Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 1.1e-190 669.8 339 100.0
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 6.5e-172 607.4 339 89.1
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 6.7e-169 597.4 339 87.6
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 2.6e-168 595.5 339 87.6
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 4.4e-168 594.7 339 87.6
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 5.7e-168 594.3 331 88.5
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 2.7e-141 505.8 335 73.1
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 2.0e-136 489.6 344 72.7
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 9.8e-136 487.3 345 71.0
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 5.4e-134 481.5 336 71.1
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 1.2e-133 480.3 340 73.2
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 2.0e-133 479.6 336 67.9
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 2.0e-133 479.6 339 69.9
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 4.5e-133 478.4 335 69.9
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 5.9e-133 478.0 335 70.7
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 2.3e-132 476.1 333 70.9
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 5.0e-132 474.9 338 71.3
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 8.6e-132 474.2 345 69.3
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 1.1e-131 473.8 335 70.1
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 1.9e-131 473.0 340 68.2
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 2.5e-131 472.6 335 69.3
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 4.3e-131 471.9 335 71.3
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 9.5e-131 470.7 337 70.3
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 9.5e-131 470.7 336 70.8
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 9.5e-131 470.7 319 71.5
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.6e-130 469.9 338 71.3
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 2.1e-130 469.5 337 69.1
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 2.8e-130 469.2 343 68.8
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 1.0e-129 467.2 338 67.2
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 1.4e-129 466.8 340 67.9
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 3.0e-129 465.7 338 67.2
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 4.0e-129 465.3 343 67.3
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 5.2e-129 464.9 339 67.6
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 5.2e-129 464.9 341 66.9
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 5.2e-129 464.9 340 67.4
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 5.2e-129 464.9 341 66.6
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 8.9e-129 464.2 340 67.4
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-128 463.8 330 69.7
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.2e-128 463.8 341 67.4
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 2.6e-128 462.6 340 67.1
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 3.4e-128 462.2 339 68.1
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 9.8e-128 460.7 333 68.2
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 3.7e-127 458.8 335 67.8
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.9e-126 456.4 337 66.8
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.9e-126 456.4 337 66.8
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 2.4e-126 456.1 340 66.5
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 2.0e-125 453.0 325 68.3
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 3.9e-124 448.7 369 62.1
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 8.6e-124 447.6 342 65.2
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 1.5e-123 446.8 337 65.3
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.3e-123 445.7 342 65.5
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 7.3e-123 444.5 342 65.2
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 9.5e-123 444.1 342 65.2
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 9.5e-123 444.1 342 65.2
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 2.8e-122 442.6 342 64.9
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 5.2e-121 438.3 341 65.4
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 3.4e-120 435.6 334 65.3
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 5.8e-120 434.9 330 65.5
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.8e-120 434.9 329 65.7
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 6.4e-119 431.4 341 64.5
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.1e-118 430.6 337 64.4
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 2.4e-118 429.5 342 64.3
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 3.2e-118 429.1 339 63.4
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 9.2e-118 427.6 320 64.7
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.3e-116 423.7 323 64.4
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.3e-116 423.7 330 66.4
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 2.3e-116 422.9 334 63.5
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 5.0e-116 421.8 337 64.4
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 5.0e-116 421.8 340 62.9
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 6.6e-116 421.4 319 64.6
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 6.6e-116 421.4 340 62.9
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 8.6e-116 421.0 331 62.5
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.5e-115 420.2 337 61.7
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 2.5e-115 419.5 331 63.4
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 2.5e-115 419.5 333 63.4
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 2.5e-115 419.5 340 62.4
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 3.3e-115 419.1 339 61.9
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 4.3e-115 418.7 331 64.0
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 4.3e-115 418.7 340 62.9
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 4.3e-115 418.7 325 63.7
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 1.2e-114 417.2 317 66.6
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 2.1e-114 416.4 319 64.3
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.8e-114 416.0 329 62.9
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 3.6e-114 415.6 342 63.2
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 3.6e-114 415.6 336 62.5
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.4e-113 413.7 334 64.1
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 1.8e-113 413.3 339 61.7
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 2.3e-113 412.9 340 62.6
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 3.4e-112 409.1 327 62.1
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 7.5e-112 407.9 340 60.9
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 4.9e-111 405.2 318 63.5
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 8.3e-111 404.4 338 60.4
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 2.1e-109 399.8 340 60.0
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 3.0e-108 396.0 333 58.9
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 3.0e-108 396.0 333 58.9
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 9.5e-107 391.0 333 61.0
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 1.2e-106 390.6 340 59.4
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 2.1e-106 389.8 352 57.7
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 2.8e-106 389.4 329 61.1
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 2.8e-106 389.4 344 58.4
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 3.6e-106 389.0 333 60.1
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 2.2e-103 379.8 342 58.2
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 2.4e-102 376.3 323 57.9
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.6e-101 373.6 322 58.1
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 6.0e-101 371.7 262 67.6
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.7e-100 370.2 319 58.0
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 3.0e-100 369.4 284 62.3
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 5.6e-99 365.2 317 56.2
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 1.4e-94 350.5 326 57.4
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 3.5e-85 319.3 252 62.7
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 2.3e-84 316.6 328 52.1
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 5.1e-84 315.5 321 48.0
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 1.8e-73 280.4 343 44.6
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 8.7e-68 261.5 349 40.7
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 1.9e-62 243.8 251 53.4
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 4.2e-62 242.7 175 69.1
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 7.2e-62 241.9 175 69.1
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 7.4e-59 231.9 229 51.1
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 2.2e-55 220.3 176 61.4
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 5.5e-54 215.7 323 38.4
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 2.0e-51 207.2 149 65.8
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 4.5e-48 196.1 142 71.8
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 2.1e-45 187.2 161 59.6
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 1.5e-43 181.0 325 32.6
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 1.4e-41 174.5 131 65.6
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 1.9e-38 164.1 120 69.2
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 5.2e-36 156.0 115 67.0
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 6.7e-36 155.6 100 75.0
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 4.4e-35 152.9 119 65.5
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 1.3e-34 151.4 100 73.0
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 1.3e-34 151.4 100 72.0
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 2.8e-34 150.2 100 72.0
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 8.3e-34 148.7 117 65.0
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 8.3e-34 148.7 126 57.1
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 7.0e-33 145.6 97 68.0
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.7e-31 141.0 220 39.5
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 8.0e-29 132.1 287 31.0
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 8.0e-29 132.1 340 27.6
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 6.8e-28 129.0 85 74.1
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 6.8e-28 129.0 85 74.1
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 2.0e-27 127.5 171 40.9
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.6e-27 127.1 161 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 2.4e-25 120.6 171 40.9
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.1e-22 111.7 138 48.6
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 4.2e-22 109.8 291 29.6
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 4.2e-22 109.8 140 45.7
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 1.4e-20 104.8 135 45.9
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 8.9e-20 102.1 113 46.0
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 1.1e-14 85.1 98 42.9
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 1.2e-13 81.6 80 60.0
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 1.8e-12 77.8 48 75.0
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 7.0e-09 65.9 127 37.8
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 1.2e-08 65.1 40 80.0
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 5.0e-07 59.7 40 67.5


User provided reference genes

Program Settings