Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_27076 Corchorus olitorius HOM05D005876 ORTHO05D007326 2.0e-44 182.2 100 100.0
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 1.7e-35 152.5 102 86.3
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 1.5e-20 102.8 109 58.7
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 1.7e-19 99.4 108 59.3
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 6.4e-19 97.4 96 62.5
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 6.2e-14 80.9 102 52.0
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 2.4e-13 79.0 102 51.0
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 2.4e-13 79.0 102 53.9
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 9.3e-10 67.0 111 45.0
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 2.1e-09 65.9 111 44.1
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 2.1e-09 65.9 113 42.5
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 6.0e-09 64.3 113 39.8
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 6.0e-09 64.3 111 44.1
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 7.9e-09 63.9 91 47.3
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 1.0e-08 63.5 111 44.1
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 1.3e-08 63.2 112 40.2
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 3.0e-08 62.0 111 41.4
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 3.0e-08 62.0 111 40.5
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 8.7e-08 60.5 103 39.8
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.1e-07 60.1 103 40.8
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.5e-07 59.7 98 39.8
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 1.9e-07 59.3 113 38.9
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 5.7e-07 57.8 96 43.8
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 5.7e-07 57.8 98 39.8
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 7.4e-07 57.4 105 44.8
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 9.6e-07 57.0 88 40.9
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 9.6e-07 57.0 99 44.4
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.6e-06 56.2 118 37.3
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 2.1e-06 55.8 99 43.4
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 2.1e-06 55.8 118 38.1
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 2.1e-06 55.8 118 38.1
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 2.8e-06 55.5 93 43.0
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 3.7e-06 55.1 93 44.1
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 4.8e-06 54.7 101 43.6
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 6.2e-06 54.3 123 41.5
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 6.2e-06 54.3 105 40.0
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 8.2e-06 53.9 102 42.2
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 8.2e-06 53.9 116 39.7


User provided reference genes

Program Settings