Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000786 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 0.0e+00 1695.6 842 100.0
CSS0004415 Camellia sinensis var. sinensis HOM05D003758 ORTHO05D004344 0.0e+00 1683.3 842 99.2
vmacro07358 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 0.0e+00 1130.5 888 67.6
vmacro23005 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 0.0e+00 1125.9 888 67.2
Dinv37509 Davidia involucrata HOM05D003758 ORTHO05D004344 0.0e+00 1095.1 870 66.1
Rhsim13G0004000 Rhododendron simsii HOM05D003758 ORTHO05D004344 5.0e-306 1054.3 898 64.0
vmacro02393 Vaccinium macrocarpon HOM05D003758 ORTHO05D004344 1.1e-292 1010.0 961 58.9
TAR633G1738 Trochodendron aralioides HOM05D003758 ORTHO05D004344 3.2e-289 998.4 872 61.4
GSVIVG01020570001 Vitis vinifera HOM05D003758 ORTHO05D004344 7.5e-278 960.7 855 60.9
Atru.chr5.975 Acer truncatum HOM05D003758 ORTHO05D004344 7.5e-270 934.1 870 58.0
Haze_15238 Corylus avellana HOM05D003758 ORTHO05D004344 6.4e-269 931.0 864 57.8
Cfa004172 Carpinus fangiana HOM05D003758 ORTHO05D004344 2.7e-267 925.6 865 57.6
TWI36G1552 Tripterygium wilfordii HOM05D003758 ORTHO05D004344 2.7e-267 925.6 869 56.6
Potri.002G194100 Populus trichocarpa HOM05D003758 ORTHO05D004344 5.0e-266 921.4 876 56.2
Ciclev10023744m.g Citrus clementina HOM05D003758 ORTHO05D004344 4.3e-265 918.3 871 55.9
CiPaw.13G125700 Carya illinoinensis HOM05D003758 ORTHO05D004344 8.3e-261 904.0 871 56.6
Duzib211G0665 Durio zibethinus HOM05D003758 ORTHO05D004344 1.6e-259 899.8 871 55.6
Nn6g32438 Nelumbo nucifera HOM05D003758 ORTHO05D004344 1.3e-258 896.7 870 56.1
Manes.05G014400 Manihot esculenta HOM05D003758 ORTHO05D004344 4.7e-256 888.3 872 55.0
Thecc.01G315600 Theobroma cacao HOM05D003758 ORTHO05D004344 4.7e-256 888.3 868 54.7
Manes.05G014105 Manihot esculenta HOM05D003758 ORTHO05D004344 1.1e-255 887.1 872 54.8
Manes.05G012284 Manihot esculenta HOM05D003758 ORTHO05D004344 2.0e-254 882.9 872 54.9
RcHm_v2.0_Chr3g0487391 Rosa chinensis HOM05D003758 ORTHO05D004344 5.4e-252 874.8 870 54.3
Oeu049922.1 Olea europaea HOM05D003758 ORTHO05D004344 6.0e-251 871.3 867 55.6
Gohir.A11G108400 Gossypium hirsutum HOM05D003758 ORTHO05D004344 3.9e-250 868.6 873 53.7
Gorai.007G121400 Gossypium raimondii HOM05D003758 ORTHO05D004344 3.9e-250 868.6 872 53.8
QL03p022487 Quercus lobata HOM05D003758 ORTHO05D004344 5.1e-250 868.2 855 55.4
Nitab4.5_0000321g0240 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.2e-248 863.6 865 53.1
Manes.17G075900 Manihot esculenta HOM05D003758 ORTHO05D004344 5.2e-247 858.2 872 54.0
MD17G1277400 Malus domestica HOM05D003758 ORTHO05D004344 2.4e-244 849.4 866 53.9
COL.COLO4_23214 Corchorus olitorius HOM05D003758 ORTHO05D004344 4.2e-244 848.6 880 53.3
FvH4_1g27070 Fragaria vesca HOM05D003758 ORTHO05D004344 7.1e-244 847.8 870 53.7
PGSC0003DMG400027361 Solanum tuberosum HOM05D003758 ORTHO05D004344 7.8e-243 844.3 854 52.9
MBI19_g03239_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 1.7e-242 843.2 917 52.0
Solyc11g007800.3 Solanum lycopersicum HOM05D003758 ORTHO05D004344 2.3e-242 842.8 854 52.6
