Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000585 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D113077 5.0e-73 277.7 143 100.0
CSS0016682 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D112330 4.5e-50 201.4 159 72.3
CSS0017150 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D110854 5.9e-50 201.1 160 71.9
CSS0004238 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D113145 2.6e-45 185.7 158 70.9
CSS0026406 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D111607 2.6e-45 185.7 158 70.9
CSS0048662 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D109848 7.5e-45 184.1 158 70.9
CSS0002344 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D109456 9.8e-45 183.7 158 70.3
CSS0003452 Camellia sinensis var. sinensis HOM05D016198 ORTHO05D110105 3.1e-43 178.7 143 72.7
Sabra12G0057700 Salix brachista HOM05D003618 ORTHO05D004302 7.3e-08 61.2 68 52.9
Migut.I00013 Erythranthe guttata HOM05D003618 ORTHO05D004302 9.5e-08 60.8 80 48.8
QL10p011706 Quercus lobata HOM05D003618 ORTHO05D004302 9.5e-08 60.8 65 55.4
Sc12g0005340 Simmondsia chinensis HOM05D003618 ORTHO05D004302 9.5e-08 60.8 80 48.8
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.6e-07 60.1 68 54.4
Sed0011107 Sechium edule HOM05D003618 ORTHO05D004302 1.6e-07 60.1 66 54.5
PGSC0003DMG400024503 Solanum tuberosum HOM05D003618 ORTHO05D004302 1.6e-07 60.1 66 54.5
HPP92_004862 Vanilla planifolia HOM05D003618 ORTHO05D004302 1.6e-07 60.1 65 55.4
FAN04G2056 Fragaria x ananassa HOM05D003618 ORTHO05D004302 2.1e-07 59.7 34 85.3
Zm00001eb334370 Zea mays HOM05D003618 ORTHO05D004302 2.1e-07 59.7 66 51.5
Atru.chr9.2476 Acer truncatum HOM05D003618 ORTHO05D004302 2.8e-07 59.3 51 64.7
CSS0011521 Camellia sinensis var. sinensis HOM05D014015 ORTHO05D111502 2.8e-07 59.3 48 58.3
CSS0025906 Camellia sinensis var. sinensis HOM05D014015 ORTHO05D109620 2.8e-07 59.3 48 56.2
ClCG06G017010 Citrullus lanatus HOM05D003618 ORTHO05D004302 2.8e-07 59.3 66 54.5
Cc04_g14010 Coffea canephora HOM05D003618 ORTHO05D004302 2.8e-07 59.3 65 53.8
Dinv02897 Davidia involucrata HOM05D003618 ORTHO05D004302 2.8e-07 59.3 66 54.5
Nn4g22770 Nelumbo nucifera HOM05D003618 ORTHO05D004302 2.8e-07 59.3 67 53.7
GSVIVG01007752001 Vitis vinifera HOM05D003618 ORTHO05D004302 2.8e-07 59.3 65 55.4
Zm00001eb126690 Zea mays HOM05D003618 ORTHO05D004302 2.8e-07 59.3 66 53.0
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.6e-07 58.9 38 81.6
Cfa019131 Carpinus fangiana HOM05D003618 ORTHO05D004302 3.6e-07 58.9 65 53.8
Haze_07469 Corylus avellana HOM05D003618 ORTHO05D004302 3.6e-07 58.9 65 53.8
DCAR_026133 Daucus carota HOM05D003618 ORTHO05D004302 3.6e-07 58.9 65 53.8
FAN18G3061 Fragaria x ananassa HOM05D003618 ORTHO05D004302 3.6e-07 58.9 38 76.3
Glyma.05G037500 Glycine max HOM05D003618 ORTHO05D004302 3.6e-07 58.9 67 52.2
Manes.14G065900 Manihot esculenta HOM05D003618 ORTHO05D004302 3.6e-07 58.9 65 53.8
Oeu035988.1 Olea europaea HOM05D003618 ORTHO05D004302 3.6e-07 58.9 67 52.2
