Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 3.7e-301 1037.3 500 100.0
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 7.1e-260 900.2 504 86.5
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 8.5e-245 850.1 477 85.5
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 6.7e-242 840.5 477 84.3
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 2.2e-224 782.3 469 80.4
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 6.5e-221 770.8 453 80.6
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 3.2e-220 768.5 448 80.6
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 6.1e-219 764.2 463 77.3
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 2.6e-217 758.8 481 76.5
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 3.4e-217 758.4 483 77.0
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 3.4e-217 758.4 427 83.1
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 1.7e-216 756.1 456 79.6
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 1.7e-216 756.1 463 77.8
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 4.8e-216 754.6 491 74.7
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 8.3e-216 753.8 505 72.7
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 2.4e-215 752.3 483 76.4
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 4.1e-215 751.5 507 72.8
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 7.0e-215 750.7 467 77.5
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 7.0e-215 750.7 472 77.3
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 9.1e-215 750.4 477 75.5
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 9.1e-215 750.4 494 75.9
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 1.2e-214 750.0 444 79.3
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 1.3e-213 746.5 432 80.8
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 6.6e-213 744.2 439 80.0
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 8.6e-213 743.8 431 80.5
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.1e-212 743.4 474 75.5
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.1e-212 743.4 474 75.5
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 1.9e-212 742.7 461 77.4
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 5.5e-212 741.1 498 73.5
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 9.5e-212 740.3 456 77.6
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 9.5e-212 740.3 432 80.8
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 1.2e-211 740.0 502 73.1
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 1.6e-211 739.6 474 75.7
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 2.1e-211 739.2 502 73.1
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 2.8e-211 738.8 432 79.9
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 6.1e-211 737.6 465 77.0
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.0e-210 736.9 466 76.2
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 2.3e-210 735.7 438 78.3
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 2.3e-210 735.7 405 85.7
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 3.0e-210 735.3 417 82.3
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 6.8e-210 734.2 512 69.7
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 6.8e-210 734.2 459 76.7
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 8.9e-210 733.8 432 79.4
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 2.6e-209 732.3 477 74.2
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 2.6e-209 732.3 446 77.1
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 4.4e-209 731.5 475 75.2
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 3.7e-208 728.4 468 75.4
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 3.7e-208 728.4 475 74.9
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 4.9e-208 728.0 475 74.5
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 6.3e-208 727.6 477 74.8
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 6.3e-208 727.6 470 73.2
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 1.4e-207 726.5 461 75.7
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 1.8e-207 726.1 480 74.6
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 9.2e-207 723.8 460 75.4
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 1.2e-206 723.4 477 74.4
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 1.2e-206 723.4 458 76.2
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 3.5e-206 721.8 478 74.9
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 5.0e-205 718.0 471 71.8
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 8.6e-205 717.2 470 74.0
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 9.5e-204 713.8 389 88.9
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 1.2e-203 713.4 483 72.3
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 1.2e-203 713.4 477 73.8
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 1.6e-203 713.0 466 74.7
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 3.6e-203 711.8 484 72.1
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 8.0e-203 710.7 475 71.6
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 1.8e-202 709.5 499 72.3
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 3.1e-202 708.8 483 71.4
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 2.0e-201 706.1 428 78.0
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 2.6e-201 705.7 470 72.1
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 9.8e-201 703.7 467 73.2
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 9.8e-201 703.7 461 74.4
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 1.7e-200 703.0 485 71.3
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 1.7e-200 703.0 485 71.3
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 1.1e-199 700.3 504 69.6
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.4e-199 699.9 416 79.1
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 3.5e-198 695.3 471 70.5