Nitab4.5_0004743g0050 Nicotiana tabacum HOM05D003758 ORTHO05D004344 3.0e-242 842.4 871 51.7
Sopen11g003660 Solanum pennellii HOM05D003758 ORTHO05D004344 9.6e-241 837.4 854 52.6
Nitab4.5_0004412g0060 Nicotiana tabacum HOM05D003758 ORTHO05D004344 1.6e-240 836.6 868 52.3
FAN19G1056 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.6e-240 835.5 894 52.5
FAN28G1741 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.6e-240 835.5 872 53.4
CAN.G135.34 Capsicum annuum HOM05D003758 ORTHO05D004344 9.9e-238 827.4 849 52.9
FAN23G2430 Fragaria x ananassa HOM05D003758 ORTHO05D004344 6.0e-235 818.1 888 52.3
Peaxi162Scf00192g01619 Petunia axillaris HOM05D003758 ORTHO05D004344 7.9e-235 817.8 864 51.4
Lj4g0003540 Lotus japonicus HOM05D003758 ORTHO05D004344 3.0e-234 815.8 894 51.2
Ca_26914_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 5.1e-234 815.1 858 52.8
Ca_29676_v3 Cicer arietinum L. HOM05D003758 ORTHO05D004344 5.1e-234 815.1 858 52.8
Manes.05G007428 Manihot esculenta HOM05D003758 ORTHO05D004344 1.5e-230 803.5 859 51.5
Lj3g0021338 Lotus japonicus HOM05D003758 ORTHO05D004344 5.8e-230 801.6 894 50.6
Eucgr.F03545 Eucalyptus grandis HOM05D003758 ORTHO05D004344 7.6e-230 801.2 880 51.9
Psat7g259120 Pisum sativum HOM05D003758 ORTHO05D004344 9.3e-228 794.3 875 51.7
Glyma.15G216400 Glycine max HOM05D003758 ORTHO05D004344 1.2e-227 793.9 898 50.6
Medtr4g008840 Medicago truncatula HOM05D003758 ORTHO05D004344 1.6e-224 783.5 883 51.1
Cc02_g30290 Coffea canephora HOM05D003758 ORTHO05D004344 2.1e-224 783.1 859 50.5
DCAR_018285 Daucus carota HOM05D003758 ORTHO05D004344 2.1e-224 783.1 860 51.2
VMungo1127G2096 Vigna mungo HOM05D003758 ORTHO05D004344 1.1e-223 780.8 896 50.0
Glyma.16G071100 Glycine max HOM05D003758 ORTHO05D004344 5.8e-222 775.0 897 49.8
PSO339G3435 Papaver somniferum HOM05D003758 ORTHO05D004344 5.8e-222 775.0 872 49.2
AUR62024624 Chenopodium quinoa HOM05D003758 ORTHO05D004344 1.7e-221 773.5 861 50.6
ECA248G1618 Erigeron canadensis HOM05D003758 ORTHO05D004344 2.9e-221 772.7 855 48.9
PSO384G2631 Papaver somniferum HOM05D003758 ORTHO05D004344 4.9e-221 771.9 867 49.3
Migut.N00382 Erythranthe guttata HOM05D003758 ORTHO05D004344 4.6e-219 765.4 848 49.8
Lalb_Chr02g0146891 Lupinus albus HOM05D003758 ORTHO05D004344 7.9e-219 764.6 876 49.7
Dinv10116 Davidia involucrata HOM05D003758 ORTHO05D004344 2.3e-218 763.1 623 63.7
Phvul.011G184700 Phaseolus vulgaris HOM05D003758 ORTHO05D004344 1.5e-217 760.4 891 48.4
Sed0008176 Sechium edule HOM05D003758 ORTHO05D004344 2.1e-216 756.5 852 48.6
Aqoxy6G02867 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.8e-216 756.1 875 49.1
HanXRQChr01g0018011 Helianthus annuus HOM05D003758 ORTHO05D004344 9.0e-215 751.1 849 49.4
Thhalv10024413m.g Eutrema salsugineum HOM05D003758 ORTHO05D004344 1.0e-213 747.7 853 47.9
AT2G47300 Arabidopsis thaliana HOM05D003758 ORTHO05D004344 1.3e-213 747.3 851 48.4
Manes.05G010463 Manihot esculenta HOM05D003758 ORTHO05D004344 7.2e-212 741.5 737 54.1
Hund21053 Selenicereus undatus HOM05D003758 ORTHO05D004344 1.6e-211 740.3 865 49.5
PGR044G1293 Punica granatum HOM05D003758 ORTHO05D004344 4.6e-211 738.8 862 48.5