Peaxi162Scf00017g02915 Petunia axillaris HOM05D003618 ORTHO05D004302 3.6e-07 58.9 66 53.0
SalBow5G0347 Salvia bowleyana HOM05D003618 ORTHO05D004302 3.6e-07 58.9 66 54.5
SalBow5G5681 Salvia bowleyana HOM05D003618 ORTHO05D004302 3.6e-07 58.9 66 54.5
Solyc03g114340.3 Solanum lycopersicum HOM05D003618 ORTHO05D004302 3.6e-07 58.9 66 53.0
Sopen03g033440 Solanum pennellii HOM05D003618 ORTHO05D004302 3.6e-07 58.9 66 53.0
TWI14G0558 Tripterygium wilfordii HOM05D003618 ORTHO05D004302 3.6e-07 58.9 65 53.8
AL8G39750 Arabidopsis lyrata HOM05D003618 ORTHO05D004302 4.7e-07 58.5 38 78.9
AT5G62790 Arabidopsis thaliana HOM05D003618 ORTHO05D004302 4.7e-07 58.5 38 78.9
BcaB02g09693 Brassica carinata HOM05D003618 ORTHO05D004302 4.7e-07 58.5 38 78.9
BcaC04g23393 Brassica carinata HOM05D003618 ORTHO05D004302 4.7e-07 58.5 38 78.9
BcaNung01381 Brassica carinata HOM05D003618 ORTHO05D004302 4.7e-07 58.5 38 78.9
A09p07850 Brassica napus HOM05D003618 ORTHO05D004302 4.7e-07 58.5 38 78.9
C09p08850 Brassica napus HOM05D003618 ORTHO05D004302 4.7e-07 58.5 38 78.9
BolC9t53797H Brassica oleracea HOM05D003618 ORTHO05D004302 4.7e-07 58.5 38 78.9
CARHR276570 Cardamine hirsuta HOM05D003618 ORTHO05D004302 4.7e-07 58.5 38 78.9
CiPaw.11G026400 Carya illinoinensis HOM05D003618 ORTHO05D004302 4.7e-07 58.5 65 53.8
MSTRG.23128 Avicennia marina HOM05D003618 ORTHO05D004302 6.2e-07 58.2 65 53.8
CSS0045852 Camellia sinensis var. sinensis HOM05D003618 ORTHO05D004302 6.2e-07 58.2 36 83.3
FAN08G0480 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.2e-07 58.2 34 82.4
FAN13G0153 Fragaria x ananassa HOM05D003618 ORTHO05D004302 6.2e-07 58.2 34 82.4
Lj4g0012807 Lotus japonicus HOM05D003618 ORTHO05D004302 6.2e-07 58.2 38 76.3
Lalb_Chr07g0182731 Lupinus albus HOM05D003618 ORTHO05D004302 6.2e-07 58.2 51 60.8
Manes.06G104700 Manihot esculenta HOM05D003618 ORTHO05D004302 6.2e-07 58.2 36 83.3
PSO170G5081 Papaver somniferum HOM05D003618 ORTHO05D004302 6.2e-07 58.2 66 53.0
Rhsim08G0171900 Rhododendron simsii HOM05D003618 ORTHO05D004302 6.2e-07 58.2 36 83.3
THA.LOC104818235 Tarenaya hassleriana HOM05D003618 ORTHO05D004302 6.2e-07 58.2 38 76.3
ATR0730G147 Amborella trichopoda HOM05D003618 ORTHO05D004302 8.1e-07 57.8 36 80.6
BraA09t36436Z Brassica rapa HOM05D003618 ORTHO05D004302 8.1e-07 57.8 36 80.6
CANSAT80G1364 Cannabis sativa HOM05D003618 ORTHO05D004302 8.1e-07 57.8 60 55.0
MBI10_g14554_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 8.1e-07 57.8 66 51.5
MBI16_g32207_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 8.1e-07 57.8 36 80.6
Nitab4.5_0007719g0010 Nicotiana tabacum HOM05D003618 ORTHO05D004302 8.1e-07 57.8 36 80.6
Nitab4.5_0009783g0020 Nicotiana tabacum HOM05D003618 ORTHO05D004302 8.1e-07 57.8 36 80.6
Os01g0106900 Oryza sativa ssp. japonica HOM05D003618 ORTHO05D004302 8.1e-07 57.8 36 80.6
Potri.012G080900 Populus trichocarpa HOM05D003618 ORTHO05D004302 8.1e-07 57.8 65 52.3
PGR083G1520 Punica granatum HOM05D003618 ORTHO05D004302 8.1e-07 57.8 36 80.6
