Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 5.2e-136 488.0 306 100.0
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 2.0e-103 379.8 242 79.8
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.1e-100 369.8 238 76.9
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 5.2e-96 355.1 235 77.4
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.3e-94 350.5 234 76.9
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.6e-92 343.6 234 75.2
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 2.7e-92 342.8 240 73.8
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 4.6e-92 342.0 234 73.1
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 3.0e-91 339.3 234 73.1
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.5e-90 337.0 234 73.1
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 4.3e-90 335.5 234 72.2
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 4.9e-86 322.0 244 66.4
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 9.3e-85 317.8 240 66.7
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 1.6e-84 317.0 282 62.4
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.7e-83 313.5 237 65.4
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.1e-82 310.8 240 68.3
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 1.5e-82 310.5 301 58.8
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 1.9e-82 310.1 193 77.7
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 7.3e-82 308.1 237 67.1
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 1.6e-81 307.0 243 65.0
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 3.6e-81 305.8 244 64.8
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 8.1e-81 304.7 238 65.1
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 4.0e-80 302.4 236 64.0
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 6.9e-80 301.6 204 73.0
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 6.9e-80 301.6 239 63.6
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 6.9e-80 301.6 239 63.6
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 6.9e-80 301.6 241 63.5
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 9.0e-80 301.2 243 64.2
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.5e-79 300.4 194 73.7
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.5e-79 300.4 267 59.6
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 2.0e-79 300.1 237 65.4
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 2.0e-79 300.1 241 63.5
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 2.6e-79 299.7 226 65.9
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 4.5e-79 298.9 226 65.9
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 1.3e-78 297.4 244 62.7
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.3e-78 297.4 226 64.6
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 2.2e-78 296.6 231 64.5
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 2.9e-78 296.2 234 64.1
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 6.4e-78 295.0 231 63.6
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 6.4e-78 295.0 236 63.6
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 8.4e-78 294.7 239 62.8
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.4e-77 293.9 236 61.9
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 1.4e-77 293.9 228 64.9
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 2.4e-77 293.1 263 59.3
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 4.2e-77 292.4 193 72.5
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 4.2e-77 292.4 238 64.7
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 7.1e-77 291.6 236 62.3
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 9.3e-77 291.2 230 62.2
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 1.2e-76 290.8 260 58.8
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 2.1e-76 290.0 234 63.2
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.5e-76 289.3 239 63.2
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 4.6e-76 288.9 190 72.6
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 6.0e-76 288.5 233 60.1
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.3e-75 287.3 191 72.3
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 1.8e-75 287.0 234 61.1
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 1.8e-75 287.0 228 63.6
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 1.8e-75 287.0 191 71.7
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 2.3e-75 286.6 235 61.3
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 2.3e-75 286.6 202 68.8
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 8.7e-75 284.6 240 61.7
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.1e-74 284.3 190 73.7
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 1.5e-74 283.9 237 61.2
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 1.5e-74 283.9 205 67.8
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.9e-74 283.5 167 81.4
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 3.3e-74 282.7 188 73.4
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 5.6e-74 282.0 186 72.0
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 5.6e-74 282.0 189 69.8
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 5.6e-74 282.0 240 61.2
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 1.3e-73 280.8 188 71.3
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.6e-73 280.4 241 60.2
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 2.1e-73 280.0 218 67.0
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 2.8e-73 279.6 198 68.7
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.8e-73 278.9 234 59.8
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.8e-73 278.9 234 59.8
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 1.1e-72 277.7 236 62.3
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.4e-72 277.3 234 59.8
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 1.8e-72 276.9 193 72.0
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 1.8e-72 276.9 241 61.8
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 9.0e-72 274.6 186 69.9
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 9.0e-72 274.6 242 58.7
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.5e-71 273.9 232 60.3
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.4e-71 272.7 239 61.5
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 5.8e-71 271.9 235 60.0
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 5.8e-71 271.9 235 60.0