PGR132G0005 Punica granatum HOM05D003758 ORTHO05D004344 4.6e-211 738.8 862 48.5
Sp7g11950 Schrenkiella parvula HOM05D003758 ORTHO05D004344 4.6e-211 738.8 854 47.4
Carub.0004s3002 Capsella rubella HOM05D003758 ORTHO05D004344 8.7e-210 734.6 860 47.7
CARHR142690 Cardamine hirsuta HOM05D003758 ORTHO05D004344 7.4e-209 731.5 857 47.1
Manes.08G002202 Manihot esculenta HOM05D003758 ORTHO05D004344 1.3e-208 730.7 755 53.0
CANSAT35G0058 Cannabis sativa HOM05D003758 ORTHO05D004344 1.6e-208 730.3 869 48.7
MELO3C016319.2 Cucumis melo HOM05D003758 ORTHO05D004344 2.8e-208 729.6 848 48.7
Lsat_1_v5_gn_1_61501 Lactuca sativa HOM05D003758 ORTHO05D004344 1.4e-207 727.2 850 48.2
CiPaw.05G057600 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.3e-207 725.3 842 50.6
Aa31LG1G28620 Aethionema arabicum HOM05D003758 ORTHO05D004344 1.2e-206 724.2 859 47.5
BcaB02g08631 Brassica carinata HOM05D003758 ORTHO05D004344 5.9e-206 721.8 835 47.8
AL4G46860 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 3.2e-204 716.1 854 46.8
BcaC02g09356 Brassica carinata HOM05D003758 ORTHO05D004344 1.4e-202 710.7 843 46.7
CsaV3_4G006310 Cucumis sativus L. HOM05D003758 ORTHO05D004344 1.4e-202 710.7 847 47.3
arahy.Tifrunner.gnm1.ann1.CZ320C Arachis hypogaea HOM05D003758 ORTHO05D004344 2.3e-202 709.9 928 46.0
Psat4g209760 Pisum sativum HOM05D003758 ORTHO05D004344 5.3e-199 698.7 817 49.4
Ah.02g112390 Amaranthus hybridus HOM05D003758 ORTHO05D004344 5.9e-198 695.3 850 47.2
CiPaw.05G057800 Carya illinoinensis HOM05D003758 ORTHO05D004344 2.2e-197 693.3 737 52.5
SGA_v2.0_scaffold114G31985 Striga asiatica HOM05D003758 ORTHO05D004344 2.2e-197 693.3 869 45.7
C04p41700 Brassica napus HOM05D003758 ORTHO05D004344 3.8e-197 692.6 851 45.8
BolC4t25747H Brassica oleracea HOM05D003758 ORTHO05D004344 3.8e-197 692.6 851 45.8
arahy.Tifrunner.gnm1.ann1.8X0TS3 Arachis hypogaea HOM05D003758 ORTHO05D004344 1.9e-196 690.3 936 45.8
BraA04t16490Z Brassica rapa HOM05D003758 ORTHO05D004344 8.8e-194 681.4 854 45.2
Atru.chr9.1365 Acer truncatum HOM05D003758 ORTHO05D004344 6.3e-192 675.2 859 47.3
A04p08020 Brassica napus HOM05D003758 ORTHO05D004344 8.2e-192 674.9 852 44.8
Sed0003653 Sechium edule HOM05D003758 ORTHO05D004344 5.3e-191 672.2 788 46.8
ATR0693G226 Amborella trichopoda HOM05D003758 ORTHO05D004344 6.1e-187 658.7 919 43.7
SalBow3G2832 Salvia bowleyana HOM05D003758 ORTHO05D004344 2.4e-183 646.7 804 46.4
TAR629G2570 Trochodendron aralioides HOM05D003758 ORTHO05D004344 5.5e-180 635.6 623 56.3
AUR62011780 Chenopodium quinoa HOM05D003758 ORTHO05D004344 4.7e-179 632.5 726 48.6
Gohir.D11G112900 Gossypium hirsutum HOM05D003758 ORTHO05D004344 2.3e-178 630.2 672 52.4
Prupe.3G010600 Prunus persica HOM05D003758 ORTHO05D004344 1.4e-175 620.9 623 55.5
HPP92_010605 Vanilla planifolia HOM05D003758 ORTHO05D004344 4.5e-174 615.9 869 42.9
unitig_8.g3963 Utricularia gibba HOM05D003758 ORTHO05D004344 1.6e-171 607.4 846 45.2
GSVIVG01038383001 Vitis vinifera HOM05D003758 ORTHO05D004344 6.1e-163 578.9 653 50.4
THA.LOC104807090 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 1.0e-162 578.2 683 45.8