TAR629G0089 Trochodendron aralioides HOM05D003618 ORTHO05D004302 8.1e-07 57.8 36 80.6
vmacro19385 Vaccinium macrocarpon HOM05D003618 ORTHO05D004302 8.1e-07 57.8 36 80.6
arahy.Tifrunner.gnm1.ann1.2KV8GB Arachis hypogaea HOM05D003618 ORTHO05D004302 1.1e-06 57.4 38 76.3
arahy.Tifrunner.gnm1.ann1.9FL7A6 Arachis hypogaea HOM05D003618 ORTHO05D004302 1.1e-06 57.4 38 76.3
MSTRG.11450 Avicennia marina HOM05D003618 ORTHO05D004302 1.1e-06 57.4 66 51.5
CSS0010241 Camellia sinensis var. sinensis HOM05D014015 ORTHO05D112250 1.1e-06 57.4 48 56.2
CANSAT80G1130 Cannabis sativa HOM05D003618 ORTHO05D004302 1.1e-06 57.4 38 78.9
Carub.0008s2351 Capsella rubella HOM05D003618 ORTHO05D004302 1.1e-06 57.4 38 76.3
Ca_21917_v3 Cicer arietinum L. HOM05D003618 ORTHO05D004302 1.1e-06 57.4 67 50.7
Duzib205G1198 Durio zibethinus HOM05D003618 ORTHO05D004302 1.1e-06 57.4 65 52.3
Eucgr.B00316 Eucalyptus grandis HOM05D003618 ORTHO05D004302 1.1e-06 57.4 38 76.3
Glyma.17G089600 Glycine max HOM05D003618 ORTHO05D004302 1.1e-06 57.4 38 76.3
Lj5A124T67 Lonicera japonica HOM05D003618 ORTHO05D004302 1.1e-06 57.4 65 52.3
Lalb_Chr12g0201571 Lupinus albus HOM05D003618 ORTHO05D004302 1.1e-06 57.4 67 49.3
MBI10_g41914_MAGBIO Magnolia biondii HOM05D003618 ORTHO05D004302 1.1e-06 57.4 66 50.0
MD06G1174000 Malus domestica HOM05D003618 ORTHO05D004302 1.1e-06 57.4 38 78.9
MD14G1180500 Malus domestica HOM05D003618 ORTHO05D004302 1.1e-06 57.4 38 78.9
Mapoly0034s0078 Marchantia polymorpha HOM05D003618 ORTHO05D004302 1.1e-06 57.4 36 77.8
Oeu040829.1 Olea europaea HOM05D003618 ORTHO05D004302 1.1e-06 57.4 68 50.0
Potri.015G076200 Populus trichocarpa HOM05D003618 ORTHO05D004302 1.1e-06 57.4 67 52.2
Prupe.5G174000 Prunus persica HOM05D003618 ORTHO05D004302 1.1e-06 57.4 38 78.9
Sabra15G0101400 Salix brachista HOM05D003618 ORTHO05D004302 1.1e-06 57.4 67 52.2
Hund02742 Selenicereus undatus HOM05D003618 ORTHO05D004302 1.1e-06 57.4 51 62.7
Thhalv10004122m.g Eutrema salsugineum HOM05D003618 ORTHO05D004302 1.4e-06 57.0 38 76.3
FvH4_5g05300 Fragaria vesca HOM05D003618 ORTHO05D004302 1.4e-06 57.0 38 76.3
FAN18G3775 Fragaria x ananassa HOM05D003618 ORTHO05D004302 1.4e-06 57.0 38 76.3
HanXRQChr05g0153451 Helianthus annuus HOM05D003618 ORTHO05D004302 1.4e-06 57.0 65 50.8
Lalb_Chr13g0297811 Lupinus albus HOM05D003618 ORTHO05D004302 1.4e-06 57.0 51 58.8
Psat4g058000 Pisum sativum HOM05D003618 ORTHO05D004302 1.4e-06 57.0 67 52.2
Sp2g25950 Schrenkiella parvula HOM05D003618 ORTHO05D004302 1.4e-06 57.0 38 76.3
TAR622G0131 Trochodendron aralioides HOM05D003618 ORTHO05D004302 1.4e-06 57.0 36 80.6
unitig_0.g1445 Utricularia gibba HOM05D003618 ORTHO05D004302 1.4e-06 57.0 65 50.8
Actinidia33067 Actinidia chinensis HOM05D003618 ORTHO05D004302 1.8e-06 56.6 36 80.6
BcaC01g02522 Brassica carinata HOM05D003618 ORTHO05D004302 1.8e-06 56.6 38 76.3
A06p29560 Brassica napus HOM05D003618 ORTHO05D004302 1.8e-06 56.6 38 76.3
