Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31910 Corchorus olitorius HOM05D002221 ORTHO05D002626 1.2e-36 156.0 77 100.0
Duzib235G0446 Durio zibethinus HOM05D002221 ORTHO05D010139 6.3e-22 107.1 61 78.7
Thecc.06G235900 Theobroma cacao HOM05D002221 ORTHO05D002626 8.5e-19 96.7 57 78.9
Gohir.D06G216600 Gossypium hirsutum HOM05D002221 ORTHO05D002626 1.4e-18 95.9 57 78.9
Gohir.A06G204900 Gossypium hirsutum HOM05D002221 ORTHO05D002626 2.1e-17 92.0 57 77.2
Gorai.010G249600 Gossypium raimondii HOM05D002221 ORTHO05D002626 6.1e-17 90.5 57 75.4
Ciclev10017607m.g Citrus clementina HOM05D002221 ORTHO05D010139 3.7e-14 81.3 59 67.8
TWI38G1144 Tripterygium wilfordii HOM05D002221 ORTHO05D002626 1.4e-13 79.3 57 73.7
TWI63G1235 Tripterygium wilfordii HOM05D002221 ORTHO05D002626 2.4e-13 78.6 54 72.2
QL09p043118 Quercus lobata HOM05D000001 ORTHO05D010139 2.0e-12 75.5 56 62.5
Manes.02G127500 Manihot esculenta HOM05D000001 ORTHO05D010139 3.4e-12 74.7 58 63.8
Atru.chr1.2356 Acer truncatum HOM05D000001 ORTHO05D010139 4.5e-12 74.3 59 64.4
Manes.01G168200 Manihot esculenta HOM05D002221 ORTHO05D002626 1.7e-11 72.4 56 62.5
Lj6g0003849 Lotus japonicus HOM05D002221 ORTHO05D002626 2.9e-11 71.6 50 68.0
vmacro03629 Vaccinium macrocarpon HOM05D002221 ORTHO05D010139 2.9e-11 71.6 55 61.8
Haze_06963 Corylus avellana HOM05D000001 ORTHO05D010139 5.0e-11 70.9 55 61.8
GSVIVG01002055001 Vitis vinifera HOM05D002221 ORTHO05D010139 8.5e-11 70.1 60 61.7
Actinidia02303 Actinidia chinensis HOM05D002221 ORTHO05D002626 1.1e-10 69.7 65 55.4
Cfa000080 Carpinus fangiana HOM05D002221 ORTHO05D010139 1.1e-10 69.7 55 60.0
Rhsim13G0143800 Rhododendron simsii HOM05D002221 ORTHO05D010139 1.1e-10 69.7 52 63.5
CiPaw.09G104400 Carya illinoinensis HOM05D002221 ORTHO05D002626 1.4e-10 69.3 54 63.0
PGSC0003DMG400013288 Solanum tuberosum HOM05D002221 ORTHO05D010139 1.4e-10 69.3 54 66.7
CSS0005625 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010139 2.5e-10 68.6 59 61.0
CSS0021685 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D010139 2.5e-10 68.6 59 61.0
Cpa.g.sc27.255 Carica papaya HOM05D000001 ORTHO05D010139 2.5e-10 68.6 72 55.6
Dinv32069 Davidia involucrata HOM05D000001 ORTHO05D010139 3.2e-10 68.2 53 60.4
Sabra06G0011300 Salix brachista HOM05D002221 ORTHO05D002626 3.2e-10 68.2 53 60.4
Nitab4.5_0000143g0060 Nicotiana tabacum HOM05D002221 ORTHO05D010139 5.5e-10 67.4 65 60.0
Nitab4.5_0002499g0120 Nicotiana tabacum HOM05D002221 ORTHO05D010139 5.5e-10 67.4 65 60.0
MELO3C025541.2 Cucumis melo HOM05D002221 ORTHO05D002626 7.2e-10 67.0 55 61.8
Glyma.09G011500 Glycine max HOM05D002221 ORTHO05D002626 7.2e-10 67.0 48 66.7
CANSAT56G3928 Cannabis sativa HOM05D002221 ORTHO05D002626 9.4e-10 66.6 53 58.5
Glyma.15G116000 Glycine max HOM05D002221 ORTHO05D002626 1.2e-09 66.2 50 64.0
Lj1C1242G3 Lonicera japonica HOM05D000001 ORTHO05D010139 1.2e-09 66.2 41 70.7
