Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.1e-25 119.4 67 100.0
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.4e-22 107.1 67 94.0
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 3.5e-21 104.4 67 88.1
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 4.6e-21 104.0 67 89.6
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 7.9e-21 103.2 67 88.1
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 7.9e-21 103.2 67 86.6
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.3e-20 101.7 67 85.1
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.0e-20 101.3 71 84.5
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 3.0e-20 101.3 71 84.5
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 3.0e-20 101.3 67 86.6
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 3.9e-20 100.9 67 82.1
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.9e-20 100.9 67 83.6
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.9e-20 100.9 67 83.6
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 3.9e-20 100.9 67 83.6
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.9e-20 100.9 67 85.1
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 5.1e-20 100.5 67 83.6
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 6.7e-20 100.1 67 86.6
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 6.7e-20 100.1 67 82.1
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.7e-20 99.8 68 83.8
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.7e-20 99.8 67 86.6
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.1e-19 99.4 67 85.1
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 1.1e-19 99.4 67 85.1
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 1.5e-19 99.0 67 83.6
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.5e-19 99.0 67 83.6
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.9e-19 98.6 67 83.6
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.9e-19 98.6 67 85.1
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.9e-19 98.6 67 85.1
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 1.9e-19 98.6 65 86.2
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 3.3e-19 97.8 68 85.3
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 3.3e-19 97.8 67 85.1
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.3e-19 97.4 65 81.5
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 4.3e-19 97.4 67 80.6
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 5.6e-19 97.1 67 82.1
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.6e-19 97.1 68 82.4
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 5.6e-19 97.1 67 83.6
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 7.4e-19 96.7 67 85.1
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 9.6e-19 96.3 65 86.2
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.3e-18 95.9 67 83.6
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 83.1
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 1.6e-18 95.5 67 80.6
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 80.0
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 1.6e-18 95.5 65 80.0
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 1.6e-18 95.5 67 80.6
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 2.1e-18 95.1 67 80.6
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 2.1e-18 95.1 67 80.6
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 2.1e-18 95.1 65 81.5
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 3.6e-18 94.4 66 81.8
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 3.6e-18 94.4 65 84.6
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 4.8e-18 94.0 64 82.8
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 4.8e-18 94.0 67 82.1
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 8.1e-18 93.2 63 82.5
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 8.1e-18 93.2 62 85.5
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 1.1e-17 92.8 65 80.0
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 1.4e-17 92.4 67 79.1
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.4e-17 92.4 64 81.2
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 1.4e-17 92.4 65 80.0
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 2.4e-17 91.7 66 84.8
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 5.3e-17 90.5 67 77.6
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 1.2e-16 89.4 70 75.7
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 1.5e-16 89.0 65 72.3
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 1.5e-16 89.0 62 82.3
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.0e-16 88.6 67 76.1
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.4e-16 87.8 61 86.9
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 3.4e-16 87.8 67 76.1
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 3.4e-16 87.8 65 76.9
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 5.8e-16 87.0 66 75.8
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 7.6e-16 86.7 64 78.1
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 9.9e-16 86.3 67 73.1
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 9.9e-16 86.3 67 73.1
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 1.3e-15 85.9 61 77.0
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 1.7e-15 85.5 67 71.6
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 2.2e-15 85.1 63 76.2
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 2.9e-15 84.7 65 72.3
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.8e-15 84.3 62 77.4
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 6.4e-15 83.6 59 84.7
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 1.4e-14 82.4 70 72.9
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 2.4e-14 81.6 77 70.1
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 3.2e-14 81.3 58 79.3
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 4.2e-14 80.9 65 66.2
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 5.5e-14 80.5 65 69.2
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 5.5e-14 80.5 59 81.4
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 7.1e-14 80.1 65 69.2
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 7.1e-14 80.1 55 83.6
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.2e-13 79.3 67 68.7
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.1e-13 78.6 52 86.5
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 3.5e-13 77.8 64 65.6
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 3.5e-13 77.8 64 65.6
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 4.6e-13 77.4 65 67.7
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 6.0e-13 77.0 65 67.7
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 6.0e-13 77.0 65 67.7
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 7.9e-13 76.6 62 64.5
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 7.9e-13 76.6 62 64.5
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 7.9e-13 76.6 65 67.7
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 7.9e-13 76.6 65 67.7
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 7.9e-13 76.6 65 67.7
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 3.0e-12 74.7 65 64.6
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 5.1e-12 73.9 63 66.7
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 6.7e-12 73.6 62 72.6
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 1.9e-11 72.0 62 69.4
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 5.3e-09 63.9 60 61.7
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 6.9e-09 63.5 62 59.7
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 1.5e-08 62.4 62 58.1
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 2.0e-08 62.0 62 58.1
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 3.4e-08 61.2 76 53.9
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 3.4e-08 61.2 46 78.3
SalBow6G2712 Salvia bowleyana HOM05D008947 ORTHO05D010748 5.8e-08 60.5 51 72.5
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 7.6e-08 60.1 60 58.3
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 7.6e-08 60.1 61 55.7
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.0e-07 59.7 64 56.2
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.0e-07 59.7 64 54.7
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 1.3e-07 59.3 60 58.3
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 1.3e-07 59.3 62 58.1
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.7e-07 58.9 60 58.3
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 1.7e-07 58.9 60 58.3
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 1.7e-07 58.9 60 58.3
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 2.2e-07 58.5 60 55.0
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 2.9e-07 58.2 54 61.1
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 2.9e-07 58.2 62 53.2
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 2.9e-07 58.2 56 60.7
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 3.8e-07 57.8 60 55.0
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 3.8e-07 57.8 64 53.1
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 4.9e-07 57.4 62 53.2
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 6.5e-07 57.0 61 54.1
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 6.5e-07 57.0 61 54.1
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.5e-07 57.0 60 56.7
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.4e-06 55.8 60 53.3
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.9e-06 55.5 56 53.6
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.5e-06 55.1 65 53.8
AUR62030864 Chenopodium quinoa HOM05D001568 ORTHO05D004404 4.2e-06 54.3 74 50.0
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 4.2e-06 54.3 65 53.8
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 5.5e-06 53.9 62 48.4
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 5.5e-06 53.9 63 52.4
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 5.5e-06 53.9 54 59.3
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 5.5e-06 53.9 62 53.2
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 5.5e-06 53.9 62 53.2
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 7.1e-06 53.5 61 54.1
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 9.3e-06 53.1 60 46.7
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 9.3e-06 53.1 62 51.6
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 9.3e-06 53.1 62 51.6


User provided reference genes

Program Settings