Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000898 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.2e-88 329.7 159 100.0
CSS0001095 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 2.7e-80 302.0 159 95.0
vmacro05790 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 1.8e-52 209.5 158 70.3
CSS0048749 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 3.2e-52 208.8 159 71.7
Actinidia06042 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.5e-51 205.3 159 71.1
Cfa007472 Carpinus fangiana HOM05D005035 ORTHO05D006141 1.7e-50 203.0 159 69.2
GSVIVG01032540001 Vitis vinifera HOM05D005035 ORTHO05D006141 1.9e-49 199.5 156 70.5
Actinidia33975 Actinidia chinensis HOM05D005035 ORTHO05D006141 3.3e-49 198.7 159 67.9
Rhsim10G0028700 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.3e-49 198.7 168 67.9
CiPaw.03G034300 Carya illinoinensis HOM05D005035 ORTHO05D006141 1.2e-48 196.8 156 69.2
MSTRG.3309 Avicennia marina HOM05D005035 ORTHO05D006141 2.8e-48 195.7 159 68.6
Sc06g0002600 Simmondsia chinensis HOM05D005035 ORTHO05D006141 2.8e-48 195.7 159 69.2
Rhsim10G0028000 Rhododendron simsii HOM05D005035 ORTHO05D006141 3.6e-48 195.3 177 64.4
Migut.H00159 Erythranthe guttata HOM05D005035 ORTHO05D006141 8.0e-48 194.1 160 66.9
Nn4g22913 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.0e-47 193.7 153 69.3
TAR371G0568 Trochodendron aralioides HOM05D005035 ORTHO05D006141 1.8e-47 193.0 151 69.5
Lsat_1_v5_gn_0_16560 Lactuca sativa HOM05D005035 ORTHO05D006141 4.0e-47 191.8 159 65.4
MD09G1039900 Malus domestica HOM05D005035 ORTHO05D006141 4.0e-47 191.8 149 70.5
Nitab4.5_0001952g0210 Nicotiana tabacum HOM05D005035 ORTHO05D006141 5.2e-47 191.4 159 65.4
TAR484G0003 Trochodendron aralioides HOM05D005035 ORTHO05D006141 6.8e-47 191.0 151 68.9
TAR629G3150 Trochodendron aralioides HOM05D005035 ORTHO05D006141 6.8e-47 191.0 151 68.9
Nitab4.5_0007185g0060 Nicotiana tabacum HOM05D005035 ORTHO05D006141 1.2e-46 190.3 159 64.8
Prupe.3G278500 Prunus persica HOM05D005035 ORTHO05D006141 1.2e-46 190.3 149 70.5
HanXRQChr17g0548081 Helianthus annuus HOM05D005035 ORTHO05D006141 1.5e-46 189.9 159 64.2
Manes.17G120300 Manihot esculenta HOM05D005035 ORTHO05D006141 2.6e-46 189.1 155 68.4
Solyc02g087230.3 Solanum lycopersicum HOM05D005035 ORTHO05D006141 3.4e-46 188.7 159 64.2
Sopen02g031970 Solanum pennellii HOM05D005035 ORTHO05D006141 3.4e-46 188.7 159 64.2
Haze_14625 Corylus avellana HOM05D005035 ORTHO05D006141 4.4e-46 188.3 159 66.0
Migut.K01356 Erythranthe guttata HOM05D005035 ORTHO05D006141 7.5e-46 187.6 160 64.4
CAN.G206.60 Capsicum annuum HOM05D005035 ORTHO05D006141 9.8e-46 187.2 159 64.2
MD17G1040500 Malus domestica HOM05D005035 ORTHO05D006141 9.8e-46 187.2 149 67.8
Manes.15G180500 Manihot esculenta HOM05D005035 ORTHO05D006141 1.3e-45 186.8 158 68.4
Potri.001G350900 Populus trichocarpa HOM05D005035 ORTHO05D006141 1.3e-45 186.8 153 64.7
PGR083G2790 Punica granatum HOM05D005035 ORTHO05D006141 1.7e-45 186.4 151 66.9
FvH4_6g50060 Fragaria vesca HOM05D005035 ORTHO05D006141 3.7e-45 185.3 149 67.8
