DCAR_023431 Daucus carota HOM05D005582 ORTHO05D007028 6.1e-131 473.4 558 49.3
Duzib151G0781 Durio zibethinus HOM05D005582 ORTHO05D007028 7.4e-113 413.3 417 54.0
Migut.K01509 Erythranthe guttata HOM05D005582 ORTHO05D007028 1.8e-103 382.1 445 49.0
SMO203G0100 Selaginella moellendorffii HOM05D005582 ORTHO05D007028 1.2e-97 362.8 690 34.5
SEGI_34586 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 3.1e-95 354.8 634 35.6
BcaB08g36667 Brassica carinata HOM05D005582 ORTHO05D007028 4.1e-95 354.4 463 44.3
SEGI_37408 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 2.0e-94 352.1 597 37.7
HPP92_015254 Vanilla planifolia HOM05D005582 ORTHO05D007028 1.4e-87 329.3 855 32.7
SEGI_12439 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 1.2e-86 326.2 457 40.3
Ca_29759_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 6.1e-83 313.9 380 49.7
COL.COLO4_34544 Corchorus olitorius HOM05D005582 ORTHO05D007028 2.0e-73 282.3 378 45.0
SMO203G0276 Selaginella moellendorffii HOM05D005582 ORTHO05D007028 4.3e-68 264.6 486 34.8
MBI18_g09609_MAGBIO Magnolia biondii HOM05D005582 ORTHO05D007028 1.2e-57 229.9 217 56.7
unitig_26.g10616 Utricularia gibba HOM05D005582 ORTHO05D007028 3.0e-37 162.2 207 48.3
CDE02G0728 Ceratophyllum demersum HOM05D005582 ORTHO05D007028 1.2e-33 150.2 140 51.4
PRCOL_00005869 Prasinoderma coloniale HOM05D005582 ORTHO05D007028 2.0e-33 149.4 400 30.2
Ca_10843_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 3.0e-29 135.6 154 51.3
Ca_10844_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 3.0e-29 135.6 154 51.3
SEGI_01668 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 1.2e-25 123.6 111 57.7
CBR_g49230 Chara braunii HOM05D005582 ORTHO05D007028 8.4e-24 117.5 128 49.2
SEGI_29964 Sequoiadendron giganteum HOM05D000557 ORTHO05D007028 6.3e-19 101.3 104 42.3
Cre17.g732650 Chlamydomonas reinhardtii HOM05D005582 ORTHO05D007028 4.1e-18 98.6 170 35.3
SEGI_19987 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 5.0e-16 91.7 113 46.0
Rhsim03G0109500 Rhododendron simsii HOM05D005582 ORTHO05D004029 6.5e-16 91.3 65 78.5
CBR_g49232 Chara braunii HOM05D005582 ORTHO05D007028 8.5e-16 90.9 500 22.2
SEGI_30621 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 2.5e-15 89.4 110 46.4
Nitab4.5_0006377g0020 Nicotiana tabacum HOM05D002159 ORTHO05D005625 1.4e-10 73.6 88 48.9
BcaB08g36668 Brassica carinata HOM05D005582 ORTHO05D007028 4.5e-09 68.6 85 45.9
TAR362G0682 Trochodendron aralioides HOM05D005582 ORTHO05D007028 2.9e-08 65.9 113 37.2
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 8.5e-08 64.3 86 39.5
Hund09551 Selenicereus undatus HOM05D000921 ORTHO05D004153 8.5e-08 64.3 120 33.3
Zm00001eb056940 Zea mays HOM05D000921 ORTHO05D004153 1.1e-07 63.9 93 38.7
ATR0665G073 Amborella trichopoda HOM05D000921 ORTHO05D004153 1.9e-07 63.2 103 35.9
AUR62032282 Chenopodium quinoa HOM05D000921 ORTHO05D004153 2.5e-07 62.8 120 32.5
Os02g0162733 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004782 3.2e-07 62.4 70 40.0
AUR62011970 Chenopodium quinoa HOM05D000921 ORTHO05D004153 4.2e-07 62.0 120 31.7
SMO236G0048 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 4.2e-07 62.0 93 39.8
CiPaw.07G086700 Carya illinoinensis HOM05D000921 ORTHO05D004153 5.5e-07 61.6 111 31.5
