Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_23799 Corchorus olitorius HOM05D004437 ORTHO05D005401 8.4e-82 307.0 158 100.0
Atru.chr9.1501 Acer truncatum HOM05D004437 ORTHO05D005401 2.9e-58 228.8 158 74.1
MELO3C014010.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.2e-57 225.3 160 72.5
CsaV3_3G003440 Cucumis sativus L. HOM05D004437 ORTHO05D005401 7.2e-57 224.2 160 72.5
TAR374G0190 Trochodendron aralioides HOM05D004437 ORTHO05D005401 1.6e-56 223.0 148 75.0
CiPaw.12G100900 Carya illinoinensis HOM05D004437 ORTHO05D005401 2.7e-56 222.2 166 72.9
CDE06G2826 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.7e-56 222.2 158 72.2
Nn1g01279 Nelumbo nucifera HOM05D004437 ORTHO05D005401 3.6e-56 221.9 148 75.0
Cfa012070 Carpinus fangiana HOM05D004437 ORTHO05D005401 4.7e-56 221.5 176 69.3
Haze_08988 Corylus avellana HOM05D004437 ORTHO05D005401 6.1e-56 221.1 175 69.7
MD04G1070900 Malus domestica HOM05D004437 ORTHO05D005401 6.1e-56 221.1 128 82.8
Duzib138G0705 Durio zibethinus HOM05D004437 ORTHO05D005401 1.0e-55 220.3 159 71.7
Thecc.01G371500 Theobroma cacao HOM05D004437 ORTHO05D005401 6.7e-55 217.6 159 70.4
Gohir.A11G083500 Gossypium hirsutum HOM05D004437 ORTHO05D005401 1.1e-54 216.9 161 69.6
Gorai.007G093600 Gossypium raimondii HOM05D004437 ORTHO05D005401 1.1e-54 216.9 161 69.6
Sc22g0000410 Simmondsia chinensis HOM05D004437 ORTHO05D005401 1.1e-54 216.9 128 80.5
Sed0010224 Sechium edule HOM05D004437 ORTHO05D005401 1.5e-54 216.5 128 80.5
Eucgr.E01334 Eucalyptus grandis HOM05D004437 ORTHO05D005401 2.6e-54 215.7 128 81.2
Aqoxy5G03951 Aquilegia oxysepala HOM05D004437 ORTHO05D005401 4.4e-54 214.9 158 67.1
CANSAT21G0327 Cannabis sativa HOM05D004437 ORTHO05D005401 5.7e-54 214.5 124 84.7
Duzib133G0135 Durio zibethinus HOM05D004437 ORTHO05D005401 5.7e-54 214.5 162 69.1
Glyma.03G019600 Glycine max HOM05D004437 ORTHO05D005401 5.7e-54 214.5 129 81.4
Gohir.D11G087600 Gossypium hirsutum HOM05D004437 ORTHO05D005401 5.7e-54 214.5 161 68.9
ATR0661G478 Amborella trichopoda HOM05D004437 ORTHO05D005401 7.5e-54 214.2 129 80.6
Prupe.5G087000 Prunus persica HOM05D004437 ORTHO05D005401 9.7e-54 213.8 125 81.6
QL08p051220 Quercus lobata HOM05D004437 ORTHO05D005401 1.3e-53 213.4 127 81.1
VMungo0331G2039 Vigna mungo HOM05D004437 ORTHO05D005401 1.7e-53 213.0 129 80.6
GSVIVG01027575001 Vitis vinifera HOM05D004437 ORTHO05D005401 1.7e-53 213.0 147 76.2
Ca_23785_v3 Cicer arietinum L. HOM05D004437 ORTHO05D005401 2.8e-53 212.2 146 76.0
Medtr8g033340 Medicago truncatula HOM05D004437 ORTHO05D005401 2.8e-53 212.2 130 79.2
Phvul.010G087700 Phaseolus vulgaris HOM05D004437 ORTHO05D005401 3.7e-53 211.8 129 79.8
Psat4g150640 Pisum sativum HOM05D004437 ORTHO05D005401 4.8e-53 211.5 130 77.7
TAR629G1686 Trochodendron aralioides HOM05D004437 ORTHO05D005401 6.3e-53 211.1 158 70.9
Atru.chr5.365 Acer truncatum HOM05D004437 ORTHO05D005401 8.2e-53 210.7 158 69.0
Ciclev10022649m.g Citrus clementina HOM05D004437 ORTHO05D005401 1.8e-52 209.5 128 79.7