Haze_16412 Corylus avellana HOM05D003758 ORTHO05D004344 1.8e-159 567.4 764 45.9
MSTRG.19341 Avicennia marina HOM05D003758 ORTHO05D004344 4.3e-156 556.2 683 46.1
Lj2A672T52 Lonicera japonica HOM05D003758 ORTHO05D004344 7.0e-151 538.9 557 54.9
Eucgr.D02543 Eucalyptus grandis HOM05D003758 ORTHO05D004344 2.7e-150 537.0 867 41.4
Sc05g0000350 Simmondsia chinensis HOM05D003758 ORTHO05D004344 5.0e-149 532.7 625 48.5
Actinidia03664 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.3e-146 523.9 641 50.4
FAN26G0338 Fragaria x ananassa HOM05D003758 ORTHO05D004344 3.0e-141 506.9 568 50.7
Cpa.g.sc18.69 Carica papaya HOM05D003758 ORTHO05D004344 3.5e-126 456.8 500 51.0
Cc00_g01260 Coffea canephora HOM05D003758 ORTHO05D004344 5.4e-119 433.0 643 41.1
CiPaw.05G057200 Carya illinoinensis HOM05D003758 ORTHO05D004344 1.5e-108 398.3 543 46.6
Cpa.g.sc18.67 Carica papaya HOM05D003758 ORTHO05D004344 2.0e-105 387.9 375 55.5
arahy.Tifrunner.gnm1.ann1.C8HKPK Arachis hypogaea HOM05D003758 ORTHO05D004344 1.0e-104 385.6 567 43.2
CDE11G0119 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 9.0e-98 362.5 490 44.5
Zm00001eb331260 Zea mays HOM05D003758 ORTHO05D004344 1.3e-96 358.6 551 39.6
AL302U10030 Arabidopsis lyrata HOM05D003758 ORTHO05D004344 6.1e-94 349.7 378 50.8
AagrBONN_evm.TU.Sc2ySwM_344.4368 Anthoceros agrestis HOM05D003758 ORTHO05D004344 5.0e-88 330.1 959 29.3
Pp3c2_6540 Physcomitrium patens HOM05D003758 ORTHO05D004344 3.3e-84 317.4 1052 27.8
Cc00_g26030 Coffea canephora HOM05D003758 ORTHO05D004344 1.9e-79 301.6 476 40.5
Os11g0677500 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 1.2e-78 298.9 520 37.1
MD17G1275700 Malus domestica HOM05D003758 ORTHO05D004344 2.3e-77 294.7 279 54.8
TAR629G0826 Trochodendron aralioides HOM05D003758 ORTHO05D004344 2.3e-77 294.7 222 69.8
Mapoly0039s0104 Marchantia polymorpha HOM05D003758 ORTHO05D004344 5.2e-77 293.5 669 30.2
Dinv10117 Davidia involucrata HOM05D003758 ORTHO05D004344 1.5e-71 275.4 193 72.0
CDE11G1215 Ceratophyllum demersum HOM05D003758 ORTHO05D004344 5.5e-63 246.9 305 47.9
Sabra02G0162300 Salix brachista HOM05D003758 ORTHO05D004344 5.7e-60 236.9 185 64.9
Actinidia03665 Actinidia chinensis HOM05D003758 ORTHO05D004344 3.7e-59 234.2 171 71.3
MSTRG.19342 Avicennia marina HOM05D003758 ORTHO05D004344 5.0e-56 223.8 173 63.6
TPR.G844 Trifolium pratense HOM05D003758 ORTHO05D004344 2.5e-55 221.5 332 43.4
RcHm_v2.0_Chr3g0487761 Rosa chinensis HOM05D003758 ORTHO05D004344 2.7e-49 201.4 181 58.0
CiPaw.05G057300 Carya illinoinensis HOM05D003758 ORTHO05D004344 5.9e-49 200.3 225 50.7
Glyma.04G000100 Glycine max HOM05D003758 ORTHO05D004344 1.2e-46 192.6 164 61.6
EL10As5g23552 Beta vulgaris HOM05D003758 ORTHO05D004344 1.4e-45 189.1 194 53.6
MD17G1275500 Malus domestica HOM05D003758 ORTHO05D004344 6.8e-45 186.8 182 56.0
Glyma.09G000100 Glycine max HOM05D003758 ORTHO05D004344 2.2e-43 181.8 164 58.5
TPR.G35143 Trifolium pratense HOM05D003758 ORTHO05D004344 4.9e-43 180.6 253 44.7
MD17G1273000 Malus domestica HOM05D003758 ORTHO05D004344 5.4e-42 177.2 459 31.2
Glyma.09G286500 Glycine max HOM05D003758 ORTHO05D004344 1.7e-40 172.2 153 60.1