C03p63940 Brassica napus HOM05D003618 ORTHO05D004302 1.8e-06 56.6 38 76.3
BolC3t18648H Brassica oleracea HOM05D003618 ORTHO05D004302 1.8e-06 56.6 38 76.3
CSS0015481 Camellia sinensis var. sinensis HOM05D014015 ORTHO05D110839 1.8e-06 56.6 48 56.2
CSS0024876 Camellia sinensis var. sinensis HOM05D014015 ORTHO05D111749 1.8e-06 56.6 48 56.2
CSS0031739 Camellia sinensis var. sinensis HOM05D014015 ORTHO05D109804 1.8e-06 56.6 48 56.2
CSS0045768 Camellia sinensis var. sinensis HOM05D014015 ORTHO05D112153 1.8e-06 56.6 48 56.2
COL.COLO4_30036 Corchorus olitorius HOM05D003618 ORTHO05D004302 1.8e-06 56.6 36 77.8
Medtr4g106870 Medicago truncatula HOM05D003618 ORTHO05D004302 1.8e-06 56.6 38 73.7
PSO455G0039 Papaver somniferum HOM05D003618 ORTHO05D004302 1.8e-06 56.6 65 52.3
SGA_v2.0_scaffold25G10843 Striga asiatica HOM05D003618 ORTHO05D004302 1.8e-06 56.6 36 77.8
SGA_v2.0_scaffold90G27940 Striga asiatica HOM05D003618 ORTHO05D004302 1.8e-06 56.6 36 77.8
Gohir.A09G171800 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.4e-06 56.2 36 77.8
Gohir.D09G167500 Gossypium hirsutum HOM05D003618 ORTHO05D004302 2.4e-06 56.2 36 77.8
Gorai.006G189200 Gossypium raimondii HOM05D003618 ORTHO05D004302 2.4e-06 56.2 36 77.8
Lsat_1_v5_gn_5_14440 Lactuca sativa HOM05D003618 ORTHO05D004302 2.4e-06 56.2 36 77.8
Phvul.003G200300 Phaseolus vulgaris HOM05D003618 ORTHO05D004302 2.4e-06 56.2 36 75.0
Sed0001158 Sechium edule HOM05D003618 ORTHO05D004302 2.4e-06 56.2 65 50.8
VMungo1215G2328 Vigna mungo HOM05D003618 ORTHO05D004302 2.4e-06 56.2 36 75.0
BraA06t25902Z Brassica rapa HOM05D003618 ORTHO05D004302 3.1e-06 55.8 37 75.7
Lj9A449G48 Lonicera japonica HOM05D003618 ORTHO05D004302 3.1e-06 55.8 65 50.8
SMO348G0015 Selaginella moellendorffii HOM05D003618 ORTHO05D004302 3.1e-06 55.8 50 62.0
Thecc.03G012400 Theobroma cacao HOM05D003618 ORTHO05D004302 3.1e-06 55.8 65 50.8
AagrBONN_evm.TU.Sc2ySwM_228.1199 Anthoceros agrestis HOM05D003618 ORTHO05D004302 4.0e-06 55.5 38 73.7
CSS0047170 Camellia sinensis var. sinensis HOM05D014015 ORTHO05D111381 4.0e-06 55.5 48 56.2
Dinv20656 Davidia involucrata HOM05D003618 ORTHO05D004302 4.0e-06 55.5 65 50.8
RcHm_v2.0_Chr7g0193571 Rosa chinensis HOM05D003618 ORTHO05D004302 4.0e-06 55.5 38 73.7
TPR.G37486 Trifolium pratense HOM05D003618 ORTHO05D004302 5.2e-06 55.1 38 71.1
Aqoxy3G02948 Aquilegia oxysepala HOM05D003618 ORTHO05D004302 6.8e-06 54.7 57 50.9
Ciclev10019836m.g Citrus clementina HOM05D003618 ORTHO05D004302 6.8e-06 54.7 68 52.9
Duzib068G0560 Durio zibethinus HOM05D003618 ORTHO05D004302 6.8e-06 54.7 31 83.9
Gohir.D11G000832 Gossypium hirsutum HOM05D003618 ORTHO05D004302 6.8e-06 54.7 36 80.6
HanXRQChr09g0272201 Helianthus annuus HOM05D003618 ORTHO05D004302 6.8e-06 54.7 36 72.2
CSS0009182 Camellia sinensis var. sinensis HOM05D014015 ORTHO05D110871 8.9e-06 54.3 48 54.2
Lsat_1_v5_gn_4_75261 Lactuca sativa HOM05D003618 ORTHO05D004302 8.9e-06 54.3 36 72.2


User provided reference genes

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