RcHm_v2.0_Chr7g0199901 Rosa chinensis HOM05D004437 ORTHO05D005401 2.4e-52 209.1 124 78.2
MELO3C006160.2 Cucumis melo HOM05D004437 ORTHO05D005401 3.1e-52 208.8 128 80.5
PGR042G1009 Punica granatum HOM05D004437 ORTHO05D005401 3.1e-52 208.8 128 79.7
Lj3g0004540 Lotus japonicus HOM05D004437 ORTHO05D005401 5.3e-52 208.0 156 67.9
TWI23G1180 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 5.3e-52 208.0 160 67.5
CiPaw.01G258300 Carya illinoinensis HOM05D004437 ORTHO05D005401 7.0e-52 207.6 158 68.4
Manes.05G042100 Manihot esculenta HOM05D004437 ORTHO05D005401 9.1e-52 207.2 158 69.6
CsaV3_3G009410 Cucumis sativus L. HOM05D004437 ORTHO05D005401 1.2e-51 206.8 128 79.7
Migut.C00761 Erythranthe guttata HOM05D004437 ORTHO05D005401 2.7e-51 205.7 132 76.5
MSTRG.25195 Avicennia marina HOM05D004437 ORTHO05D005401 4.5e-51 204.9 126 78.6
Dinv32406 Davidia involucrata HOM05D004437 ORTHO05D005401 5.9e-51 204.5 149 70.5
Manes.01G263900 Manihot esculenta HOM05D004437 ORTHO05D005401 1.0e-50 203.8 158 68.4
TWI14G0837 Tripterygium wilfordii HOM05D004437 ORTHO05D005401 1.0e-50 203.8 162 66.7
Dinv43738 Davidia involucrata HOM05D004437 ORTHO05D005401 1.3e-50 203.4 159 66.0
FAN08G0331 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.3e-50 203.4 124 76.6
Lalb_Chr10g0097651 Lupinus albus HOM05D004437 ORTHO05D005401 1.3e-50 203.4 149 71.1
Potri.003G119300 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.7e-50 203.0 125 80.8
Actinidia09575 Actinidia chinensis HOM05D004437 ORTHO05D005401 2.2e-50 202.6 155 69.7
Hma1.2p1_2548F.1_g324200 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 2.9e-50 202.2 149 68.5
FAN04G1903 Fragaria x ananassa HOM05D004437 ORTHO05D005401 5.0e-50 201.4 124 75.8
Hma1.2p1_0033F.1_g020790 Hydrangea macrophylla HOM05D004437 ORTHO05D005401 5.0e-50 201.4 149 67.8
Prupe.2G150900 Prunus persica HOM05D004437 ORTHO05D005401 5.0e-50 201.4 128 75.8
RcHm_v2.0_Chr1g0351651 Rosa chinensis HOM05D004437 ORTHO05D005401 5.0e-50 201.4 158 66.5
Peaxi162Scf00988g00110 Petunia axillaris HOM05D004437 ORTHO05D005401 8.5e-50 200.7 125 76.0
Potri.002G151500 Populus trichocarpa HOM05D004437 ORTHO05D005401 1.5e-49 199.9 122 78.7
FvH4_5g01190 Fragaria vesca HOM05D004437 ORTHO05D005401 1.9e-49 199.5 124 75.0
PSO478G3285 Papaver somniferum HOM05D004437 ORTHO05D005401 1.9e-49 199.5 123 78.0
PSO782G1895 Papaver somniferum HOM05D004437 ORTHO05D005401 1.9e-49 199.5 123 78.0
MD02G1197700 Malus domestica HOM05D004437 ORTHO05D005401 2.5e-49 199.1 127 76.4
THA.LOC104802003 Tarenaya hassleriana HOM05D004437 ORTHO05D005401 3.2e-49 198.7 126 74.6
ClCG05G001990 Citrullus lanatus HOM05D004437 ORTHO05D005401 9.4e-49 197.2 168 64.9
FAN13G0465 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.2e-48 196.8 130 73.1
FvH4_7g12660 Fragaria vesca HOM05D004437 ORTHO05D005401 1.6e-48 196.4 158 64.6
FAN10G0783 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.6e-48 196.4 158 64.6
FAN10G4017 Fragaria x ananassa HOM05D004437 ORTHO05D005401 1.6e-48 196.4 158 64.6