QL05p068673 Quercus lobata HOM05D002221 ORTHO05D002626 1.2e-09 66.2 56 62.5
QL05p069039 Quercus lobata HOM05D002221 ORTHO05D002626 1.2e-09 66.2 56 62.5
VMungo0540G0437 Vigna mungo HOM05D002221 ORTHO05D020485 1.6e-09 65.9 47 70.2
Actinidia26846 Actinidia chinensis HOM05D002221 ORTHO05D002626 2.1e-09 65.5 48 64.6
Lalb_Chr20g0119361 Lupinus albus HOM05D002221 ORTHO05D002626 2.1e-09 65.5 45 71.1
Potri.016G009951 Populus trichocarpa HOM05D002221 ORTHO05D002626 2.1e-09 65.5 52 61.5
Sabra16G0013800 Salix brachista HOM05D002221 ORTHO05D010139 3.6e-09 64.7 59 59.3
Sed0016031 Sechium edule HOM05D002221 ORTHO05D002626 3.6e-09 64.7 34 88.2
Potri.006G015800 Populus trichocarpa HOM05D002221 ORTHO05D002626 4.6e-09 64.3 53 58.5
Phvul.006G141900 Phaseolus vulgaris HOM05D002221 ORTHO05D002626 6.1e-09 63.9 45 71.1
SalBow8G4907 Salvia bowleyana HOM05D002221 ORTHO05D010139 6.1e-09 63.9 63 52.4
EL10Ac8g20226 Beta vulgaris HOM05D002221 ORTHO05D010139 7.9e-09 63.5 33 78.8
Cc00_g23600 Coffea canephora HOM05D000001 ORTHO05D020485 7.9e-09 63.5 49 65.3
THA.LOC104814478 Tarenaya hassleriana HOM05D000001 ORTHO05D010139 1.0e-08 63.2 59 52.5
CAN.G696.17 Capsicum annuum HOM05D002221 ORTHO05D002626 1.4e-08 62.8 44 68.2
CsaV3_1G017040 Cucumis sativus L. HOM05D002221 ORTHO05D002626 1.8e-08 62.4 34 82.4
CsaV3_UNG053440 Cucumis sativus L. HOM05D002221 ORTHO05D002626 1.8e-08 62.4 34 82.4
Rhsim04G0039300 Rhododendron simsii HOM05D002221 ORTHO05D002626 1.8e-08 62.4 40 70.0
Sopen11g007220 Solanum pennellii HOM05D002221 ORTHO05D002626 1.8e-08 62.4 46 71.7
Ah.09g234100 Amaranthus hybridus HOM05D002221 ORTHO05D010139 3.0e-08 61.6 58 56.9
arahy.Tifrunner.gnm1.ann1.J0AY6V Arachis hypogaea HOM05D002221 ORTHO05D010139 3.0e-08 61.6 64 53.1
arahy.Tifrunner.gnm1.ann1.LWZP2H Arachis hypogaea HOM05D002221 ORTHO05D010139 3.0e-08 61.6 64 53.1
AUR62021835 Chenopodium quinoa HOM05D002221 ORTHO05D010139 3.0e-08 61.6 51 54.9
Cc05_g00890 Coffea canephora HOM05D002221 ORTHO05D010139 3.0e-08 61.6 45 60.0
HanXRQChr04g0126691 Helianthus annuus HOM05D002221 ORTHO05D002626 3.0e-08 61.6 46 60.9
SGA_v2.0_scaffold7G03727 Striga asiatica HOM05D002221 ORTHO05D010139 3.0e-08 61.6 32 81.2
Carub.0006s2086 Capsella rubella HOM05D002221 ORTHO05D002626 3.9e-08 61.2 60 55.0
ClCG01G010620 Citrullus lanatus HOM05D002221 ORTHO05D002626 3.9e-08 61.2 34 79.4
Prupe.4G007900 Prunus persica HOM05D002221 ORTHO05D002626 3.9e-08 61.2 50 62.0
PGR004G0853 Punica granatum HOM05D002221 ORTHO05D002626 3.9e-08 61.2 54 53.7
Sc17g0007900 Simmondsia chinensis HOM05D000001 ORTHO05D010139 3.9e-08 61.2 42 66.7
Solyc11g012480.3 Solanum lycopersicum HOM05D002221 ORTHO05D002626 3.9e-08 61.2 46 69.6
unitig_32.g11393 Utricularia gibba HOM05D002221 ORTHO05D002626 3.9e-08 61.2 71 49.3
FAN02G0611 Fragaria x ananassa HOM05D002221 ORTHO05D002626 5.1e-08 60.8 61 52.5
HanXRQChr08g0207961 Helianthus annuus HOM05D002221 ORTHO05D002626 5.1e-08 60.8 32 87.5
