Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 8.1e-158 560.5 300 100.0
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 1.9e-127 459.5 298 79.5
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 2.6e-124 449.1 287 80.5
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.6e-118 429.9 296 74.3
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.5e-116 423.3 299 72.9
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 4.5e-116 421.8 301 73.4
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.6e-116 421.0 246 83.7
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 7.6e-116 421.0 306 76.8
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 2.2e-115 419.5 304 71.4
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 2.2e-115 419.5 299 73.2
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 2.9e-115 419.1 327 69.7
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 4.9e-115 418.3 298 73.2
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 6.5e-115 417.9 304 73.0
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 1.1e-114 417.2 299 72.2
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 2.5e-114 416.0 299 71.9
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 7.1e-114 414.5 268 77.6
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 1.2e-113 413.7 246 81.3
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 1.6e-113 413.3 319 67.4
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 1.6e-113 413.3 319 67.4
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 4.6e-113 411.8 305 71.1
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.0e-112 410.6 246 80.9
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.8e-112 409.8 299 70.6
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 1.8e-112 409.8 299 70.9
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 3.0e-112 409.1 328 66.8
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 5.1e-112 408.3 305 71.8
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.5e-111 406.8 246 80.1
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 2.5e-111 406.0 244 80.3
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 2.5e-111 406.0 293 70.3
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 3.3e-111 405.6 306 70.6
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 7.4e-111 404.4 301 69.1
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 1.6e-110 403.3 275 72.7
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 1.6e-110 403.3 296 69.6
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 4.8e-110 401.7 246 78.9
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 8.2e-110 401.0 305 68.2
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 8.2e-110 401.0 283 71.4
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 1.8e-109 399.8 300 68.0
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.8e-109 399.8 246 79.3
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 1.8e-109 399.8 298 68.1
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 3.1e-109 399.1 285 70.5
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 4.1e-109 398.7 246 79.3
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 9.0e-109 397.5 298 68.8
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 1.5e-108 396.7 246 77.2
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 2.0e-108 396.4 300 69.3
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 5.9e-108 394.8 272 73.9
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 7.6e-108 394.4 302 66.9
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 7.6e-108 394.4 309 66.3
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 1.7e-107 393.3 246 76.8
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 1.7e-107 393.3 302 67.5
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 2.2e-107 392.9 305 66.6
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 2.9e-107 392.5 305 66.6
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 3.8e-107 392.1 310 65.2
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 8.4e-107 391.0 289 68.9
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 1.1e-106 390.6 285 69.8
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 1.4e-106 390.2 246 76.0
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 1.4e-106 390.2 311 64.6
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 1.4e-106 390.2 311 64.6
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 2.5e-106 389.4 287 69.7
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.5e-106 389.4 287 69.7
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 3.2e-106 389.0 246 74.4
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 3.2e-106 389.0 295 68.1
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 4.2e-106 388.7 243 77.8
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 7.2e-106 387.9 310 64.8
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 7.2e-106 387.9 310 64.8
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 7.2e-106 387.9 268 70.9
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.3e-106 387.5 287 69.3
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 9.3e-106 387.5 300 67.0
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.2e-105 387.1 298 68.5
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 1.2e-105 387.1 268 70.1
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 1.2e-105 387.1 268 70.1
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 1.2e-105 387.1 275 70.9
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 1.6e-105 386.7 296 65.5
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 1.6e-105 386.7 316 65.8
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 1.6e-105 386.7 301 65.8
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 2.1e-105 386.3 302 68.5
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 2.1e-105 386.3 272 69.5
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 2.7e-105 386.0 246 74.4
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 3.5e-105 385.6 246 75.2
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 4.6e-105 385.2 246 75.2
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 7.9e-105 384.4 273 70.3
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 7.9e-105 384.4 291 67.7
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 2.3e-104 382.9 304 66.1
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 5.1e-104 381.7 305 68.2
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 5.1e-104 381.7 246 74.0
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 2.5e-103 379.4 311 64.3
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 4.3e-103 378.6 247 74.1
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 1.3e-102 377.1 246 72.8
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 1.6e-102 376.7 290 73.4
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 1.6e-102 376.7 290 73.4
