Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0000146 Camellia sinensis var. sinensis HOM05D002214 ORTHO05D007367 1.7e-232 808.9 402 100.0
Rhsim07G0058900 Rhododendron simsii HOM05D002214 ORTHO05D007367 2.1e-185 652.5 435 76.1
Actinidia19424 Actinidia chinensis HOM05D002214 ORTHO05D007367 5.3e-181 637.9 435 73.8
vmacro13697 Vaccinium macrocarpon HOM05D002214 ORTHO05D007367 2.6e-175 619.0 489 66.5
Hma1.2p1_0685F.1_g203260 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 5.0e-163 578.2 435 66.2
CiPaw.14G003400 Carya illinoinensis HOM05D002214 ORTHO05D007367 1.7e-147 526.6 435 62.3
GSVIVG01032215001 Vitis vinifera HOM05D002214 ORTHO05D007367 2.1e-145 519.6 434 61.5
Cfa010812 Carpinus fangiana HOM05D002214 ORTHO05D007367 1.8e-144 516.5 437 60.2
Ciclev10031605m.g Citrus clementina HOM05D002214 ORTHO05D007367 2.6e-143 512.7 433 60.3
CAN.G909.6 Capsicum annuum HOM05D002214 ORTHO05D007367 8.3e-142 507.7 423 61.2
Gorai.004G170100 Gossypium raimondii HOM05D002214 ORTHO05D007367 2.3e-139 499.6 433 57.0
TWI09G0406 Tripterygium wilfordii HOM05D002214 ORTHO05D007367 3.0e-139 499.2 434 59.0
Gohir.A08G142300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 6.6e-139 498.0 432 57.2
Sopen01g034840 Solanum pennellii HOM05D002214 ORTHO05D007367 8.6e-139 497.7 435 59.3
Solyc01g087910.4 Solanum lycopersicum HOM05D002214 ORTHO05D007367 2.5e-138 496.1 436 58.9
Potri.009G056500 Populus trichocarpa HOM05D002214 ORTHO05D007367 1.6e-137 493.4 431 59.4
Duzib138G1340 Durio zibethinus HOM05D002214 ORTHO05D007367 4.7e-137 491.9 423 58.4
Thecc.01G406200 Theobroma cacao HOM05D002214 ORTHO05D007367 3.1e-136 489.2 434 58.3
RcHm_v2.0_Chr1g0318361 Rosa chinensis HOM05D002214 ORTHO05D007367 1.5e-135 486.9 430 58.1
Manes.07G010800 Manihot esculenta HOM05D002214 ORTHO05D007367 2.0e-135 486.5 433 58.4
Sc11g0009040 Simmondsia chinensis HOM05D002214 ORTHO05D007367 2.0e-135 486.5 426 57.0
CANSAT80G0536 Cannabis sativa HOM05D002214 ORTHO05D007367 2.9e-134 482.6 430 56.5
Aqoxy2G00221 Aquilegia oxysepala HOM05D002214 ORTHO05D007367 3.7e-134 482.3 419 57.8
Migut.N01800 Erythranthe guttata HOM05D002214 ORTHO05D007367 4.9e-134 481.9 456 55.7
Cc02_g28820 Coffea canephora HOM05D002214 ORTHO05D007367 2.4e-133 479.6 529 47.3
SGA_v2.0_scaffold5G02954 Striga asiatica HOM05D002214 ORTHO05D007367 5.4e-133 478.4 437 57.4
FAN03G2729 Fragaria x ananassa HOM05D002214 ORTHO05D007367 7.8e-132 474.6 424 56.8
FAN10G2270 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.6e-131 471.1 422 56.9
Nn7g36334 Nelumbo nucifera HOM05D002214 ORTHO05D007367 4.3e-130 468.8 413 57.4
AUR62023095 Chenopodium quinoa HOM05D002214 ORTHO05D007367 1.4e-128 463.8 425 56.0
DCAR_022375 Daucus carota HOM05D002214 ORTHO05D007367 3.1e-128 462.6 432 54.9
Eucgr.G03320 Eucalyptus grandis HOM05D002214 ORTHO05D007367 7.5e-127 458.0 411 56.4
Eucgr.G03301 Eucalyptus grandis HOM05D002214 ORTHO05D007367 1.3e-126 457.2 411 56.2