HanXRQChr04g0113931 Helianthus annuus HOM05D000921 ORTHO05D004153 5.5e-07 61.6 107 35.5
Pp3c6_5700 Physcomitrium patens HOM05D000921 ORTHO05D004153 5.5e-07 61.6 158 28.5
Pp3c6_5706 Physcomitrium patens HOM05D000921 ORTHO05D004153 5.5e-07 61.6 158 28.5
Ah.11g050210 Amaranthus hybridus HOM05D000921 ORTHO05D004153 7.2e-07 61.2 120 30.8
CSS0010203 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 9.4e-07 60.8 95 35.8
CSS0042369 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 9.4e-07 60.8 95 35.8
ECA236G3737 Erigeron canadensis HOM05D000921 ORTHO05D004153 9.4e-07 60.8 115 33.0
MD03G1257800 Malus domestica HOM05D000921 ORTHO05D004153 1.2e-06 60.5 120 30.0
TPR.G34892 Trifolium pratense HOM05D000921 ORTHO05D004153 1.2e-06 60.5 44 59.1
Mapoly0082s0083 Marchantia polymorpha HOM05D000921 ORTHO05D004153 1.6e-06 60.1 86 38.4
PSO461G0055 Papaver somniferum HOM05D000921 ORTHO05D004153 1.6e-06 60.1 85 40.0
MD11G1278500 Malus domestica HOM05D000921 ORTHO05D004153 2.1e-06 59.7 120 30.0
Pp3c16_11700 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.7e-06 59.3 86 38.4
Pp3c16_11705 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.7e-06 59.3 86 38.4
Actinidia19962 Actinidia chinensis HOM05D000921 ORTHO05D004153 3.6e-06 58.9 42 59.5
Lsat_1_v5_gn_7_27920 Lactuca sativa HOM05D005582 ORTHO05D007028 3.6e-06 58.9 45 64.4
MSTRG.21525 Avicennia marina HOM05D000921 ORTHO05D004153 4.7e-06 58.5 42 59.5
EL10Ac5g10491 Beta vulgaris HOM05D000921 ORTHO05D004153 4.7e-06 58.5 120 30.0
Ciclev10018426m.g Citrus clementina HOM05D000921 ORTHO05D004153 4.7e-06 58.5 115 33.0
FAN15G1223 Fragaria x ananassa HOM05D000921 ORTHO05D004153 6.1e-06 58.2 90 36.7
FAN20G3205 Fragaria x ananassa HOM05D000921 ORTHO05D004153 6.1e-06 58.2 90 36.7
Lsat_1_v5_gn_8_93941 Lactuca sativa HOM05D000921 ORTHO05D004153 6.1e-06 58.2 42 59.5
PSO210G1924 Papaver somniferum HOM05D000921 ORTHO05D004153 6.1e-06 58.2 42 59.5
Peaxi162Scf00259g00414 Petunia axillaris HOM05D000921 ORTHO05D004153 6.1e-06 58.2 42 59.5
Prupe.8G234500 Prunus persica HOM05D000921 ORTHO05D004153 6.1e-06 58.2 90 36.7
RcHm_v2.0_Chr6g0289881 Rosa chinensis HOM05D000921 ORTHO05D004153 6.1e-06 58.2 90 36.7
Solyc09g065700.3 Solanum lycopersicum HOM05D000921 ORTHO05D004153 6.1e-06 58.2 42 59.5
Sopen09g027450 Solanum pennellii HOM05D000921 ORTHO05D004153 6.1e-06 58.2 42 59.5
THA.LOC104825985 Tarenaya hassleriana HOM05D000921 ORTHO05D004153 6.1e-06 58.2 115 31.3
TWI12G1077 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 6.1e-06 58.2 42 59.5
TWI18G0154 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 6.1e-06 58.2 42 59.5
vmacro02613 Vaccinium macrocarpon HOM05D000921 ORTHO05D004153 6.1e-06 58.2 42 59.5
CAN.G1072.6 Capsicum annuum HOM05D000921 ORTHO05D004153 7.9e-06 57.8 42 59.5
ClCG09G007420 Citrullus lanatus HOM05D000921 ORTHO05D004153 7.9e-06 57.8 93 35.5
COL.COLO4_09186 Corchorus olitorius HOM05D000921 ORTHO05D004153 7.9e-06 57.8 42 59.5
DCAR_002700 Daucus carota HOM05D000921 ORTHO05D004153 7.9e-06 57.8 106 33.0
Nn6g33594 Nelumbo nucifera HOM05D000921 ORTHO05D004153 7.9e-06 57.8 42 59.5


User provided reference genes

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