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 2.8e-102 375.9 306 64.1
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 6.3e-102 374.8 247 73.3
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.4e-101 373.6 309 65.4
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 3.1e-101 372.5 315 64.8
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.5e-100 370.2 278 67.3
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 3.4e-100 369.0 235 75.7
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 7.7e-100 367.9 289 65.4
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.7e-99 366.7 315 63.8
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 6.5e-99 364.8 301 64.5
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.4e-98 363.6 285 65.6
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 7.2e-98 361.3 247 70.9
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.8e-96 356.7 235 72.8
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 3.0e-96 355.9 302 63.2
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 5.1e-96 355.1 255 71.0
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 3.3e-95 352.4 308 60.1
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 3.3e-95 352.4 281 65.1
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 7.4e-95 351.3 289 63.7
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 7.4e-95 351.3 310 63.9
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 6.3e-94 348.2 281 64.4
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 5.3e-93 345.1 296 62.2
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 1.0e-91 340.9 249 72.3
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 1.3e-91 340.5 301 64.1
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.7e-91 340.1 237 68.8
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 1.4e-90 337.0 306 61.1
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.5e-90 336.3 306 58.5
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 4.2e-90 335.5 246 67.9
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.4e-85 320.5 240 64.2
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 5.5e-82 308.5 241 63.5
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 2.7e-81 306.2 267 58.8
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 5.2e-80 302.0 250 60.0
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 4.4e-79 298.9 225 64.9
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 9.7e-79 297.7 240 61.2
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 5.3e-77 292.0 240 59.2
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 1.3e-75 287.3 240 58.8
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 4.2e-74 282.3 196 69.4
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 3.0e-72 276.2 255 56.5
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.5e-71 271.6 192 74.0
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.7e-70 270.4 300 49.3
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 4.8e-70 268.9 195 69.2
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 2.4e-69 266.5 166 77.7
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 6.5e-67 258.5 142 88.0
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 8.8e-64 248.1 213 57.3
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 2.6e-63 246.5 142 82.4
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 3.4e-63 246.1 142 83.1
Actinidia33626 Actinidia chinensis HOM05D004215 ORTHO05D005293 1.2e-60 237.7 182 69.8
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 8.0e-57 224.9 201 55.2
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 6.8e-56 221.9 125 88.8
vmacro01428 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 1.5e-50 204.1 159 74.2
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.3e-50 201.8 240 46.2
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 2.1e-49 200.3 114 86.0
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.2e-46 190.3 218 50.9
BolC5t33841H Brassica oleracea HOM05D004215 ORTHO05D005293 4.6e-44 182.6 132 69.7
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 8.6e-43 178.3 242 44.6
MCO13G089 Micromonas commoda HOM05D004215 ORTHO05D005293 3.3e-34 149.8 239 38.9
CBR_g23714 Chara braunii HOM05D004215 ORTHO05D005293 6.2e-33 145.6 236 40.3
MBI10_g46302_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 1.4e-29 134.4 84 75.0
arahy.Tifrunner.gnm1.ann1.B59VJ6 Arachis hypogaea HOM05D004215 ORTHO05D005293 3.2e-29 133.3 127 54.3
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 8.6e-27 125.2 82 70.7
BolC2t11573H Brassica oleracea HOM05D004215 ORTHO05D005293 8.1e-25 118.6 170 46.5
SMO201G0141 Selaginella moellendorffii HOM05D028400 ORTHO05D005293 1.1e-24 118.2 184 38.0
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 4.0e-24 116.3 86 66.3
Actinidia24608 Actinidia chinensis HOM05D004215 ORTHO05D005293 8.9e-24 115.2 58 91.4
BcaB07g30283 Brassica carinata HOM05D004215 ORTHO05D005293 3.2e-21 106.7 72 73.6
C02p55250 Brassica napus HOM05D004215 ORTHO05D005293 3.0e-19 100.1 207 37.7
Mapoly0118s0023 Marchantia polymorpha HOM05D004215 ORTHO05D018306 7.3e-18 95.5 271 29.2
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 7.3e-18 95.5 62 71.0
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.4e-16 91.3 50 88.0
BcaC03g17546 Brassica carinata HOM05D004215 ORTHO05D005293 1.8e-16 90.9 146 42.5
SMO356G0347 Selaginella moellendorffii HOM05D004215 ORTHO05D018306 2.4e-16 90.5 154 32.5
CBR_g8311 Chara braunii HOM05D004215 ORTHO05D018306 9.0e-16 88.6 163 33.7
Pp3c20_8810 Physcomitrium patens HOM05D004215 ORTHO05D018306 7.6e-15 85.5 142 33.1
AagrBONN_evm.TU.Sc2ySwM_228.585 Anthoceros agrestis HOM05D004215 ORTHO05D018306 3.8e-14 83.2 164 29.9
SEGI_37569 Sequoiadendron giganteum HOM05D004215 ORTHO05D018306 1.5e-10 71.2 142 31.7
PRCOL_00001993 Prasinoderma coloniale HOM05D004215 ORTHO05D005293 4.3e-10 69.7 156 31.4
C08p45130 Brassica napus HOM05D004215 ORTHO05D005293 3.4e-07 60.1 40 70.0
BolC8t52061H Brassica oleracea HOM05D004215 ORTHO05D005293 3.4e-07 60.1 40 70.0
Zm00001eb379240 Zea mays HOM05D000565 ORTHO05D004389 7.6e-07 58.9 172 25.0
PRCOL_00003073 Prasinoderma coloniale HOM05D004215 ORTHO05D018306 2.2e-06 57.4 133 34.6
AL1G32800 Arabidopsis lyrata HOM05D000565 ORTHO05D004389 2.9e-06 57.0 174 24.7
AT1G20020 Arabidopsis thaliana HOM05D000565 ORTHO05D004389 2.9e-06 57.0 174 24.7
Actinidia27648 Actinidia chinensis HOM05D004215 ORTHO05D052913 3.8e-06 56.6 157 31.2
Cre09.g401515 Chlamydomonas reinhardtii HOM05D055175 ORTHO05D044300 3.8e-06 56.6 174 25.9
Thhalv10007988m.g Eutrema salsugineum HOM05D000565 ORTHO05D004389 3.8e-06 56.6 174 24.7
CARHR020500 Cardamine hirsuta HOM05D000565 ORTHO05D004389 4.9e-06 56.2 172 26.2
Mapoly0062s0041 Marchantia polymorpha HOM05D000565 ORTHO05D004389 6.4e-06 55.8 174 24.7
Aa31LG7G4470 Aethionema arabicum HOM05D000565 ORTHO05D004389 8.4e-06 55.5 172 25.0


User provided reference genes

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