Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 7.1e-296 1020.0 576 100.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 3.0e-270 934.9 579 90.0
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 4.8e-268 927.5 579 90.3
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 9.4e-264 913.3 529 91.7
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.7e-263 911.8 577 89.3
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.3e-259 897.5 528 89.2
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.5e-258 894.8 528 88.8
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.2e-250 869.8 528 87.7
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.5e-245 852.8 526 85.2
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.1e-231 805.8 480 89.0
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 6.2e-215 751.1 587 75.5
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 8.1e-215 750.7 589 74.7
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.4e-211 740.0 589 74.2
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 3.2e-211 738.8 524 72.5
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 7.3e-208 727.6 585 74.5
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 7.3e-208 727.6 589 74.4
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 9.5e-208 727.2 585 74.5
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 9.5e-208 727.2 591 73.4
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 4.0e-206 721.8 585 73.0
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 6.8e-206 721.1 590 73.2
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 1.2e-205 720.3 589 71.3
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.5e-205 719.9 517 74.1
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.6e-205 719.2 517 73.7
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 5.8e-205 718.0 539 70.5
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 7.6e-205 717.6 585 73.8
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 6.4e-204 714.5 531 72.3
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.1e-203 713.8 515 73.4
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 4.2e-203 711.8 536 70.1
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.6e-202 709.9 587 73.1
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 1.6e-202 709.9 524 70.2
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 6.0e-202 708.0 525 71.0
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 1.0e-201 707.2 592 70.9
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.7e-201 706.4 534 69.7
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 3.9e-201 705.3 512 73.6
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 7.3e-200 701.0 514 71.8
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 3.6e-199 698.7 587 71.4
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 1.1e-198 697.2 516 71.7
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 6.9e-198 694.5 527 70.4
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.4e-197 692.2 590 71.0
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.1e-195 687.2 533 70.7
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 4.2e-195 685.3 539 68.1
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 9.3e-195 684.1 523 70.7
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.6e-194 683.3 543 70.5
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 6.0e-194 681.4 526 70.0
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 7.8e-194 681.0 525 69.3
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 1.3e-193 680.2 532 70.3
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 5.6e-192 674.9 523 71.9
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 7.3e-192 674.5 523 71.7
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 1.8e-190 669.8 537 68.7
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 5.3e-190 668.3 524 71.4
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 5.3e-190 668.3 520 70.4
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 6.9e-190 667.9 534 67.6
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.5e-189 666.8 444 75.5
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 5.8e-189 664.8 518 70.5
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 7.6e-189 664.5 444 75.9
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.3e-188 663.7 537 68.2
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 2.9e-188 662.5 523 69.2
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 1.0e-185 654.1 634 64.2
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 2.3e-185 652.9 422 76.1
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.1e-184 650.6 516 69.2
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 1.5e-184 650.2 536 67.4
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 2.5e-184 649.4 510 68.0
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 4.3e-184 648.7 537 68.0
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 4.3e-184 648.7 516 67.2
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 8.1e-183 644.4 516 66.9
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 1.1e-182 644.0 442 74.0
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 2.6e-181 639.4 419 74.9
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.9e-180 636.0 548 63.9
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 2.5e-179 632.9 577 67.1
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.2e-179 632.5 398 78.6
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.0e-177 627.5 523 68.1
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.3e-175 620.5 444 72.1
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 8.2e-175 617.8 523 66.2
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 3.1e-174 615.9 449 72.2
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 7.6e-173 611.3 545 61.8
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.3e-172 610.5 525 62.9
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 5.5e-171 605.1 524 63.4
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 7.1e-171 604.7 496 64.9
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.2e-170 604.0 434 68.9
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 3.5e-170 602.4 520 63.1
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.0e-169 599.4 393 74.3
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 3.9e-169 599.0 421 70.5
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.1e-168 597.4 520 64.8
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.8e-167 592.8 470 65.7
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 1.8e-166 590.1 483 65.6
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 5.3e-166 588.6 461 65.3
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 6.9e-166 588.2 534 62.4
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 4.5e-165 585.5 516 61.4
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 2.9e-164 582.8 529 62.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 5.0e-164 582.0 444 68.0
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 6.7e-161 571.6 517 60.3
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 3.3e-160 569.3 495 62.2
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.4e-158 563.9 518 63.3
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.6e-157 559.7 387 71.1
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 5.9e-157 558.5 452 66.4
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 2.9e-156 556.2 524 59.0
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 6.5e-156 555.1 522 62.3
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 3.2e-155 552.7 483 65.0
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.6e-154 550.4 536 58.0
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.6e-154 550.4 479 63.7
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 2.3e-153 546.6 537 56.2
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.8e-150 537.0 513 58.3
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 5.3e-150 535.4 514 60.3
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 1.1e-147 527.7 521 57.2
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 3.3e-144 516.2 520 56.3
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.1e-142 511.1 450 61.8
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 5.9e-141 505.4 490 57.3
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 6.8e-137 491.9 447 70.5
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 2.6e-136 490.0 425 60.9
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 5.0e-132 475.7 378 65.1
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.6e-130 470.7 441 58.0
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 2.2e-119 433.7 423 65.2
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 7.0e-118 428.7 328 66.2
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 3.4e-112 409.8 358 59.2
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 9.8e-112 408.3 457 50.1
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.9e-108 396.4 353 60.9
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 6.6e-108 395.6 435 51.7
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 3.6e-106 389.8 356 57.3
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.2e-104 384.8 413 50.1
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.2e-104 384.8 449 49.7
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.7e-95 354.4 301 67.4
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.1e-93 347.4 213 79.8
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 2.7e-93 347.1 537 46.6
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.7e-92 344.4 273 72.9
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 5.8e-88 329.3 210 75.2
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 4.2e-78 296.6 496 41.7
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.6e-77 294.7 369 47.4
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.1e-74 284.3 397 45.6
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 5.3e-73 279.6 187 74.3
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 9.3e-54 215.7 192 57.3
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 5.9e-48 196.4 202 50.5
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 7.2e-46 189.5 171 57.9
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.7e-42 178.3 518 29.3
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 6.9e-41 172.9 183 61.2
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.9e-31 141.0 120 60.8
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 2.3e-28 131.3 108 63.0
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 8.8e-28 129.4 108 61.1
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 1.4e-25 122.1 95 65.3
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.3e-23 115.5 87 66.7
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 2.9e-23 114.4 235 34.5
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 3.6e-21 107.5 354 26.8
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 5.7e-19 100.1 144 59.7
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 3.7e-18 97.4 120 51.7
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.3e-15 89.0 160 38.1
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 2.2e-15 88.2 109 61.5
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.1e-14 85.9 126 41.3
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.2e-13 82.4 106 48.1
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 1.3e-10 72.4 118 39.0
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 1.7e-10 72.0 117 41.9
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 2.7e-08 64.7 44 70.5
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 6.6e-07 60.1 141 33.3
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 5.6e-06 57.0 61 52.5


User provided reference genes

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