Lj2A672T51 Lonicera japonica HOM05D003758 ORTHO05D004344 7.3e-39 166.8 123 69.1
Glyma.05G249100 Glycine max HOM05D003758 ORTHO05D004344 1.6e-38 165.6 147 60.5
THA.LOC104808447 Tarenaya hassleriana HOM05D003758 ORTHO05D004344 4.7e-38 164.1 157 59.2
HanXRQChr06g0163771 Helianthus annuus HOM05D003758 ORTHO05D004344 1.1e-37 162.9 272 39.3
Cc00_g26020 Coffea canephora HOM05D003758 ORTHO05D004344 1.5e-36 159.1 112 67.0
Glyma.16G000100 Glycine max HOM05D003758 ORTHO05D004344 3.4e-36 157.9 147 57.1
TPR.G29732 Trifolium pratense HOM05D003758 ORTHO05D004344 1.7e-35 155.6 115 65.2
TPR.G18538 Trifolium pratense HOM05D003758 ORTHO05D004344 3.7e-35 154.5 115 64.3
TPR.G23107 Trifolium pratense HOM05D003758 ORTHO05D004344 1.1e-34 152.9 200 44.0
MD17G1275600 Malus domestica HOM05D003758 ORTHO05D004344 9.2e-34 149.8 121 57.9
MBI16_g26326_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 9.5e-31 139.8 95 75.8
arahy.Tifrunner.gnm1.ann1.NW0172 Arachis hypogaea HOM05D003758 ORTHO05D008556 1.6e-30 139.0 148 51.4
MBI18_g24870_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.1e-30 138.7 99 72.7
CBR_g22385 Chara braunii HOM05D006522 ORTHO05D008183 8.9e-29 133.3 722 22.9
MBI19_g28115_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 2.6e-28 131.7 97 71.1
GSVIVG01038399001 Vitis vinifera HOM05D003758 ORTHO05D004344 2.7e-25 121.7 83 67.5
SalBow1G0003 Salvia bowleyana HOM05D003758 ORTHO05D004344 3.0e-24 118.2 266 30.8
CSS0008641 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.2e-22 112.8 72 83.3
CBR_g41368 Chara braunii HOM05D003758 ORTHO05D004344 2.1e-22 112.1 276 27.9
CBR_g17052 Chara braunii HOM05D003758 ORTHO05D004344 1.1e-21 109.8 315 27.6
HanXRQChr06g0163761 Helianthus annuus HOM05D003758 ORTHO05D004344 6.8e-21 107.1 80 65.0
Glyma.17G000200 Glycine max HOM05D003758 ORTHO05D004344 1.3e-19 102.8 118 50.8
ECA236G0722 Erigeron canadensis HOM05D003758 ORTHO05D004344 1.1e-18 99.8 196 35.2
Glyma.17G000100 Glycine max HOM05D003758 ORTHO05D004344 1.9e-18 99.0 146 39.7
MD17G1275800 Malus domestica HOM05D003758 ORTHO05D004344 7.8e-17 93.6 72 69.4
Aqoxy3G01506 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 3.6e-14 84.7 80 57.5
Cc02_g29260 Coffea canephora HOM05D003758 ORTHO05D004344 1.1e-13 83.2 62 74.2
Cre04.g214690 Chlamydomonas reinhardtii HOM05D003758 ORTHO05D004344 6.9e-13 80.5 153 35.3
Actinidia00830 Actinidia chinensis HOM05D003758 ORTHO05D004344 2.0e-12 79.0 70 58.6
Aqoxy3G01505 Aquilegia oxysepala HOM05D003758 ORTHO05D004344 2.0e-12 79.0 49 73.5
MBI02_g41251_MAGBIO Magnolia biondii HOM05D003758 ORTHO05D004344 3.8e-11 74.7 64 65.6
TAR623G1284 Trochodendron aralioides HOM05D003758 ORTHO05D004344 1.9e-10 72.4 58 60.3
CAN.G231.17 Capsicum annuum HOM05D003758 ORTHO05D004344 1.6e-09 69.3 90 48.9
Os11g0677425 Oryza sativa ssp. japonica HOM05D003758 ORTHO05D004344 2.7e-09 68.6 128 35.9
SEGI_18930 Sequoiadendron giganteum HOM05D003758 ORTHO05D004344 3.3e-07 61.6 237 24.9
MBI15_g10869_MAGBIO Magnolia biondii HOM05D021441 ORTHO05D004344 9.6e-07 60.1 60 51.7


User provided reference genes

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