ECA236G1538 Erigeron canadensis HOM05D002221 ORTHO05D002626 6.7e-08 60.5 38 71.1
Lsat_1_v5_gn_7_96100 Lactuca sativa HOM05D002221 ORTHO05D002626 6.7e-08 60.5 37 73.0
Nn1g02978 Nelumbo nucifera HOM05D002221 ORTHO05D002626 6.7e-08 60.5 35 77.1
Migut.M01418 Erythranthe guttata HOM05D002221 ORTHO05D002626 8.8e-08 60.1 69 49.3
Nn1g03259 Nelumbo nucifera HOM05D002221 ORTHO05D002626 8.8e-08 60.1 59 54.2
HanXRQChr11g0328161 Helianthus annuus HOM05D002221 ORTHO05D002626 1.1e-07 59.7 33 78.8
RcHm_v2.0_Chr2g0156811 Rosa chinensis HOM05D002221 ORTHO05D002626 1.1e-07 59.7 55 58.2
vmacro09393 Vaccinium macrocarpon HOM05D002221 ORTHO05D002626 1.1e-07 59.7 40 65.0
Actinidia09774 Actinidia chinensis HOM05D002221 ORTHO05D002626 1.5e-07 59.3 37 73.0
A03p46440 Brassica napus HOM05D002221 ORTHO05D002626 1.5e-07 59.3 52 53.8
QL08p028790 Quercus lobata HOM05D002221 ORTHO05D002626 1.5e-07 59.3 38 68.4
SGA_v2.0_scaffold4G01860 Striga asiatica HOM05D002221 ORTHO05D002626 1.5e-07 59.3 57 56.1
C09p07930 Brassica napus HOM05D002221 ORTHO05D002626 2.0e-07 58.9 48 60.4
Lsat_1_v5_gn_0_32461 Lactuca sativa HOM05D002221 ORTHO05D009499 2.0e-07 58.9 49 59.2
MBI16_g11549_MAGBIO Magnolia biondii HOM05D002221 ORTHO05D010139 2.0e-07 58.9 36 72.2
Cc00_g16890 Coffea canephora HOM05D002221 ORTHO05D020485 2.6e-07 58.5 32 78.1
Manes.12G062301 Manihot esculenta HOM05D002221 ORTHO05D002626 2.6e-07 58.5 40 65.0
MSTRG.7153 Avicennia marina HOM05D002221 ORTHO05D002626 3.3e-07 58.2 56 51.8
CSS0000293 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 3.3e-07 58.2 35 71.4
CSS0020136 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 3.3e-07 58.2 35 71.4
CiPaw.10G079400 Carya illinoinensis HOM05D002737 ORTHO05D009499 3.3e-07 58.2 64 51.6
FAN05G3400 Fragaria x ananassa HOM05D002221 ORTHO05D002626 3.3e-07 58.2 55 54.5
CSS0003824 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 4.4e-07 57.8 35 77.1
CSS0006770 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 4.4e-07 57.8 35 71.4
PGR042G3580 Punica granatum HOM05D002221 ORTHO05D002626 4.4e-07 57.8 33 81.8
Solyc11g065760.2 Solanum lycopersicum HOM05D002221 ORTHO05D002626 4.4e-07 57.8 42 61.9
Sopen11g025530 Solanum pennellii HOM05D002221 ORTHO05D002626 4.4e-07 57.8 42 61.9
TAR624G0610 Trochodendron aralioides HOM05D002221 ORTHO05D002626 4.4e-07 57.8 62 51.6
TAR626G0475 Trochodendron aralioides HOM05D002221 ORTHO05D002626 4.4e-07 57.8 39 74.4
DCAR_021108 Daucus carota HOM05D002221 ORTHO05D002626 5.7e-07 57.4 32 75.0
FvH4_6g41260 Fragaria vesca HOM05D002221 ORTHO05D002626 5.7e-07 57.4 61 50.8
FAN14G4958 Fragaria x ananassa HOM05D002221 ORTHO05D002626 5.7e-07 57.4 61 50.8
FAN21G1606 Fragaria x ananassa HOM05D002221 ORTHO05D010139 5.7e-07 57.4 39 64.1
FAN25G1468 Fragaria x ananassa HOM05D002221 ORTHO05D002626 5.7e-07 57.4 39 64.1
RcHm_v2.0_Chr5g0000951 Rosa chinensis HOM05D002221 ORTHO05D002626 5.7e-07 57.4 45 57.8
Sed0012115 Sechium edule HOM05D002221 ORTHO05D002626 5.7e-07 57.4 38 65.8