PSO591G0214 Papaver somniferum HOM05D005035 ORTHO05D006141 3.7e-45 185.3 151 64.2
FAN05G0554 Fragaria x ananassa HOM05D005035 ORTHO05D006141 4.9e-45 184.9 150 66.7
Peaxi162Scf00129g00821 Petunia axillaris HOM05D005035 ORTHO05D006141 4.9e-45 184.9 159 62.9
MSTRG.23981 Avicennia marina HOM05D005035 ORTHO05D006141 6.4e-45 184.5 159 63.5
PSO832G3976 Papaver somniferum HOM05D005035 ORTHO05D006141 6.4e-45 184.5 148 65.5
DCAR_011194 Daucus carota HOM05D005035 ORTHO05D006141 1.4e-44 183.3 161 63.4
TWI56G1217 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 1.4e-44 183.3 156 62.8
SalBow1G8037 Salvia bowleyana HOM05D005035 ORTHO05D006141 3.2e-44 182.2 167 64.1
Cc07_g02630 Coffea canephora HOM05D005035 ORTHO05D006141 4.1e-44 181.8 157 62.4
RcHm_v2.0_Chr2g0170331 Rosa chinensis HOM05D005035 ORTHO05D006141 4.1e-44 181.8 149 65.8
SGA_v2.0_scaffold30G12503 Striga asiatica HOM05D005035 ORTHO05D006141 4.1e-44 181.8 159 64.2
TWI36G0797 Tripterygium wilfordii HOM05D005035 ORTHO05D006141 4.1e-44 181.8 157 62.4
Lalb_Chr06g0176451 Lupinus albus HOM05D005035 ORTHO05D006141 5.4e-44 181.4 156 64.7
ECA246G3539 Erigeron canadensis HOM05D005035 ORTHO05D006141 7.0e-44 181.0 159 64.2
Sabra16G0230300 Salix brachista HOM05D005035 ORTHO05D006141 7.0e-44 181.0 157 63.7
Lalb_Chr21g0319261 Lupinus albus HOM05D005035 ORTHO05D006141 1.2e-43 180.3 151 64.2
Aqoxy3G00882 Aquilegia oxysepala HOM05D005035 ORTHO05D006141 2.0e-43 179.5 155 63.9
Duzib147G0557 Durio zibethinus HOM05D005035 ORTHO05D006141 2.0e-43 179.5 157 65.0
Eucgr.J02172 Eucalyptus grandis HOM05D005035 ORTHO05D006141 2.0e-43 179.5 156 62.2
Glyma.13G069100 Glycine max HOM05D005035 ORTHO05D006141 2.7e-43 179.1 151 64.2
Lj2g0024232 Lotus japonicus HOM05D005035 ORTHO05D006141 2.7e-43 179.1 153 64.1
TPR.G31460 Trifolium pratense HOM05D005035 ORTHO05D006141 3.5e-43 178.7 154 63.0
Ca_04227_v3 Cicer arietinum L. HOM05D005035 ORTHO05D006141 4.6e-43 178.3 151 63.6
Gohir.A07G217600 Gossypium hirsutum HOM05D005035 ORTHO05D006141 4.6e-43 178.3 130 69.2
Lalb_Chr02g0159811 Lupinus albus HOM05D005035 ORTHO05D006141 4.6e-43 178.3 149 65.1
MBI14_g12780_MAGBIO Magnolia biondii HOM05D005035 ORTHO05D006141 4.6e-43 178.3 148 64.9
CANSAT21G0423 Cannabis sativa HOM05D005035 ORTHO05D006141 6.0e-43 177.9 151 64.9
Medtr6g008220 Medicago truncatula HOM05D005035 ORTHO05D006141 6.0e-43 177.9 153 62.7
Hund20034 Selenicereus undatus HOM05D005035 ORTHO05D006141 6.0e-43 177.9 147 66.7
Sp2g17120 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.0e-42 177.2 139 64.7
Thecc.04G003200 Theobroma cacao HOM05D005035 ORTHO05D006141 1.0e-42 177.2 153 63.4
Gohir.D07G224700 Gossypium hirsutum HOM05D005035 ORTHO05D006141 1.3e-42 176.8 130 68.5
Glyma.19G013800 Glycine max HOM05D005035 ORTHO05D006141 1.7e-42 176.4 147 65.3
Aa31LG9G1530 Aethionema arabicum HOM05D005035 ORTHO05D006141 2.3e-42 176.0 155 62.6
Thhalv10005082m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 3.0e-42 175.6 149 61.1
Gohir.A09G024500 Gossypium hirsutum HOM05D005035 ORTHO05D006141 3.0e-42 175.6 151 62.3