Nitab4.5_0008942g0050 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.2e-126 456.4 400 59.5
MD07G1023200 Malus domestica HOM05D002214 ORTHO05D007367 8.3e-126 454.5 439 53.5
CsaV3_7G030710 Cucumis sativus L. HOM05D002214 ORTHO05D007367 2.4e-125 453.0 431 53.4
Prupe.2G024000 Prunus persica HOM05D002214 ORTHO05D007367 1.6e-124 450.3 436 54.8
Sed0008197 Sechium edule HOM05D002214 ORTHO05D007367 1.7e-123 446.8 431 53.6
Nitab4.5_0001244g0060 Nicotiana tabacum HOM05D002214 ORTHO05D007367 2.3e-123 446.4 419 56.1
Lsat_1_v5_gn_7_35840 Lactuca sativa HOM05D002214 ORTHO05D007367 3.9e-123 445.7 432 52.8
TAR633G1256 Trochodendron aralioides HOM05D002214 ORTHO05D007367 1.6e-121 440.3 381 58.8
QL04p010195 Quercus lobata HOM05D002214 ORTHO05D007367 1.1e-120 437.6 447 53.7
THA.LOC104817574 Tarenaya hassleriana HOM05D002214 ORTHO05D007367 1.1e-120 437.6 435 53.3
Peaxi162Scf01270g00126 Petunia axillaris HOM05D002214 ORTHO05D007367 5.2e-120 435.3 453 53.4
Lj3g0007976 Lotus japonicus HOM05D002214 ORTHO05D007367 4.9e-118 428.7 425 52.9
Lalb_Chr25g0282551 Lupinus albus HOM05D002214 ORTHO05D007367 1.1e-117 427.6 422 54.5
Medtr3g034210 Medicago truncatula HOM05D002214 ORTHO05D007367 7.1e-117 424.9 434 50.0
C07p46730 Brassica napus HOM05D002214 ORTHO05D007367 4.6e-116 422.2 434 50.5
Thhalv10010397m.g Eutrema salsugineum HOM05D002214 ORTHO05D007367 4.6e-116 422.2 434 50.7
A03p48610 Brassica napus HOM05D002214 ORTHO05D007367 7.8e-116 421.4 434 50.7
Psat5g212440 Pisum sativum HOM05D002214 ORTHO05D007367 7.8e-116 421.4 438 50.5
BcaC06g33020 Brassica carinata HOM05D002214 ORTHO05D007367 1.3e-115 420.6 434 50.2
BcaC06g33377 Brassica carinata HOM05D002214 ORTHO05D007367 1.3e-115 420.6 434 50.5
CARHR161660 Cardamine hirsuta HOM05D002214 ORTHO05D007367 1.3e-115 420.6 435 50.6
Atru.chr11.2515 Acer truncatum HOM05D002214 ORTHO05D007367 2.3e-115 419.9 429 52.9
Ca_24837_v3 Cicer arietinum L. HOM05D002214 ORTHO05D007367 3.0e-115 419.5 425 51.5
Glyma.11G159230 Glycine max HOM05D002214 ORTHO05D007367 6.6e-115 418.3 413 51.8
ECA236G0637 Erigeron canadensis HOM05D002214 ORTHO05D001664 8.6e-115 417.9 415 52.0
Dinv07431 Davidia involucrata HOM05D002214 ORTHO05D005113 1.9e-114 416.8 312 68.9
AT3G52030 Arabidopsis thaliana HOM05D002214 ORTHO05D007367 3.3e-114 416.0 434 50.2
Sp5g10260 Schrenkiella parvula HOM05D002214 ORTHO05D007367 9.6e-114 414.5 422 51.4
arahy.Tifrunner.gnm1.ann1.IP56PK Arachis hypogaea HOM05D002214 ORTHO05D007367 1.6e-113 413.7 421 50.6
TPR.G14558 Trifolium pratense HOM05D002214 ORTHO05D007367 2.1e-113 413.3 423 50.4
Carub.0005s1835 Capsella rubella HOM05D002214 ORTHO05D007367 1.4e-112 410.6 431 49.9
arahy.Tifrunner.gnm1.ann1.KRTV89 Arachis hypogaea HOM05D002214 ORTHO05D007367 1.8e-112 410.2 421 50.4
BolC7t45191H Brassica oleracea HOM05D002214 ORTHO05D007367 1.8e-112 410.2 451 48.1
Phvul.005G035100 Phaseolus vulgaris HOM05D002214 ORTHO05D007367 2.0e-111 406.8 422 51.7