Zm00001eb021070 Zea mays HOM05D002221 ORTHO05D002626 5.7e-07 57.4 30 83.3
Aqoxy1G04013 Aquilegia oxysepala HOM05D002221 ORTHO05D002626 7.4e-07 57.0 30 86.7
EL10Ac9g22740 Beta vulgaris HOM05D002221 ORTHO05D002626 7.4e-07 57.0 30 83.3
C07p44460 Brassica napus HOM05D002221 ORTHO05D002626 7.4e-07 57.0 50 54.0
BolC7t44967H Brassica oleracea HOM05D002221 ORTHO05D002626 7.4e-07 57.0 50 54.0
Ca_00740_v3 Cicer arietinum L. HOM05D002221 ORTHO05D002626 7.4e-07 57.0 56 51.8
MD10G1335800 Malus domestica HOM05D002221 ORTHO05D002626 7.4e-07 57.0 49 55.1
Dinv05840 Davidia involucrata HOM05D002221 ORTHO05D002626 9.7e-07 56.6 35 71.4
Nitab4.5_0001587g0110 Nicotiana tabacum HOM05D002221 ORTHO05D002626 9.7e-07 56.6 38 63.2
Nitab4.5_0007133g0030 Nicotiana tabacum HOM05D002221 ORTHO05D002626 9.7e-07 56.6 38 65.8
Peaxi162Scf00004g02331 Petunia axillaris HOM05D002221 ORTHO05D002626 9.7e-07 56.6 32 75.0
arahy.Tifrunner.gnm1.ann1.DY6AJ3 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.3e-06 56.2 32 78.1
arahy.Tifrunner.gnm1.ann1.E5VA16 Arachis hypogaea HOM05D002221 ORTHO05D002626 1.3e-06 56.2 32 78.1
CANSAT64G0524 Cannabis sativa HOM05D002221 ORTHO05D002626 1.3e-06 56.2 30 80.0
AUR62015071 Chenopodium quinoa HOM05D002221 ORTHO05D002626 1.3e-06 56.2 36 63.9
CsaV3_6G009390 Cucumis sativus L. HOM05D002221 ORTHO05D002626 1.3e-06 56.2 51 54.9
Eucgr.D01432 Eucalyptus grandis HOM05D002221 ORTHO05D002626 1.3e-06 56.2 34 76.5
FAN09G1924 Fragaria x ananassa HOM05D002221 ORTHO05D002626 1.3e-06 56.2 55 52.7
Psat5g101320 Pisum sativum HOM05D002221 ORTHO05D002626 1.3e-06 56.2 39 69.2
Rhsim06G0173700 Rhododendron simsii HOM05D002221 ORTHO05D002626 1.3e-06 56.2 30 83.3
Actinidia21448 Actinidia chinensis HOM05D002221 ORTHO05D002626 1.7e-06 55.8 41 58.5
AT5G23070 Arabidopsis thaliana HOM05D002221 ORTHO05D002626 1.7e-06 55.8 46 63.0
arahy.Tifrunner.gnm1.ann1.Q8BPMD Arachis hypogaea HOM05D002221 ORTHO05D002626 1.7e-06 55.8 32 78.1
Thhalv10026841m.g Eutrema salsugineum HOM05D000001 ORTHO05D010139 1.7e-06 55.8 46 58.7
Thhalv10026937m.g Eutrema salsugineum HOM05D000001 ORTHO05D010139 1.7e-06 55.8 46 58.7
Thhalv10027220m.g Eutrema salsugineum HOM05D000001 ORTHO05D010139 1.7e-06 55.8 46 58.7
Manes.13G064000 Manihot esculenta HOM05D002221 ORTHO05D002626 1.7e-06 55.8 34 70.6
Medtr3g083230 Medicago truncatula HOM05D002221 ORTHO05D002626 1.7e-06 55.8 38 65.8
Potri.002G222300 Populus trichocarpa HOM05D002221 ORTHO05D002626 1.7e-06 55.8 40 67.5
Prupe.3G202500 Prunus persica HOM05D002221 ORTHO05D002626 1.7e-06 55.8 57 56.1
Actinidia07881 Actinidia chinensis HOM05D002221 ORTHO05D002626 2.2e-06 55.5 32 75.0
BraA03t13770Z Brassica rapa HOM05D002221 ORTHO05D002626 2.2e-06 55.5 40 60.0
CDE04G0937 Ceratophyllum demersum HOM05D002221 ORTHO05D002626 2.2e-06 55.5 49 55.1
AUR62017527 Chenopodium quinoa HOM05D002221 ORTHO05D002626 2.2e-06 55.5 30 76.7
