Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-42 174.9 88 100.0
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.0e-40 168.7 88 96.6
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.2e-38 161.4 90 92.2
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.2e-38 161.4 90 92.2
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.6e-37 157.5 90 91.1
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.0e-36 156.4 91 91.2
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.7e-34 147.9 90 86.7
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-32 142.9 100 78.0
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 3.1e-25 118.2 113 57.5
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 7.6e-24 113.6 114 54.4
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.9e-23 111.7 96 66.7
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 4.9e-23 110.9 114 54.4
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 2.5e-22 108.6 114 53.5
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 7.9e-21 103.6 113 51.3
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.0e-20 103.2 112 48.2
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.8e-20 102.4 101 57.4
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 2.3e-20 102.1 105 51.4
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 3.3e-19 98.2 98 55.1
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 7.4e-19 97.1 113 46.0
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 9.7e-19 96.7 102 53.9
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 3.7e-18 94.7 105 50.5
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 6.3e-18 94.0 114 47.4
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 6.3e-18 94.0 98 52.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 8.2e-18 93.6 105 50.5
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.1e-17 93.2 106 49.1
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.4e-17 92.0 99 50.5
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.1e-17 91.7 105 48.6
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 4.1e-17 91.3 113 46.0
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 5.3e-17 90.9 111 43.2
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.9e-17 90.5 105 48.6
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.5e-16 89.4 110 44.5
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 3.4e-16 88.2 100 49.0
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 3.4e-16 88.2 98 50.0
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.0e-15 86.7 108 45.4
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.3e-15 86.3 106 48.1
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.2e-15 85.5 100 46.0
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 2.2e-15 85.5 100 49.0
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.2e-15 85.5 112 41.1
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 2.9e-15 85.1 103 45.6
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 3.8e-15 84.7 101 46.5
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 3.8e-15 84.7 101 47.5
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 5.0e-15 84.3 96 49.0
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.4e-14 82.8 105 43.8
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 1.4e-14 82.8 103 43.7
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.9e-14 82.4 110 44.5
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 2.5e-14 82.0 108 43.5
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 4.2e-14 81.3 99 46.5
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 5.5e-14 80.9 105 42.9
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 7.2e-14 80.5 110 42.7
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 9.4e-14 80.1 97 46.4
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 9.4e-14 80.1 95 48.4
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 9.4e-14 80.1 97 44.3
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.2e-13 79.7 98 46.9
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 1.6e-13 79.3 100 42.0
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 2.1e-13 79.0 100 44.0
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.1e-13 79.0 100 43.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 2.7e-13 78.6 106 44.3
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.6e-13 78.2 95 46.3
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 4.6e-13 77.8 95 45.3
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.1e-13 77.4 109 41.3
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 7.9e-13 77.0 97 44.3
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.4e-12 76.3 96 43.8
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.8e-12 75.9 99 44.4
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.8e-12 75.9 98 42.9
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 3.9e-12 74.7 94 44.7
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 3.9e-12 74.7 100 43.0
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 6.7e-12 73.9 106 41.5
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.5e-11 72.8 106 38.7
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.5e-11 72.8 92 43.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.0e-11 72.4 95 45.3
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 2.0e-11 72.4 107 37.4
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 3.3e-11 71.6 96 42.7
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.3e-11 71.2 106 38.7
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.3e-11 71.2 96 42.7
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 4.3e-11 71.2 95 44.2
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 4.3e-11 71.2 95 44.2
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 5.7e-11 70.9 98 43.9
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 5.7e-11 70.9 109 40.4
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 7.4e-11 70.5 95 44.2
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 9.7e-11 70.1 96 39.6
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.3e-10 69.7 110 40.0
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.3e-10 69.7 96 43.8
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.3e-10 69.7 59 59.3
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.2e-10 68.9 100 41.0
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 3.7e-10 68.2 107 36.4
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.7e-10 68.2 100 38.0
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 3.7e-10 68.2 90 45.6
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 6.3e-10 67.4 96 37.5
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 8.2e-10 67.0 85 42.4
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.1e-09 66.6 95 43.2
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.1e-09 66.6 85 42.4
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.1e-09 66.6 96 38.5
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.4e-09 66.2 104 42.3
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.8e-09 65.9 98 36.7
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.8e-09 65.9 101 37.6
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.8e-09 65.9 100 35.0
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 2.4e-09 65.5 102 38.2
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 2.4e-09 65.5 95 36.8
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 3.1e-09 65.1 102 36.3
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 3.1e-09 65.1 111 36.0
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 9.1e-09 63.5 100 37.0
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.1e-09 63.5 107 39.3
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.1e-09 63.5 105 40.0
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 9.1e-09 63.5 105 38.1
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 1.2e-08 63.2 99 39.4
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 1.2e-08 63.2 66 53.0
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 1.5e-08 62.8 100 36.0
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.5e-08 62.8 100 36.0
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.6e-08 62.0 99 39.4
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.5e-08 61.2 104 40.4
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.5e-08 61.2 100 40.0
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 5.9e-08 60.8 97 36.1
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 1.3e-07 59.7 102 33.3
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 2.9e-07 58.5 97 34.0
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 5.0e-07 57.8 93 38.7
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 6.5e-07 57.4 101 38.6
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 6.5e-07 57.4 109 33.9
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-06 56.6 97 34.0
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.1e-06 56.6 97 34.0
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 1.1e-06 56.6 97 34.0
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.4e-06 56.2 103 36.9
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 1.4e-06 56.2 33 75.8
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.9e-06 55.8 103 39.8
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 2.5e-06 55.5 100 34.0
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 5.5e-06 54.3 85 34.1
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 9.4e-06 53.5 68 44.1


User provided reference genes

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