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 5.8e-71 271.9 232 59.5
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 7.6e-71 271.6 235 59.6
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 1.0e-70 271.2 241 58.9
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.0e-70 271.2 242 58.3
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 3.8e-70 269.2 233 60.1
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 3.8e-70 269.2 233 60.1
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 3.2e-69 266.2 232 58.2
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 1.6e-68 263.8 226 60.2
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 1.6e-68 263.8 243 58.8
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.1e-66 257.7 190 66.8
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 1.9e-66 256.9 191 64.4
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 3.7e-65 252.7 178 67.4
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 1.5e-63 247.3 186 64.5
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 3.4e-63 246.1 205 61.0
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.3e-62 244.2 186 64.5
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 9.7e-58 228.0 178 64.0
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 2.4e-56 223.4 235 49.4
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 1.1e-53 214.5 234 50.0
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 4.6e-52 209.1 205 55.6
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 2.5e-50 203.4 191 56.0
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.6e-47 193.4 179 53.6
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.4e-47 193.0 179 53.6
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.0e-46 191.4 179 53.1
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 2.2e-46 190.3 239 43.1
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.7e-44 182.6 158 57.0
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 1.2e-39 167.9 172 44.2
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 6.5e-38 162.2 97 84.5
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 8.5e-38 161.8 93 87.1
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 1.7e-30 137.5 77 84.4
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 4.2e-29 132.9 208 38.9
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 5.5e-29 132.5 206 41.7
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 5.5e-29 132.5 206 41.7
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 5.5e-29 132.5 77 79.2
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 8.0e-28 128.6 175 40.0
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-27 127.9 186 43.5
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 7.7e-23 112.1 156 41.7
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 7.2e-21 105.5 140 42.1
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 2.6e-18 97.1 136 44.9
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.8e-17 93.6 68 64.7
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 2.8e-12 77.0 48 77.1
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 3.0e-11 73.6 49 71.4
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 1.5e-10 71.2 107 39.3
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.5e-10 71.2 79 48.1
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 2.2e-09 67.4 124 35.5
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 1.8e-08 64.3 161 30.4
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 3.2e-08 63.5 122 33.6
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 4.1e-08 63.2 75 36.0
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 7.0e-08 62.4 107 38.3
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 7.0e-08 62.4 49 67.3
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 9.2e-08 62.0 163 30.1
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 1.2e-07 61.6 122 32.0
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 1.2e-07 61.6 117 34.2
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 1.6e-07 61.2 162 31.5
Lalb_Chr11g0071961 Lupinus albus HOM05D006752 ORTHO05D008597 3.5e-07 60.1 124 32.3
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 3.5e-07 60.1 122 34.4
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.5e-07 60.1 37 73.0
FAN28G1533 Fragaria x ananassa HOM05D006752 ORTHO05D008597 4.6e-07 59.7 122 33.6
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 4.6e-07 59.7 61 50.8
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 4.6e-07 59.7 117 35.0
ECA234G0120 Erigeron canadensis HOM05D006752 ORTHO05D008597 5.9e-07 59.3 117 35.0
FAN19G2061 Fragaria x ananassa HOM05D006752 ORTHO05D008597 5.9e-07 59.3 122 32.8
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 7.8e-07 58.9 117 34.2
FvH4_1g04220 Fragaria vesca HOM05D006752 ORTHO05D008597 7.8e-07 58.9 122 32.8
FAN26G3101 Fragaria x ananassa HOM05D006752 ORTHO05D008597 7.8e-07 58.9 122 32.8
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 1.0e-06 58.5 120 31.7
VMungo1309G1199 Vigna mungo HOM05D006752 ORTHO05D008597 1.0e-06 58.5 123 32.5
Aqoxy7G01881 Aquilegia oxysepala HOM05D006752 ORTHO05D008597 1.3e-06 58.2 124 36.3
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.3e-06 58.2 133 33.1
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.3e-06 58.2 108 37.0
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 1.3e-06 58.2 108 37.0
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 1.3e-06 58.2 182 27.5
Lj1g0009545 Lotus japonicus HOM05D006752 ORTHO05D008597 2.3e-06 57.4 123 34.1
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.3e-06 57.4 96 36.5
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 2.3e-06 57.4 96 36.5
CiPaw.04G167500 Carya illinoinensis HOM05D006752 ORTHO05D008597 2.9e-06 57.0 126 31.7
SGA_v2.0_scaffold229G43313 Striga asiatica HOM05D006752 ORTHO05D008597 3.9e-06 56.6 177 30.5
Lj7C639G3 Lonicera japonica HOM05D006752 ORTHO05D008597 6.6e-06 55.8 118 33.1
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 6.6e-06 55.8 77 44.2
PGR142G0135 Punica granatum HOM05D006752 ORTHO05D008597 6.6e-06 55.8 134 30.6
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 8.6e-06 55.5 117 33.3
ATR0815G047 Amborella trichopoda HOM05D006752 ORTHO05D008597 8.6e-06 55.5 122 28.7
Glyma.06G211500 Glycine max HOM05D006752 ORTHO05D008597 8.6e-06 55.5 96 35.4
Sc08g0007050 Simmondsia chinensis HOM05D006752 ORTHO05D008597 8.6e-06 55.5 117 35.0


User provided reference genes

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