EL10Ac7g18004 Beta vulgaris HOM05D005035 ORTHO05D006141 3.9e-42 175.3 159 60.4
Hma1.2p1_0375F.1_g139040 Hydrangea macrophylla HOM05D005035 ORTHO05D006141 5.0e-42 174.9 155 60.0
AL3G42320 Arabidopsis lyrata HOM05D005035 ORTHO05D006141 6.6e-42 174.5 153 62.1
AT2G04700 Arabidopsis thaliana HOM05D005035 ORTHO05D006141 8.6e-42 174.1 153 62.1
Carub.0003s2630 Capsella rubella HOM05D005035 ORTHO05D006141 8.6e-42 174.1 153 61.4
MELO3C021510.2 Cucumis melo HOM05D005035 ORTHO05D006141 8.6e-42 174.1 130 66.9
CsaV3_5G037480 Cucumis sativus L. HOM05D005035 ORTHO05D006141 8.6e-42 174.1 151 59.6
BcaB06g27429 Brassica carinata HOM05D005035 ORTHO05D006141 1.1e-41 173.7 149 62.4
BolC4t26254H Brassica oleracea HOM05D005035 ORTHO05D006141 1.1e-41 173.7 145 63.4
BraA04t16958Z Brassica rapa HOM05D005035 ORTHO05D006141 1.1e-41 173.7 149 62.4
Phvul.004G020500 Phaseolus vulgaris HOM05D005035 ORTHO05D006141 1.1e-41 173.7 151 61.6
Sp7g01920 Schrenkiella parvula HOM05D005035 ORTHO05D006141 1.1e-41 173.7 149 62.4
A04p12970 Brassica napus HOM05D005035 ORTHO05D006141 1.5e-41 173.3 149 61.7
unitig_52.g17602 Utricularia gibba HOM05D005035 ORTHO05D006141 1.5e-41 173.3 146 65.1
Thhalv10027982m.g Eutrema salsugineum HOM05D005035 ORTHO05D006141 2.5e-41 172.6 149 63.1
THA.LOC104805419 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 2.5e-41 172.6 156 62.2
QL93p0205_0142 Quercus lobata HOM05D005035 ORTHO05D006141 5.6e-41 171.4 159 59.7
Psat1g079560 Pisum sativum HOM05D005035 ORTHO05D006141 7.3e-41 171.0 140 65.0
CDE04G0448 Ceratophyllum demersum HOM05D005035 ORTHO05D006141 1.2e-40 170.2 153 60.1
Duzib264G0892 Durio zibethinus HOM05D005035 ORTHO05D006141 1.2e-40 170.2 142 66.2
Lsat_1_v5_gn_4_180660 Lactuca sativa HOM05D005035 ORTHO05D006141 1.2e-40 170.2 161 60.2
Ciclev10013034m.g Citrus clementina HOM05D005035 ORTHO05D006141 2.1e-40 169.5 153 61.4
FAN09G0974 Fragaria x ananassa HOM05D005035 ORTHO05D006141 6.2e-40 167.9 140 64.3
FAN14G3542 Fragaria x ananassa HOM05D005035 ORTHO05D006141 6.2e-40 167.9 140 64.3
FAN02G1276 Fragaria x ananassa HOM05D005035 ORTHO05D006141 8.1e-40 167.5 140 64.3
unitig_62.g23432 Utricularia gibba HOM05D005035 ORTHO05D006141 8.1e-40 167.5 144 63.9
VMungo0464G2121 Vigna mungo HOM05D005035 ORTHO05D006141 6.8e-39 164.5 157 58.0
HPP92_003737 Vanilla planifolia HOM05D005035 ORTHO05D006141 2.0e-38 162.9 118 68.6
COL.COLO4_06152 Corchorus olitorius HOM05D005035 ORTHO05D006141 2.6e-38 162.5 127 65.4
AUR62041855 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.4e-38 161.8 188 52.7
AagrBONN_evm.TU.Sc2ySwM_340.374 Anthoceros agrestis HOM05D005035 ORTHO05D006141 9.8e-38 160.6 154 55.2
Gorai.001G259100 Gossypium raimondii HOM05D005035 ORTHO05D006141 2.2e-37 159.5 115 68.7
Sed0002098 Sechium edule HOM05D005035 ORTHO05D006141 2.2e-37 159.5 133 63.9
ClCG00G001700 Citrullus lanatus HOM05D005035 ORTHO05D006141 6.4e-37 157.9 159 54.1
ClCG09G018640 Citrullus lanatus HOM05D005035 ORTHO05D006141 6.4e-37 157.9 159 54.1
SMO147G0038 Selaginella moellendorffii HOM05D005035 ORTHO05D006141 2.4e-36 156.0 119 64.7
