Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000499 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 2.8e-88 328.6 166 100.0
Ciclev10000728m.g Citrus clementina HOM05D003767 ORTHO05D004507 2.8e-35 152.5 80 91.2
Gohir.A11G224810 Gossypium hirsutum HOM05D003767 ORTHO05D004507 8.1e-35 151.0 80 87.5
Atru.chr2.496 Acer truncatum HOM05D003767 ORTHO05D004507 1.8e-34 149.8 80 88.8
Gohir.D11G232600 Gossypium hirsutum HOM05D003767 ORTHO05D004507 1.8e-34 149.8 80 86.2
Gorai.003G066300 Gossypium raimondii HOM05D003767 ORTHO05D004507 1.8e-34 149.8 80 86.2
Manes.09G162900 Manihot esculenta HOM05D003767 ORTHO05D004507 3.1e-34 149.1 80 86.2
Prupe.6G331000 Prunus persica HOM05D003767 ORTHO05D004507 3.1e-34 149.1 101 74.3
RhsimUnG0080300 Rhododendron simsii HOM05D003767 ORTHO05D004507 4.0e-34 148.7 80 91.2
Cfa006539 Carpinus fangiana HOM05D003767 ORTHO05D004507 5.3e-34 148.3 80 88.8
Duzib147G0043 Durio zibethinus HOM05D003767 ORTHO05D004507 5.3e-34 148.3 80 86.2
Hma1.2p1_0666F.1_g199390 Hydrangea macrophylla HOM05D003767 ORTHO05D004507 5.3e-34 148.3 80 88.8
Rhsim07G0179200 Rhododendron simsii HOM05D003767 ORTHO05D004507 5.3e-34 148.3 80 90.0
Sabra05G0038000 Salix brachista HOM05D003767 ORTHO05D004507 5.3e-34 148.3 80 87.5
Thecc.02G212900 Theobroma cacao HOM05D003767 ORTHO05D004507 6.9e-34 147.9 80 87.5
GSVIVG01022056001 Vitis vinifera HOM05D003767 ORTHO05D004507 6.9e-34 147.9 80 87.5
Potri.005G038100 Populus trichocarpa HOM05D003767 ORTHO05D004507 9.0e-34 147.5 80 86.2
vmacro05036 Vaccinium macrocarpon HOM05D003767 ORTHO05D004507 9.0e-34 147.5 80 90.0
Aqoxy5G00559 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 1.2e-33 147.1 80 87.5
CiPaw.08G167300 Carya illinoinensis HOM05D003767 ORTHO05D004507 1.5e-33 146.7 80 87.5
Nn1g08367 Nelumbo nucifera HOM05D003767 ORTHO05D004507 1.5e-33 146.7 80 87.5
arahy.Tifrunner.gnm1.ann1.1T3PYK Arachis hypogaea HOM05D003767 ORTHO05D004507 2.0e-33 146.4 80 85.0
arahy.Tifrunner.gnm1.ann1.RYM43V Arachis hypogaea HOM05D003767 ORTHO05D004507 2.0e-33 146.4 80 85.0
Potri.013G026800 Populus trichocarpa HOM05D003767 ORTHO05D004507 2.0e-33 146.4 80 85.0
Cpa.g.sc48.5 Carica papaya HOM05D003767 ORTHO05D004507 3.4e-33 145.6 80 85.0
FAN14G0860 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.4e-33 145.6 100 68.0
FAN14G3644 Fragaria x ananassa HOM05D003767 ORTHO05D004507 3.4e-33 145.6 100 68.0
TAR365G0614 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.5e-33 145.2 80 86.2
Ah.06g190170 Amaranthus hybridus HOM05D003767 ORTHO05D004507 5.8e-33 144.8 80 85.0