AL5G32570 Arabidopsis lyrata HOM05D002214 ORTHO05D007367 4.4e-111 405.6 449 48.3
PGR031G3638 Punica granatum HOM05D002214 ORTHO05D007367 8.4e-110 401.4 470 46.0
unitig_22.g5896 Utricularia gibba HOM05D002214 ORTHO05D007367 2.4e-109 399.8 408 50.5
PSO339G3363 Papaver somniferum HOM05D002214 ORTHO05D007367 9.3e-109 397.9 435 49.9
PSO384G3385 Papaver somniferum HOM05D002214 ORTHO05D007367 7.8e-108 394.8 436 50.0
Gohir.D08G163300 Gossypium hirsutum HOM05D002214 ORTHO05D007367 4.3e-106 389.0 312 60.6
VMungo1217G0001 Vigna mungo HOM05D002214 ORTHO05D007367 4.3e-106 389.0 436 47.5
BraA03t13966Z Brassica rapa HOM05D002214 ORTHO05D007367 9.6e-106 387.9 436 47.7
Ah.16g100650 Amaranthus hybridus HOM05D002214 ORTHO05D007367 8.4e-102 374.8 371 51.8
FvH4_7g01770 Fragaria vesca HOM05D002214 ORTHO05D007367 1.4e-101 374.0 266 67.7
Os11g0182400 Oryza sativa ssp. japonica HOM05D002214 ORTHO05D007367 2.1e-97 360.1 412 45.4
AUR62009418 Chenopodium quinoa HOM05D002214 ORTHO05D007367 4.8e-97 359.0 390 48.2
MBI03_g28525_MAGBIO Magnolia biondii HOM05D002214 ORTHO05D007367 6.2e-97 358.6 422 46.7
EL10Ac2g04369 Beta vulgaris HOM05D002214 ORTHO05D007367 8.1e-97 358.2 428 47.4
QL04p010150 Quercus lobata HOM05D002214 ORTHO05D007367 2.0e-95 353.6 346 55.2
Zm00001eb091260 Zea mays HOM05D002214 ORTHO05D007367 5.8e-95 352.1 432 44.7
ClCG09G004430 Citrullus lanatus HOM05D002214 ORTHO05D007367 9.9e-95 351.3 384 50.3
HPP92_021380 Vanilla planifolia HOM05D002214 ORTHO05D007367 2.9e-94 349.7 413 44.3
ATR0782G063 Amborella trichopoda HOM05D002214 ORTHO05D007367 1.9e-93 347.1 411 47.4
Oeu051405.1 Olea europaea HOM05D002214 ORTHO05D007367 1.1e-90 337.8 313 55.6
FAN24G1013 Fragaria x ananassa HOM05D002214 ORTHO05D007367 4.2e-77 292.7 451 41.2
FvH4_2g17890 Fragaria vesca HOM05D002214 ORTHO05D007367 7.2e-77 292.0 449 41.2
HanXRQChr04g0119861 Helianthus annuus HOM05D002214 ORTHO05D007367 3.6e-76 289.7 283 51.9
SalBow6G2835 Salvia bowleyana HOM05D002214 ORTHO05D007367 4.6e-76 289.3 299 54.8
FAN24G2408 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.6e-73 280.8 449 39.4
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.2e-73 280.4 451 39.7
MELO3C023585.2 Cucumis melo HOM05D002214 ORTHO05D007367 3.7e-73 279.6 399 41.9
QL04p010068 Quercus lobata HOM05D002214 ORTHO05D007367 4.5e-71 272.7 258 55.4
FAN27G1816 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.0e-70 269.2 459 39.0
Aa31LG10G14890 Aethionema arabicum HOM05D002214 ORTHO05D007367 3.2e-69 266.5 199 60.3
Haze_03152 Corylus avellana HOM05D002214 ORTHO05D007367 3.1e-64 250.0 417 39.1
Haze_03149 Corylus avellana HOM05D002214 ORTHO05D007367 1.5e-63 247.7 417 38.8
Cpa.g.sc125.50 Carica papaya HOM05D002214 ORTHO05D007367 6.5e-62 242.3 198 59.1
Hma1.2p1_0685F.1_g203270 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 1.4e-61 241.1 150 74.7
FAN27G1164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.7e-59 232.3 412 40.5