ATR1101G065 Amborella trichopoda HOM05D005035 ORTHO05D006141 1.2e-35 153.7 156 57.1
Mapoly0037s0068 Marchantia polymorpha HOM05D005035 ORTHO05D006141 2.1e-35 152.9 123 61.8
Pp3c3_28450 Physcomitrium patens HOM05D005035 ORTHO05D006141 7.8e-35 151.0 133 60.2
Zm00001eb373700 Zea mays HOM05D005035 ORTHO05D006141 1.0e-34 150.6 144 54.9
Pp3c4_19340 Physcomitrium patens HOM05D005035 ORTHO05D006141 2.3e-34 149.4 149 55.7
Os09g0249900 Oryza sativa ssp. japonica HOM05D005035 ORTHO05D006141 3.0e-34 149.1 123 60.2
Cre03.g193950 Chlamydomonas reinhardtii HOM05D005035 ORTHO05D006141 5.1e-34 148.3 135 57.0
MCO16G017 Micromonas commoda HOM05D005035 ORTHO05D006141 5.6e-33 144.8 127 57.5
THA.LOC104822811 Tarenaya hassleriana HOM05D005035 ORTHO05D006141 6.2e-32 141.4 112 63.4
AUR62022118 Chenopodium quinoa HOM05D005035 ORTHO05D006141 3.1e-31 139.0 111 63.1
AUR62001211 Chenopodium quinoa HOM05D005035 ORTHO05D006141 4.0e-31 138.7 111 63.1
arahy.Tifrunner.gnm1.ann1.JZED56 Arachis hypogaea HOM05D005035 ORTHO05D006141 2.0e-30 136.3 157 51.6
PRCOL_00001533 Prasinoderma coloniale HOM05D005035 ORTHO05D006141 2.0e-30 136.3 136 52.9
arahy.Tifrunner.gnm1.ann1.IKM8ZR Arachis hypogaea HOM05D005035 ORTHO05D006141 5.4e-28 128.3 124 56.5
Gorai.006G028000 Gossypium raimondii HOM05D005035 ORTHO05D006141 9.2e-28 127.5 115 62.6
CBR_g4436 Chara braunii HOM05D005035 ORTHO05D006141 4.6e-27 125.2 98 63.3
AUR62032082 Chenopodium quinoa HOM05D005035 ORTHO05D006141 1.0e-26 124.0 126 57.1
SEGI_15320 Sequoiadendron giganteum HOM05D005035 ORTHO05D006141 5.1e-26 121.7 86 72.1
CARHR102650 Cardamine hirsuta HOM05D005035 ORTHO05D006141 1.9e-25 119.8 117 59.0
QL02p078168 Quercus lobata HOM05D005035 ORTHO05D006141 2.1e-24 116.3 62 79.0
Rhsim08G0061500 Rhododendron simsii HOM05D005035 ORTHO05D006141 4.7e-24 115.2 159 47.8
Atru.chr8.2413 Acer truncatum HOM05D005035 ORTHO05D006141 1.8e-23 113.2 154 48.7
C04p46660 Brassica napus HOM05D005035 ORTHO05D006141 6.8e-23 111.3 61 77.0
Nn3g17009 Nelumbo nucifera HOM05D005035 ORTHO05D006141 1.1e-20 104.0 105 59.0
Oeu031509.1 Olea europaea HOM05D005035 ORTHO05D006141 2.7e-19 99.4 76 71.1
vmacro18227 Vaccinium macrocarpon HOM05D005035 ORTHO05D006141 4.6e-19 98.6 76 76.3
AUR62026990 Chenopodium quinoa HOM05D005035 ORTHO05D006141 5.8e-14 81.6 111 45.0
QL02p078176 Quercus lobata HOM05D005035 ORTHO05D006141 1.3e-13 80.5 67 65.7
Gohir.D09G023800 Gossypium hirsutum HOM05D005035 ORTHO05D006141 2.9e-13 79.3 68 66.2
Nn1g06334 Nelumbo nucifera HOM05D005035 ORTHO05D006141 3.9e-10 68.9 48 70.8
BcaB02g11482 Brassica carinata HOM05D005035 ORTHO05D006141 1.6e-08 63.5 66 50.0
BcaC04g21225 Brassica carinata HOM05D005035 ORTHO05D006141 3.1e-07 59.3 35 80.0
CARHR102660 Cardamine hirsuta HOM05D005035 ORTHO05D006141 9.0e-07 57.8 42 61.9
Dinv33674 Davidia involucrata HOM05D005035 ORTHO05D006141 9.0e-07 57.8 48 64.6
CSS0035672 Camellia sinensis var. sinensis HOM05D005035 ORTHO05D006141 1.5e-06 57.0 33 69.7


User provided reference genes

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