FvH4_6g05260 Fragaria vesca HOM05D003767 ORTHO05D004507 5.8e-33 144.8 80 82.5
PSO210G1178 Papaver somniferum HOM05D003767 ORTHO05D004507 5.8e-33 144.8 81 82.7
PSO832G1867 Papaver somniferum HOM05D003767 ORTHO05D004507 5.8e-33 144.8 81 82.7
Lalb_Chr18g0045501 Lupinus albus HOM05D003767 ORTHO05D004507 1.0e-32 144.1 80 85.0
Oeu027914.1 Olea europaea HOM05D003767 ORTHO05D004507 1.0e-32 144.1 80 83.8
RcHm_v2.0_Chr3g0453991 Rosa chinensis HOM05D003767 ORTHO05D004507 1.3e-32 143.7 83 77.1
AUR62000859 Chenopodium quinoa HOM05D003767 ORTHO05D004507 1.7e-32 143.3 80 83.8
Hund07038 Selenicereus undatus HOM05D003767 ORTHO05D004507 2.2e-32 142.9 80 81.2
SGA_v2.0_scaffold13G06464 Striga asiatica HOM05D003767 ORTHO05D004507 2.2e-32 142.9 80 82.5
EL10Ac4g09299 Beta vulgaris HOM05D003767 ORTHO05D004507 3.8e-32 142.1 80 85.0
Eucgr.H04452 Eucalyptus grandis HOM05D003767 ORTHO05D004507 3.8e-32 142.1 80 83.8
Medtr7g113890 Medicago truncatula HOM05D003767 ORTHO05D004507 3.8e-32 142.1 80 82.5
CSS0007130 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 4.9e-32 141.7 80 85.0
Manes.08G123500 Manihot esculenta HOM05D003767 ORTHO05D004507 4.9e-32 141.7 80 86.2
Zm00001eb137820 Zea mays HOM05D003767 ORTHO05D004507 6.5e-32 141.4 80 80.0
Cc02_g32590 Coffea canephora HOM05D003767 ORTHO05D004507 8.4e-32 141.0 80 83.8
Lj9A681G36 Lonicera japonica HOM05D003767 ORTHO05D004507 8.4e-32 141.0 80 82.5
Phvul.006G094600 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 8.4e-32 141.0 80 81.2
Ca_09376_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 1.1e-31 140.6 80 81.2
TWI56G0745 Tripterygium wilfordii HOM05D003767 ORTHO05D004507 1.1e-31 140.6 80 83.8
Migut.F01584 Erythranthe guttata HOM05D003767 ORTHO05D004507 1.4e-31 140.2 80 81.2
Phvul.006G094700 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 1.4e-31 140.2 80 82.5
CANSAT54G0870 Cannabis sativa HOM05D003767 ORTHO05D004507 1.9e-31 139.8 80 83.8
Ca_09375_v3 Cicer arietinum L. HOM05D003767 ORTHO05D004507 2.5e-31 139.4 80 80.0
DCAR_005538 Daucus carota HOM05D003767 ORTHO05D004507 2.5e-31 139.4 80 82.5
DCAR_029443 Daucus carota HOM05D003767 ORTHO05D004507 2.5e-31 139.4 80 82.5
FAN05G2944 Fragaria x ananassa HOM05D003767 ORTHO05D004507 2.5e-31 139.4 100 65.0
Glyma.19G237900 Glycine max HOM05D003767 ORTHO05D004507 2.5e-31 139.4 80 81.2
Medtr7g113880 Medicago truncatula HOM05D003767 ORTHO05D004507 2.5e-31 139.4 99 64.6
Nitab4.5_0004940g0030 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.5e-31 139.4 80 85.0
Actinidia23606 Actinidia chinensis HOM05D003767 ORTHO05D004507 3.2e-31 139.0 80 85.0