Ciclev10016471m.g Citrus clementina HOM05D002221 ORTHO05D002626 2.2e-06 55.5 30 80.0
Dinv07854 Davidia involucrata HOM05D002221 ORTHO05D002626 2.2e-06 55.5 30 80.0
MD09G1121200 Malus domestica HOM05D002221 ORTHO05D002626 2.2e-06 55.5 37 67.6
MD10G1258800 Malus domestica HOM05D002221 ORTHO05D002626 2.2e-06 55.5 37 64.9
Hund21146 Selenicereus undatus HOM05D002221 ORTHO05D002626 2.2e-06 55.5 30 83.3
Thecc.01G189400 Theobroma cacao HOM05D002221 ORTHO05D002626 2.2e-06 55.5 38 68.4
CDE07G1288 Ceratophyllum demersum HOM05D002221 ORTHO05D002626 2.8e-06 55.1 42 57.1
ClCG02G009420 Citrullus lanatus HOM05D002221 ORTHO05D002626 2.8e-06 55.1 30 80.0
Duzib138G0880 Durio zibethinus HOM05D002221 ORTHO05D002626 2.8e-06 55.1 30 80.0
Gohir.A11G150400 Gossypium hirsutum HOM05D002221 ORTHO05D002626 2.8e-06 55.1 30 76.7
Gorai.007G167400 Gossypium raimondii HOM05D002221 ORTHO05D002626 2.8e-06 55.1 30 76.7
Sabra14G0123100 Salix brachista HOM05D002221 ORTHO05D002626 2.8e-06 55.1 40 62.5
Cfa014250 Carpinus fangiana HOM05D002221 ORTHO05D002626 3.7e-06 54.7 30 80.0
Haze_12699 Corylus avellana HOM05D002221 ORTHO05D002626 3.7e-06 54.7 30 80.0
FvH4_3g00700 Fragaria vesca HOM05D002221 ORTHO05D002626 3.7e-06 54.7 36 66.7
FvH4_5g30410 Fragaria vesca HOM05D002221 ORTHO05D002626 3.7e-06 54.7 38 60.5
FAN18G4113 Fragaria x ananassa HOM05D002221 ORTHO05D002626 3.7e-06 54.7 38 60.5
Lalb_Chr24g0402701 Lupinus albus HOM05D002221 ORTHO05D002626 3.7e-06 54.7 30 83.3
Sed0010569 Sechium edule HOM05D002221 ORTHO05D002626 3.7e-06 54.7 30 80.0
TAR629G1692 Trochodendron aralioides HOM05D002221 ORTHO05D002626 3.7e-06 54.7 47 57.4
ATR1149G007 Amborella trichopoda HOM05D002221 ORTHO05D002626 4.8e-06 54.3 39 61.5
CARHR190460 Cardamine hirsuta HOM05D002221 ORTHO05D002626 4.8e-06 54.3 56 53.6
PSO541G4666 Papaver somniferum HOM05D002221 ORTHO05D002626 4.8e-06 54.3 62 50.0
Sp2g24050 Schrenkiella parvula HOM05D002221 ORTHO05D002626 4.8e-06 54.3 44 56.8
TWI75G1127 Tripterygium wilfordii HOM05D002221 ORTHO05D002626 4.8e-06 54.3 30 80.0
AL6G34260 Arabidopsis lyrata HOM05D002221 ORTHO05D002626 6.3e-06 53.9 50 52.0
Eucgr.A01057 Eucalyptus grandis HOM05D002221 ORTHO05D002626 6.3e-06 53.9 30 76.7
Gohir.D11G156900 Gossypium hirsutum HOM05D002221 ORTHO05D002626 6.3e-06 53.9 30 76.7
TPR.G19334 Trifolium pratense HOM05D002221 ORTHO05D002626 6.3e-06 53.9 35 68.6
VMungo0540G2162 Vigna mungo HOM05D002221 ORTHO05D002626 6.3e-06 53.9 42 61.9
MSTRG.6650 Avicennia marina HOM05D002221 ORTHO05D002626 8.2e-06 53.5 30 76.7
Ca_16366_v3 Cicer arietinum L. HOM05D002221 ORTHO05D002626 8.2e-06 53.5 40 60.0
Lj8A133T58 Lonicera japonica HOM05D002221 ORTHO05D002626 8.2e-06 53.5 30 73.3
SalBow7G4136 Salvia bowleyana HOM05D002221 ORTHO05D002626 8.2e-06 53.5 30 80.0
PGSC0003DMG402007356 Solanum tuberosum HOM05D002221 ORTHO05D002626 8.2e-06 53.5 30 76.7


User provided reference genes

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