Cpa.g.sc125.51 Carica papaya HOM05D002214 ORTHO05D007367 9.1e-56 221.9 246 48.4
FAN06G2164 Fragaria x ananassa HOM05D002214 ORTHO05D007367 1.2e-55 221.5 230 51.7
Lj9A641T67 Lonicera japonica HOM05D002214 ORTHO05D007367 5.5e-53 212.6 285 42.5
MD07G1016900 Malus domestica HOM05D002214 ORTHO05D007367 7.5e-50 202.2 224 49.1
RcHm_v2.0_Chr6g0283161 Rosa chinensis HOM05D002214 ORTHO05D007367 1.3e-49 201.4 322 40.4
CDE04G0429 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 4.8e-49 199.5 191 49.7
Hund16633 Selenicereus undatus HOM05D002214 ORTHO05D007367 2.2e-46 190.7 152 57.9
FvH4_2g17910 Fragaria vesca HOM05D002214 ORTHO05D007367 6.8e-43 179.1 231 44.6
FAN24G3278 Fragaria x ananassa HOM05D002214 ORTHO05D007367 6.8e-43 179.1 231 44.6
QL04p010120 Quercus lobata HOM05D002214 ORTHO05D007367 6.3e-41 172.6 161 57.8
COL.COLO4_12334 Corchorus olitorius HOM05D000031 ORTHO05D000030 9.1e-40 168.7 314 34.4
FAN06G4994 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.7e-39 167.2 154 55.8
AagrBONN_evm.TU.Sc2ySwM_344.2511 Anthoceros agrestis HOM05D002214 ORTHO05D007367 3.8e-38 163.3 355 31.3
SEGI_30351 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 1.2e-34 151.8 145 51.0
Hma1.2p1_0685F.1_g203250 Hydrangea macrophylla HOM05D002214 ORTHO05D007367 6.3e-33 146.0 122 61.5
Thecc.01G405800 Theobroma cacao HOM05D002214 ORTHO05D007367 1.6e-31 141.4 82 82.9
Oeu016638.1 Olea europaea HOM05D002214 ORTHO05D007367 1.7e-30 137.9 104 64.4
Pp3c8_19810 Physcomitrium patens HOM05D002214 ORTHO05D007367 1.7e-30 137.9 402 24.9
Hund16632 Selenicereus undatus HOM05D002214 ORTHO05D007367 2.9e-30 137.1 133 51.1
Aa31LG10G14900 Aethionema arabicum HOM05D002214 ORTHO05D007367 1.7e-25 121.3 121 48.8
SMO137G0282 Selaginella moellendorffii HOM05D002214 ORTHO05D007367 4.6e-23 113.2 343 28.9
CBR_g46897 Chara braunii HOM05D002214 ORTHO05D007367 2.5e-21 107.5 373 25.2
Lj9C641T18 Lonicera japonica HOM05D002214 ORTHO05D007367 1.3e-17 95.1 109 52.3
Mapoly0009s0234 Marchantia polymorpha HOM05D002214 ORTHO05D007367 4.1e-16 90.1 302 27.5
SEGI_07097 Sequoiadendron giganteum HOM05D002214 ORTHO05D007367 3.3e-13 80.5 132 40.2
FAN27G0150 Fragaria x ananassa HOM05D002214 ORTHO05D007367 8.1e-12 75.9 155 34.8
Thecc.01G405700 Theobroma cacao HOM05D002214 ORTHO05D007367 3.1e-11 73.9 62 56.5
FAN27G0866 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.2e-09 67.8 63 54.0
FAN24G0587 Fragaria x ananassa HOM05D002214 ORTHO05D045595 7.1e-08 62.8 87 42.5
FvH4_6g51280 Fragaria vesca HOM05D004386 ORTHO05D005247 1.7e-06 58.2 214 26.2
FAN24G2079 Fragaria x ananassa HOM05D002214 ORTHO05D007367 2.3e-06 57.8 93 37.6
CDE04G1985 Ceratophyllum demersum HOM05D002214 ORTHO05D007367 5.1e-06 56.6 60 53.3
FAN05G0117 Fragaria x ananassa HOM05D004386 ORTHO05D005247 6.6e-06 56.2 177 25.4


User provided reference genes

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