ECA238G2357 Erigeron canadensis HOM05D003767 ORTHO05D004507 3.2e-31 139.0 80 81.2
Glyma.19G237800 Glycine max HOM05D003767 ORTHO05D004507 3.2e-31 139.0 80 81.2
TPR.G33204 Trifolium pratense HOM05D003767 ORTHO05D004507 3.2e-31 139.0 80 78.8
Sc09g0003380 Simmondsia chinensis HOM05D003767 ORTHO05D004507 4.2e-31 138.7 80 80.0
Lj1g0000488 Lotus japonicus HOM05D003767 ORTHO05D004507 5.5e-31 138.3 80 78.8
TPR.G33164 Trifolium pratense HOM05D003767 ORTHO05D004507 5.5e-31 138.3 80 78.8
VMungo0540G0577 Vigna mungo HOM05D003767 ORTHO05D004507 5.5e-31 138.3 80 80.0
AUR62005115 Chenopodium quinoa HOM05D003767 ORTHO05D004507 7.1e-31 137.9 80 80.0
DCAR_002932 Daucus carota HOM05D003767 ORTHO05D004507 7.1e-31 137.9 80 80.0
Phvul.006G094500 Phaseolus vulgaris HOM05D003767 ORTHO05D004507 7.1e-31 137.9 80 78.8
Glyma.19G237700 Glycine max HOM05D003767 ORTHO05D004507 9.3e-31 137.5 80 78.8
CAN.G1134.12 Capsicum annuum HOM05D003767 ORTHO05D004507 1.2e-30 137.1 80 83.8
Glyma.03G240600 Glycine max HOM05D003767 ORTHO05D004507 1.2e-30 137.1 80 78.8
Lj1g0009738 Lotus japonicus HOM05D003767 ORTHO05D004507 1.6e-30 136.7 80 78.8
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.6e-30 136.7 94 68.1
Zm00001eb115490 Zea mays HOM05D003767 ORTHO05D004507 1.6e-30 136.7 80 77.5
HanXRQChr10g0295061 Helianthus annuus HOM05D003767 ORTHO05D004507 2.1e-30 136.3 80 77.5
Nitab4.5_0001423g0150 Nicotiana tabacum HOM05D003767 ORTHO05D004507 2.1e-30 136.3 80 82.5
Os11g0642800 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 2.1e-30 136.3 80 73.8
SalBow6G1775 Salvia bowleyana HOM05D003767 ORTHO05D003551 2.1e-30 136.3 80 81.2
Solyc01g098610.4 Solanum lycopersicum HOM05D003767 ORTHO05D004507 2.7e-30 136.0 80 83.8
Sopen01g042160 Solanum pennellii HOM05D003767 ORTHO05D004507 2.7e-30 136.0 80 83.8
PGSC0003DMG400028599 Solanum tuberosum HOM05D003767 ORTHO05D004507 2.7e-30 136.0 80 83.8
Aqoxy2G03198 Aquilegia oxysepala HOM05D003767 ORTHO05D004507 3.5e-30 135.6 94 69.1
Lsat_1_v5_gn_2_64341 Lactuca sativa HOM05D003767 ORTHO05D004507 3.5e-30 135.6 80 78.8
ECA238G1346 Erigeron canadensis HOM05D003767 ORTHO05D004507 4.6e-30 135.2 80 78.8
Psat3g009920 Pisum sativum HOM05D003767 ORTHO05D004507 6.0e-30 134.8 80 76.2
MD04G1210100 Malus domestica HOM05D003767 ORTHO05D004507 7.9e-30 134.4 80 76.2
THA.LOC104821704 Tarenaya hassleriana HOM05D003767 ORTHO05D004507 7.9e-30 134.4 80 73.8
Thhalv10003956m.g Eutrema salsugineum HOM05D003767 ORTHO05D004507 1.8e-29 133.3 80 75.0
PGR031G1040 Punica granatum HOM05D003767 ORTHO05D004507 1.8e-29 133.3 80 77.5
