Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 5.9e-81 304.3 169 100.0
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 5.9e-33 144.8 90 75.6
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.9e-31 139.8 132 58.3
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.8e-29 133.3 127 53.5
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 2.3e-29 132.9 128 53.1
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.0e-29 132.1 127 53.5
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 6.8e-29 131.3 126 54.0
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 6.8e-29 131.3 126 54.0
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 2.0e-28 129.8 127 52.0
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 3.4e-28 129.0 127 52.8
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 9.8e-28 127.5 67 86.6
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 1.3e-27 127.1 148 48.6
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 2.9e-27 125.9 124 54.0
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 4.9e-27 125.2 127 50.4
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 6.4e-27 124.8 126 51.6
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 6.4e-27 124.8 69 84.1
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 8.3e-27 124.4 124 52.4
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 2.4e-26 122.9 124 53.2
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 3.2e-26 122.5 126 50.8
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 5.4e-26 121.7 127 51.2
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 7.0e-26 121.3 126 50.0
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 1.2e-25 120.6 85 69.4
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.0e-25 119.8 158 43.0
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 2.0e-25 119.8 67 80.6
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 2.0e-25 119.8 65 83.1
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 2.0e-25 119.8 123 51.2
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 2.7e-25 119.4 122 51.6
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 4.6e-25 118.6 123 49.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 6.0e-25 118.2 122 50.0
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 7.8e-25 117.9 123 50.4
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 7.8e-25 117.9 123 50.4
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.0e-24 117.5 124 48.4
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 1.3e-24 117.1 123 50.4
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 1.7e-24 116.7 131 48.1
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 2.3e-24 116.3 122 50.8
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 3.0e-24 115.9 128 46.9
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 3.9e-24 115.5 122 49.2
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 5.0e-24 115.2 128 46.1
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 5.0e-24 115.2 122 50.0
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 6.6e-24 114.8 123 48.8
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 6.6e-24 114.8 65 80.0
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 5.6e-23 111.7 116 53.4
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 7.3e-23 111.3 119 49.6
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 7.3e-23 111.3 122 48.4
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 7.3e-23 111.3 146 43.2
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 1.2e-22 110.5 77 71.4
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 2.1e-22 109.8 121 45.5
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 2.1e-22 109.8 117 51.3
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 1.1e-21 107.5 124 46.0
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.1e-21 107.5 124 46.0
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.1e-21 107.5 124 46.0
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 1.4e-21 107.1 118 46.6
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 1.4e-21 107.1 119 48.7
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 1.4e-21 107.1 128 47.7
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 2.3e-21 106.3 129 43.4
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.3e-21 106.3 124 45.2
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 4.0e-21 105.5 61 80.3
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 6.8e-21 104.8 114 49.1
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 1.2e-20 104.0 119 45.4
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 1.5e-20 103.6 52 86.5
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 1.5e-20 103.6 51 88.2
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 2.0e-20 103.2 115 47.8
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 9.8e-20 100.9 116 45.7
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 1.3e-19 100.5 117 45.3
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.3e-19 100.5 119 43.7
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 2.2e-19 99.8 122 41.0
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 2.2e-19 99.8 114 49.1
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 2.9e-19 99.4 67 73.1
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.1e-18 97.4 122 44.3
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 1.1e-18 97.4 122 44.3
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 1.1e-18 97.4 110 48.2
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 1.9e-18 96.7 49 85.7
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 4.1e-18 95.5 119 42.0
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 5.4e-18 95.1 134 38.8
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 7.0e-18 94.7 106 48.1
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 7.0e-18 94.7 106 48.1
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 7.0e-18 94.7 133 39.1
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 7.0e-18 94.7 133 39.1
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 1.2e-17 94.0 105 48.6
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.2e-17 94.0 105 48.6
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.2e-17 94.0 105 48.6
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 2.1e-17 93.2 105 47.6
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 2.1e-17 93.2 105 47.6
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 2.7e-17 92.8 163 35.6
