Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 0.0e+00 1329.7 709 100.0
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 0.0e+00 1140.2 697 83.8
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 0.0e+00 1130.2 698 83.0
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 0.0e+00 1112.1 685 82.6
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 0.0e+00 1111.3 686 84.8
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 0.0e+00 1107.4 683 82.7
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 0.0e+00 1096.6 683 81.4
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 0.0e+00 1079.3 683 79.5
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 4.9e-312 1073.9 686 80.2
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.5e-311 1072.4 674 80.6
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 4.4e-311 1070.8 684 81.3
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.6e-308 1061.6 735 78.1
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 3.4e-308 1061.2 684 78.5
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 2.1e-305 1052.0 683 77.2
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 4.8e-302 1040.8 681 80.3
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.8e-301 1038.9 683 79.6
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 2.0e-300 1035.4 684 77.9
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 3.4e-300 1034.6 682 76.5
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.3e-299 1032.7 682 77.3
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 2.2e-299 1031.9 677 77.5
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 8.5e-299 1030.0 683 76.7
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 1.4e-298 1029.2 682 78.9
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 1.4e-298 1029.2 682 78.9
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 4.2e-298 1027.7 677 77.7
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 1.1e-295 1019.6 713 73.5
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 1.7e-294 1015.8 682 76.0
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 4.8e-294 1014.2 687 75.1
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 7.0e-293 1010.4 684 76.9
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 9.1e-293 1010.0 687 75.3
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 5.9e-292 1007.3 683 75.0
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 1.7e-291 1005.7 687 74.5
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.7e-291 1005.7 687 74.5
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 3.8e-291 1004.6 690 73.6
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 2.3e-288 995.3 685 73.6
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 4.4e-287 991.1 676 72.9
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 2.8e-286 988.4 698 74.4
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 6.3e-286 987.3 679 72.9
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 1.6e-284 982.6 686 74.2
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 3.5e-284 981.5 684 72.2
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 6.5e-283 977.2 679 72.2
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 1.6e-281 972.6 682 73.0
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 2.7e-281 971.8 682 71.6
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 4.7e-281 971.1 684 72.7
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 1.3e-278 963.0 682 73.0
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 3.7e-278 961.4 684 72.1
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 8.2e-278 960.3 682 74.3
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 4.1e-277 958.0 662 75.2
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 5.3e-277 957.6 684 72.1
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 7.0e-277 957.2 682 71.0
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.3e-275 953.0 683 70.3
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 1.3e-275 953.0 664 72.7
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 5.0e-275 951.0 685 69.3
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 1.2e-273 946.4 678 70.6
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 8.0e-273 943.7 687 72.2
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 1.0e-272 943.3 683 70.9
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 1.4e-272 943.0 652 75.6
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 1.2e-271 939.9 674 71.7
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 1.5e-271 939.5 689 73.6
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 4.1e-269 931.4 684 69.0
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 4.1e-269 931.4 694 69.6
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 5.4e-269 931.0 684 69.0
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 4.5e-268 927.9 686 71.0
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 2.9e-267 925.2 721 68.1
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 1.5e-266 922.9 686 69.8
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 1.5e-266 922.9 686 70.1
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.8e-264 916.0 687 69.1
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 1.7e-262 909.4 716 66.5
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 2.8e-262 908.7 716 66.5
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 4.9e-262 907.9 678 69.0
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 1.4e-261 906.4 1009 52.5
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 1.8e-261 906.0 678 67.4
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 7.5e-255 884.0 690 68.1
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 6.4e-254 880.9 578 77.3
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 9.2e-253 877.1 683 67.1
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 3.5e-252 875.2 692 69.1
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 6.0e-252 874.4 691 68.5
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 2.3e-251 872.5 689 69.4
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 8.6e-251 870.5 689 69.1
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 8.6e-251 870.5 689 69.2
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 8.6e-251 870.5 693 68.5
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 4.3e-250 868.2 693 66.5
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 8.0e-249 864.0 692 68.6
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 1.1e-248 863.6 692 68.6
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 2.4e-245 852.4 693 64.4
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 5.4e-237 824.7 510 79.0
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 3.3e-234 815.5 684 63.6
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 1.4e-232 810.1 688 61.6
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 5.2e-232 808.1 697 63.3
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.5e-231 806.6 694 63.3
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.5e-231 806.6 694 63.3
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 3.4e-231 805.4 697 63.1
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 2.8e-225 785.8 721 60.6
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 5.3e-224 781.6 452 83.6