Sed0026847 Sechium edule HOM05D003767 ORTHO05D004507 1.8e-29 133.3 80 76.2
MSTRG.8108 Avicennia marina HOM05D003767 ORTHO05D004507 2.3e-29 132.9 80 77.5
MELO3C015345.2 Cucumis melo HOM05D003767 ORTHO05D004507 3.0e-29 132.5 80 80.0
CsaV3_1G039210 Cucumis sativus L. HOM05D003767 ORTHO05D004507 3.9e-29 132.1 79 79.7
CSS0020414 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 5.1e-29 131.7 66 95.5
Os12g0528400 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 5.1e-29 131.7 80 72.5
Peaxi162Scf00434g00336 Petunia axillaris HOM05D003767 ORTHO05D004507 5.1e-29 131.7 80 80.0
CSS0005723 Camellia sinensis var. sinensis HOM05D003767 ORTHO05D004507 6.7e-29 131.3 64 98.4
Sp2g20600 Schrenkiella parvula HOM05D003767 ORTHO05D004507 6.7e-29 131.3 80 73.8
C09p05700 Brassica napus HOM05D003767 ORTHO05D004507 1.1e-28 130.6 100 65.0
BcaB04g19665 Brassica carinata HOM05D003767 ORTHO05D004507 3.3e-28 129.0 80 72.5
Aa31LG11G9150 Aethionema arabicum HOM05D003767 ORTHO05D004507 4.3e-28 128.6 80 72.5
BcaNung04364 Brassica carinata HOM05D003767 ORTHO05D004507 5.7e-28 128.3 80 72.5
BcaC04g23683 Brassica carinata HOM05D003767 ORTHO05D004507 7.4e-28 127.9 80 72.5
BolC9t53499H Brassica oleracea HOM05D003767 ORTHO05D004507 7.4e-28 127.9 80 72.5
BraA09t36163Z Brassica rapa HOM05D003767 ORTHO05D004507 7.4e-28 127.9 80 72.5
CARHR185970 Cardamine hirsuta HOM05D003767 ORTHO05D004507 9.6e-28 127.5 80 71.2
SMO271G0026 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 9.6e-28 127.5 84 71.4
AL6G39640 Arabidopsis lyrata HOM05D003767 ORTHO05D004507 2.8e-27 125.9 80 70.0
BolC7t44598H Brassica oleracea HOM05D003767 ORTHO05D004507 2.8e-27 125.9 92 65.2
QL03p004251 Quercus lobata HOM05D003767 ORTHO05D004507 2.8e-27 125.9 65 87.7
A09p05240 Brassica napus HOM05D003767 ORTHO05D004507 3.7e-27 125.6 80 71.2
BcaNung02467 Brassica carinata HOM05D003767 ORTHO05D004507 6.2e-27 124.8 80 70.0
A06p37610 Brassica napus HOM05D003767 ORTHO05D004507 6.2e-27 124.8 80 70.0
C07p40700 Brassica napus HOM05D003767 ORTHO05D004507 6.2e-27 124.8 80 70.0
BraA06t26680Z Brassica rapa HOM05D003767 ORTHO05D004507 6.2e-27 124.8 80 70.0
Carub.0006s2517 Capsella rubella HOM05D003767 ORTHO05D004507 8.2e-27 124.4 80 66.2
COL.COLO4_12128 Corchorus olitorius HOM05D003767 ORTHO05D004507 1.1e-26 124.0 65 86.2
AT5G27380 Arabidopsis thaliana HOM05D003767 ORTHO05D004507 1.4e-26 123.6 80 68.8
Os12g0263000 Oryza sativa ssp. japonica HOM05D003767 ORTHO05D004507 1.4e-26 123.6 79 72.2
HanXRQChr14g0446461 Helianthus annuus HOM05D003767 ORTHO05D004507 3.1e-26 122.5 63 87.3
FAN09G3025 Fragaria x ananassa HOM05D003767 ORTHO05D004507 4.0e-26 122.1 65 83.1