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 2.7e-17 92.8 105 48.6
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 3.5e-17 92.4 133 38.3
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 3.5e-17 92.4 106 48.1
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 3.5e-17 92.4 107 47.7
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 6.0e-17 91.7 133 38.3
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 6.0e-17 91.7 105 47.6
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 7.8e-17 91.3 103 48.5
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 1.0e-16 90.9 50 74.0
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 1.0e-16 90.9 50 74.0
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 1.0e-16 90.9 105 47.6
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.3e-16 90.5 103 48.5
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 1.3e-16 90.5 103 48.5
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 1.3e-16 90.5 103 48.5
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.3e-16 90.5 105 47.6
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 1.3e-16 90.5 46 84.8
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 1.3e-16 90.5 103 48.5
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 1.7e-16 90.1 45 86.7
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.7e-16 90.1 107 48.6
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.7e-16 90.1 103 47.6
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 2.3e-16 89.7 45 84.4
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 3.0e-16 89.4 103 47.6
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 3.0e-16 89.4 45 86.7
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 3.0e-16 89.4 45 86.7
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 3.9e-16 89.0 103 47.6
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 3.9e-16 89.0 103 47.6
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 5.1e-16 88.6 103 47.6
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 5.1e-16 88.6 45 82.2
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 5.1e-16 88.6 45 82.2
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 5.1e-16 88.6 45 82.2
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 6.6e-16 88.2 45 84.4
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 6.6e-16 88.2 45 84.4
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 6.6e-16 88.2 157 35.7
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 6.6e-16 88.2 45 84.4
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.1e-15 87.4 45 84.4
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 1.1e-15 87.4 45 82.2
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.1e-15 87.4 45 82.2
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 1.5e-15 87.0 45 82.2
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 1.9e-15 86.7 45 82.2
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 4.3e-15 85.5 45 82.2
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 5.6e-15 85.1 45 77.8
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 1.2e-14 84.0 45 80.0
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 2.1e-14 83.2 102 43.1
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 2.8e-14 82.8 102 43.1
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 6.2e-14 81.6 99 43.4
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.1e-13 80.9 40 90.0
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.1e-13 80.9 40 90.0
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 1.1e-13 80.9 40 90.0
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 3.1e-13 79.3 42 78.6
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 5.2e-13 78.6 42 76.2
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 6.8e-13 78.2 121 38.0
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 6.8e-13 78.2 100 44.0
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 6.8e-13 78.2 101 40.6
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-12 77.4 124 37.9
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 1.2e-12 77.4 119 36.1
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.2e-12 77.4 98 44.9
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 1.5e-12 77.0 123 36.6
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 2.0e-12 76.6 100 40.0
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 2.0e-12 76.6 100 40.0
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 2.0e-12 76.6 100 40.0
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 2.0e-12 76.6 100 40.0
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 2.0e-12 76.6 100 40.0
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 2.0e-12 76.6 100 40.0
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.6e-12 76.3 41 78.0
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 4.4e-12 75.5 98 43.9
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 5.8e-12 75.1 41 73.2
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 1.3e-11 73.9 69 47.8
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 2.2e-11 73.2 71 52.1
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 2.9e-11 72.8 147 30.6
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 4.9e-11 72.0 36 83.3
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 1.1e-10 70.9 46 69.6
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 3.2e-10 69.3 37 78.4
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 2.3e-08 63.2 40 65.0
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 3.9e-08 62.4 71 49.3
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 2.5e-07 59.7 60 51.7
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 5.6e-07 58.5 74 39.2
AagrBONN_evm.TU.Sc2ySwM_251.1 Anthoceros agrestis HOM05D009278 ORTHO05D002685 9.5e-07 57.8 51 43.1
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 9.5e-07 57.8 74 39.2
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 1.2e-06 57.4 122 31.1
CAN.G1054.5 Capsicum annuum HOM05D002634 ORTHO05D003100 3.6e-06 55.8 53 47.2
PRCOL_00005022 Prasinoderma coloniale HOM05D001610 ORTHO05D002685 3.6e-06 55.8 69 40.6
Solyc04g078320.4 Solanum lycopersicum HOM05D002634 ORTHO05D003100 4.7e-06 55.5 53 47.2
Sopen04g031910 Solanum pennellii HOM05D002634 ORTHO05D003100 4.7e-06 55.5 53 47.2
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 6.2e-06 55.1 53 43.4
Manes.12G109000 Manihot esculenta HOM05D002634 ORTHO05D003100 8.1e-06 54.7 53 43.4


User provided reference genes

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