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 6.9e-224 781.2 543 74.0
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 9.0e-224 780.8 694 64.0
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 5.8e-215 751.5 686 56.7
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 4.9e-214 748.4 695 54.8
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 2.4e-213 746.1 827 51.3
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 8.7e-211 737.6 711 55.1
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 5.3e-208 728.4 684 58.8
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 7.1e-205 718.0 511 70.5
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 2.1e-204 716.5 674 55.0
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 7.9e-204 714.5 664 57.8
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 2.1e-201 706.4 438 80.4
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 1.6e-180 637.1 423 70.7
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 6.3e-169 598.6 580 57.6
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 4.5e-167 592.4 543 58.4
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 3.6e-164 582.8 694 46.5
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 2.4e-152 543.5 556 58.8
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 1.4e-144 517.7 676 42.9
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 1.2e-143 514.6 713 42.1
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 8.3e-137 491.9 439 63.6
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 7.3e-133 478.8 411 66.7
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 7.6e-122 442.2 434 55.1
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 6.6e-118 429.1 538 42.2
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 3.5e-103 380.2 425 53.4
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 3.9e-102 376.7 299 64.9
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 9.9e-98 362.1 218 83.5
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 3.9e-94 350.1 371 56.9
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 4.3e-93 346.7 651 38.6
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-86 325.1 306 56.2
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 1.1e-85 322.0 616 35.2
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 1.4e-83 315.1 264 73.5
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 2.9e-81 307.4 262 66.8
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 1.8e-78 298.1 259 71.4
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 3.9e-78 297.0 259 71.4
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 1.5e-77 295.0 366 51.1
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 2.7e-71 274.2 262 58.8
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 3.6e-71 273.9 256 57.8
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-67 262.3 240 55.8
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 9.7e-61 239.2 131 87.8
Thecc.05G137500 Theobroma cacao HOM05D003729 ORTHO05D004384 1.7e-60 238.4 236 65.7
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 5.5e-56 223.4 186 59.7
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 1.2e-55 222.2 141 78.0
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 1.6e-47 195.3 107 86.0
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 2.4e-43 181.4 102 84.3
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 7.0e-43 179.9 102 83.3
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 9.1e-43 179.5 119 73.9
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 9.1e-43 179.5 119 70.6
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 4.5e-42 177.2 175 53.1
Hund24619 Selenicereus undatus HOM05D003729 ORTHO05D004384 5.5e-40 170.2 163 60.7
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 5.2e-38 163.7 149 56.4
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 6.8e-38 163.3 207 47.3
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.0e-37 161.8 89 85.4
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.0e-37 161.8 89 85.4
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.0e-37 161.8 89 85.4
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.4e-37 161.0 103 78.6
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 2.2e-36 158.3 120 68.3
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.7e-36 157.5 85 85.9
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 9.2e-35 152.9 79 87.3
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 9.2e-35 152.9 107 64.5
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.6e-34 152.1 79 87.3
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 2.0e-34 151.8 207 40.6
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 5.9e-34 150.2 225 40.0
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 4.3e-32 144.1 106 65.1
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-27 128.3 70 78.6
SHI51948 Sapria himalayana HOM05D003729 ORTHO05D004384 3.0e-25 121.3 189 53.4
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 3.3e-24 117.9 64 78.1
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 5.2e-22 110.5 107 57.0
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 5.8e-21 107.1 88 62.5
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 2.2e-20 105.1 56 83.9
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-19 101.7 95 54.7
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 3.2e-19 101.3 56 78.6
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 4.1e-19 100.9 60 76.7
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 7.0e-19 100.1 55 78.2
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 7.0e-19 100.1 56 76.8
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 9.2e-19 99.8 70 67.1
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-18 98.6 60 76.7
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 1.0e-17 96.3 109 48.6
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 5.0e-17 94.0 55 76.4
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 5.0e-17 94.0 77 59.7
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 9.5e-16 89.7 140 40.0
SHI44104 Sapria himalayana HOM05D003729 ORTHO05D004384 1.2e-15 89.4 253 40.7
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 6.2e-15 87.0 48 81.2
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 1.1e-14 86.3 57 73.7
Oeu029504.1 Olea europaea HOM05D003729 ORTHO05D004384 3.1e-14 84.7 97 55.7
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 6.8e-14 83.6 63 66.7
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 8.9e-14 83.2 50 76.0
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 8.9e-14 83.2 50 76.0
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 2.0e-13 82.0 47 78.7
SHI50413 Sapria himalayana HOM05D003729 ORTHO05D004384 5.8e-13 80.5 211 35.5
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 6.4e-12 77.0 77 51.9
SHI40171 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-11 75.5 89 52.8
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 1.3e-09 69.3 51 60.8
THA.LOC104802556 Tarenaya hassleriana HOM05D004531 ORTHO05D005484 1.3e-09 69.3 107 45.8
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 2.3e-09 68.6 152 32.2
SHI50318 Sapria himalayana HOM05D003729 ORTHO05D004384 1.1e-08 66.2 190 33.7
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 2.8e-07 61.6 36 69.4


User provided reference genes

Program Settings