Lalb_Chr15g0077051 Lupinus albus HOM05D003767 ORTHO05D004507 6.9e-26 121.3 67 83.6
Psat3g009360 Pisum sativum HOM05D003767 ORTHO05D004507 9.0e-26 120.9 65 84.6
MD12G1224500 Malus domestica HOM05D003767 ORTHO05D004507 1.5e-25 120.2 65 81.5
VMungo0540G2084 Vigna mungo HOM05D003767 ORTHO05D004507 2.6e-25 119.4 66 83.3
MBI17_g18114_MAGBIO Magnolia biondii HOM05D003767 ORTHO05D004507 4.5e-25 118.6 65 81.5
Mapoly0002s0041 Marchantia polymorpha HOM05D003767 ORTHO05D004507 4.5e-25 118.6 80 66.2
HPP92_001826 Vanilla planifolia HOM05D003767 ORTHO05D004507 4.5e-25 118.6 65 81.5
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 5.0e-24 115.2 80 67.5
ATR0626G007 Amborella trichopoda HOM05D003767 ORTHO05D004507 6.5e-24 114.8 64 82.8
FAN05G1904 Fragaria x ananassa HOM05D003767 ORTHO05D004507 7.1e-23 111.3 72 72.2
Pp3c1_36280 Physcomitrium patens HOM05D003767 ORTHO05D004507 3.9e-21 105.5 80 62.5
Cre17.g708800 Chlamydomonas reinhardtii HOM05D003767 ORTHO05D004507 4.3e-20 102.1 70 68.6
SEGI_31082 Sequoiadendron giganteum HOM05D003767 ORTHO05D004507 4.3e-20 102.1 67 65.7
ClCG03G016760 Citrullus lanatus HOM05D003767 ORTHO05D004507 1.3e-19 100.5 160 40.6
PRCOL_00004575 Prasinoderma coloniale HOM05D003767 ORTHO05D004507 1.2e-17 94.0 69 60.9
Actinidia05727 Actinidia chinensis HOM05D003767 ORTHO05D004507 1.5e-17 93.6 80 65.0
MCO07G639 Micromonas commoda HOM05D003767 ORTHO05D004507 4.5e-17 92.0 83 57.8
Psat1g075760 Pisum sativum HOM05D003767 ORTHO05D004507 5.0e-16 88.6 59 67.8
SMO304G0030 Selaginella moellendorffii HOM05D003767 ORTHO05D004507 5.0e-16 88.6 63 68.3
BolC5t32099H Brassica oleracea HOM05D003767 ORTHO05D041347 2.5e-15 86.3 73 64.4
C05p33690 Brassica napus HOM05D003767 ORTHO05D041347 2.7e-14 82.8 46 84.8
CAN.G299.1 Capsicum annuum HOM05D003767 ORTHO05D004507 3.0e-13 79.3 41 90.2
Cfa024552 Carpinus fangiana HOM05D003767 ORTHO05D004507 2.0e-12 76.6 89 43.8
RcHm_v2.0_Chr2g0172961 Rosa chinensis HOM05D003767 ORTHO05D004507 4.1e-10 68.9 34 94.1
Haze_04251 Corylus avellana HOM05D003767 ORTHO05D004507 3.4e-09 65.9 38 81.6
TAR636G1925 Trochodendron aralioides HOM05D003767 ORTHO05D004507 4.5e-09 65.5 34 91.2
VMungo0540G2112 Vigna mungo HOM05D003767 ORTHO05D004507 7.7e-09 64.7 38 73.7
RcHm_v2.0_Chr2g0172971 Rosa chinensis HOM05D003767 ORTHO05D004507 1.1e-07 60.8 38 65.8
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 2.7e-06 56.2 29 89.7
AagrBONN_evm.TU.Sc2ySwM_117.2518 Anthoceros agrestis HOM05D003767 ORTHO05D004507 6.1e-06 55.1 38 65.8


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