Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 1.6e-288 995.3 480 100.0
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.2e-261 906.0 568 79.9
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 3.5e-256 887.9 568 77.6
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 4.5e-251 870.9 565 76.8
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.3e-250 869.4 565 76.6
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 3.8e-250 867.8 565 76.6
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 3.7e-245 851.3 569 74.9
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 4.5e-243 844.3 568 74.3
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 2.2e-242 842.0 567 74.3
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 2.2e-242 842.0 568 73.8
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 4.9e-242 840.9 566 74.2
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 6.4e-242 840.5 566 74.0
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 2.5e-241 838.6 570 74.0
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 3.2e-241 838.2 568 73.6
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 6.0e-240 833.9 569 73.3
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 6.0e-240 833.9 574 73.2
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 1.0e-239 833.2 565 73.6
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-239 832.8 565 73.6
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 1.8e-239 832.4 568 73.1
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 1.8e-239 832.4 569 73.1
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.8e-239 832.4 564 73.6
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 2.3e-239 832.0 572 73.1
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 3.0e-239 831.6 565 73.6
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 5.1e-239 830.9 565 73.6
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 5.1e-239 830.9 569 72.8
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.5e-238 828.6 569 72.6
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 4.3e-238 827.8 525 78.1
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 4.3e-238 827.8 565 73.5
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 5.6e-238 827.4 568 72.4
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 5.6e-238 827.4 569 71.7
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 9.6e-238 826.6 566 71.4
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 1.3e-237 826.2 566 72.8
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.1e-237 825.5 569 72.8
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 2.8e-237 825.1 557 73.4
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.7e-237 824.7 569 72.1
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.8e-237 824.3 569 72.1
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.1e-236 823.2 549 74.9
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 1.8e-236 822.4 567 73.0
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 4.0e-236 821.2 571 72.0
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 9.0e-236 820.1 592 70.3
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 2.6e-235 818.5 552 73.9
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 7.6e-235 817.0 574 72.0
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.0e-234 816.6 600 69.8
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.7e-234 815.8 566 72.6
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 2.2e-234 815.5 573 71.7
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 6.5e-234 813.9 565 72.7
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 6.5e-234 813.9 574 71.1
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.4e-233 812.8 549 74.0
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.4e-233 812.8 549 73.4
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 7.1e-233 810.4 549 73.8
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 1.2e-232 809.7 549 73.2
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.2e-232 809.7 560 72.0
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 2.7e-232 808.5 549 73.2
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 7.9e-232 807.0 549 73.0
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 7.9e-232 807.0 549 73.4
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 6.7e-231 803.9 553 72.9
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.5e-230 802.7 570 70.4
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.9e-230 802.4 549 73.0
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 2.5e-230 802.0 568 70.8
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 4.1e-228 794.7 552 70.8
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.1e-228 794.7 568 71.0
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 1.2e-227 793.1 569 70.1
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 3.4e-227 791.6 552 70.7
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 3.4e-227 791.6 567 70.0
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 3.4e-227 791.6 569 70.1
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 5.9e-227 790.8 566 70.1
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 7.7e-227 790.4 571 69.0
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 3.8e-226 788.1 551 71.5
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 5.5e-225 784.3 553 70.7
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 7.2e-225 783.9 552 69.9
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.2e-224 783.1 551 70.4
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 3.6e-224 781.6 552 69.9
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.4e-223 779.6 552 69.6
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.3e-223 778.9 558 69.5
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.0e-223 778.5 568 69.4
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 2.0e-222 775.8 546 70.1
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 2.5e-222 775.4 552 69.6
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 3.3e-222 775.0 552 69.4
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 7.4e-222 773.9 552 68.8
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 9.7e-222 773.5 560 68.2
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.3e-221 773.1 552 69.2
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 2.2e-221 772.3 560 68.2
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 2.2e-221 772.3 558 69.0
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.8e-220 769.2 565 66.9
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 1.8e-220 769.2 559 70.3
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 4.1e-220 768.1 551 70.1
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 5.3e-220 767.7 546 69.8
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 7.7e-219 763.8 555 69.4
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 1.3e-218 763.1 553 68.7
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 1.7e-218 762.7 548 71.7
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 9.4e-217 756.9 529 72.6
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.6e-216 756.1 564 67.2
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 2.3e-215 752.3 552 68.7
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 5.7e-214 747.7 557 66.6
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 9.7e-214 746.9 552 67.8
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.1e-212 741.9 560 67.3
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 7.0e-212 740.7 542 69.0
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 7.7e-211 737.3 543 68.7
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.3e-206 721.8 564 66.3
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.1e-200 702.6 546 63.6
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 1.8e-199 699.5 569 63.6
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 2.2e-197 692.6 494 70.2
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 3.1e-196 688.7 546 62.6
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.3e-196 688.0 539 64.7
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 9.1e-196 687.2 539 64.6
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.9e-194 682.2 549 62.5
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 4.2e-193 678.3 547 63.1
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 6.1e-192 674.5 558 63.8
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 5.2e-191 671.4 543 62.2
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 1.7e-186 656.4 571 62.0
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 1.9e-185 652.9 547 61.6
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 3.4e-182 642.1 548 60.2
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 2.3e-178 629.4 455 71.0
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 6.6e-178 627.9 506 63.2
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.8e-175 619.8 541 58.8
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 4.3e-169 598.6 424 71.0
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 7.3e-169 597.8 535 56.6
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 8.9e-167 590.9 545 55.4
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 9.8e-166 587.4 423 71.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 2.1e-163 579.7 535 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.5e-161 573.5 536 54.7
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 2.3e-154 549.7 296 88.2
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.3e-153 545.8 539 54.7
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.3e-153 545.8 539 54.7
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 4.7e-152 542.0 292 88.0
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.2e-150 537.3 296 85.5
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.6e-144 516.9 501 57.5
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 6.7e-130 468.4 352 66.2
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 3.5e-115 419.5 283 74.9
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 1.3e-101 374.4 544 40.6
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.8e-96 356.7 451 46.6
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 8.8e-82 308.5 180 80.6
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 1.2e-67 261.5 139 90.6
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 7.8e-62 242.3 133 87.2
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 2.8e-59 233.8 165 66.7
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.9e-55 221.1 127 82.7
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 9.2e-55 218.8 137 75.2
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 1.2e-54 218.4 129 79.1
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 3.3e-52 210.3 127 77.2
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 3.3e-52 210.3 127 77.2
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.6e-51 206.8 126 77.0
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.7e-48 198.0 120 75.8
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.7e-48 198.0 120 75.8
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.9e-47 194.5 119 75.6
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.9e-47 194.5 119 75.6
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 3.2e-47 193.7 107 85.0
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.1e-36 158.7 76 92.1
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 7.6e-33 146.0 79 88.6
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.0e-26 123.6 86 68.6
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 2.0e-25 121.3 338 29.6
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.4e-25 120.6 81 67.9
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 7.6e-25 119.4 124 46.8
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 3.2e-23 114.0 121 50.4
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.3e-21 108.6 60 80.0
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 1.3e-19 102.1 63 76.2
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 2.2e-16 91.3 54 72.2
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 6.7e-13 79.7 228 29.8
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 2.9e-08 64.3 40 72.5


User provided reference genes

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