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 6.0e-198 694.5 505 68.3
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 7.8e-198 694.1 491 68.2
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 2.5e-196 689.1 444 75.2
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 9.5e-196 687.2 449 73.5
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 1.2e-195 686.8 462 73.4
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 2.1e-195 686.0 443 73.6
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 8.0e-195 684.1 403 78.4
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 8.0e-195 684.1 462 72.9
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 2.3e-194 682.6 489 69.3
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 5.2e-194 681.4 448 73.4
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 6.8e-194 681.0 457 71.1
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 2.9e-192 675.6 430 76.0
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.0e-189 667.2 371 83.8
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 2.3e-189 666.0 474 68.8
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 2.3e-186 656.0 441 71.0
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 4.6e-182 641.7 449 67.7
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 1.6e-179 633.3 437 69.1
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 5.8e-177 624.8 362 80.4
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 8.7e-173 610.9 416 70.0
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 1.1e-170 604.0 496 63.1
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 3.6e-163 578.9 401 69.6
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.8e-162 576.6 443 65.9
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 4.2e-159 565.5 414 68.6
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 5.4e-159 565.1 475 61.9
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 4.8e-147 525.4 344 70.6
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 1.5e-145 520.4 519 56.6
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 1.1e-143 514.2 415 61.7
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 3.3e-140 502.7 262 87.4
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.4e-138 497.3 272 84.2
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 3.1e-138 496.1 380 63.2
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 4.5e-137 492.3 419 57.3
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 2.7e-134 483.0 407 58.5
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 9.7e-132 474.6 275 80.7
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 6.1e-126 455.3 294 74.8
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 2.8e-123 446.4 317 70.3
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 5.9e-121 438.7 252 81.0
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 5.2e-117 425.6 272 78.3
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 5.7e-116 422.2 317 67.2
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 9.1e-114 414.8 382 54.2
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 1.6e-113 414.1 437 49.7
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.8e-106 390.6 236 80.1
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 2.2e-104 383.6 369 53.4
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 5.2e-101 372.5 576 38.4
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 5.7e-92 342.4 432 44.7
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 3.2e-74 283.5 175 77.7
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 1.7e-72 277.7 204 64.7
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 1.1e-71 275.0 204 66.2
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 7.6e-60 235.7 141 78.7
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 1.5e-55 221.5 289 46.0
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 1.3e-54 218.4 184 62.5
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 8.1e-54 215.7 192 59.4
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 5.3e-53 213.0 310 37.7
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 2.4e-50 204.1 337 35.9
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 7.1e-50 202.6 184 59.2
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 1.0e-48 198.7 396 32.6
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 6.2e-46 189.5 115 74.8
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 3.4e-44 183.7 143 63.6
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 4.9e-43 179.9 351 35.6
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 5.5e-42 176.4 392 32.7
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 1.6e-41 174.9 399 30.3
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 3.1e-37 160.6 139 61.2
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 2.3e-32 144.4 74 79.7
C03p89940 Brassica napus HOM05D002268 ORTHO05D040778 9.0e-29 132.5 117 60.7
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 1.3e-27 128.6 89 77.5
Nn3g21873 Nelumbo nucifera HOM05D002268 ORTHO05D006937 1.1e-26 125.6 91 69.2
BolC3t21313H Brassica oleracea HOM05D002268 ORTHO05D040778 1.4e-26 125.2 113 60.2
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 7.2e-26 122.9 253 36.4
SEGI_39418 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 1.9e-23 114.8 101 53.5
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 2.2e-19 101.3 99 55.6
MELO3C032733.2 Cucumis melo HOM05D002268 ORTHO05D170637 1.2e-12 79.0 108 44.4
Actinidia23968 Actinidia chinensis HOM05D002268 ORTHO05D006937 6.1e-09 66.6 38 84.2
MELO3C035704.2 Cucumis melo HOM05D002268 ORTHO05D166817 1.0e-08 65.9 146 29.5
QL06p040831 Quercus lobata HOM05D002268 ORTHO05D006937 3.9e-08 63.9 31 87.1
C01p11650 Brassica napus HOM05D026831 ORTHO05D011195 3.7e-06 57.4 97 37.1
BolC2t12207H Brassica oleracea HOM05D002268 ORTHO05D042165 3.7e-06 57.4 97 37.1
C02p10780 Brassica napus HOM05D002268 ORTHO05D042165 4.8e-06 57.0 97 36.1


User provided reference genes

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