SEGI_23012 Sequoiadendron giganteum HOM05D004437 ORTHO05D005401 1.6e-48 196.4 128 76.6
C04p06550 Brassica napus HOM05D004437 ORTHO05D005401 2.7e-48 195.7 126 74.6
BolC4t22280H Brassica oleracea HOM05D004437 ORTHO05D005401 2.7e-48 195.7 126 74.6
BraA05t19533Z Brassica rapa HOM05D004437 ORTHO05D005401 2.7e-48 195.7 126 74.6
CARHR140860 Cardamine hirsuta HOM05D004437 ORTHO05D005401 2.7e-48 195.7 126 75.4
Nitab4.5_0007346g0070 Nicotiana tabacum HOM05D004437 ORTHO05D005401 2.7e-48 195.7 157 65.0
A05p05600 Brassica napus HOM05D004437 ORTHO05D005401 3.6e-48 195.3 151 64.9
Lsat_1_v5_gn_7_6120 Lactuca sativa HOM05D004437 ORTHO05D005401 3.6e-48 195.3 127 74.8
Carub.0004s2829 Capsella rubella HOM05D004437 ORTHO05D005401 4.7e-48 194.9 126 74.6
Cc02_g36970 Coffea canephora HOM05D004437 ORTHO05D005401 4.7e-48 194.9 126 74.6
Os02g0122000 Oryza sativa ssp. japonica HOM05D004437 ORTHO05D005401 4.7e-48 194.9 147 66.7
ClCG00G000160 Citrullus lanatus HOM05D004437 ORTHO05D005401 8.0e-48 194.1 128 75.0
ClCG10G003410 Citrullus lanatus HOM05D004437 ORTHO05D005401 8.0e-48 194.1 128 75.0
HanXRQChr06g0169271 Helianthus annuus HOM05D004437 ORTHO05D005401 8.0e-48 194.1 127 74.0
AL4G44810 Arabidopsis lyrata HOM05D004437 ORTHO05D005401 1.0e-47 193.7 155 64.5
arahy.Tifrunner.gnm1.ann1.7T3GCC Arachis hypogaea HOM05D004437 ORTHO05D005401 1.0e-47 193.7 128 73.4
arahy.Tifrunner.gnm1.ann1.9F5S9Q Arachis hypogaea HOM05D004437 ORTHO05D005401 1.0e-47 193.7 128 72.7
MSTRG.1255 Avicennia marina HOM05D004437 ORTHO05D005401 1.4e-47 193.4 124 75.8
BcaB02g09022 Brassica carinata HOM05D004437 ORTHO05D005401 1.4e-47 193.4 126 73.0
HanXRQChr04g0122121 Helianthus annuus HOM05D004437 ORTHO05D005401 1.8e-47 193.0 127 74.0
Sp4g27680 Schrenkiella parvula HOM05D004437 ORTHO05D005401 5.2e-47 191.4 155 64.5
Hund16975 Selenicereus undatus HOM05D004437 ORTHO05D005401 6.8e-47 191.0 127 74.0
ECA236G3516 Erigeron canadensis HOM05D004437 ORTHO05D005401 8.8e-47 190.7 123 75.6
CAN.G1608.2 Capsicum annuum HOM05D004437 ORTHO05D005401 1.2e-46 190.3 155 63.2
Solyc05g047690.3 Solanum lycopersicum HOM05D004437 ORTHO05D005401 1.2e-46 190.3 155 63.2
Sopen05g027940 Solanum pennellii HOM05D004437 ORTHO05D005401 1.2e-46 190.3 155 63.2
PGSC0003DMG400013695 Solanum tuberosum HOM05D004437 ORTHO05D005401 1.5e-46 189.9 155 63.2
Zm00001eb208420 Zea mays HOM05D004437 ORTHO05D005401 2.6e-46 189.1 158 62.7
CSS0011172 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 5.7e-46 188.0 118 77.1
Thhalv10001671m.g Eutrema salsugineum HOM05D004437 ORTHO05D005401 7.5e-46 187.6 126 73.0
SalBow7G1560 Salvia bowleyana HOM05D004437 ORTHO05D005401 7.5e-46 187.6 136 69.9
SGA_v2.0_scaffold201G41379 Striga asiatica HOM05D000186 ORTHO05D001124 9.8e-46 187.2 117 76.1
Hund14703 Selenicereus undatus HOM05D004437 ORTHO05D005401 1.3e-45 186.8 120 75.8
CSS0004475 Camellia sinensis var. sinensis HOM05D004437 ORTHO05D005401 1.7e-45 186.4 116 78.4
Lsat_1_v5_gn_7_59201 Lactuca sativa HOM05D004437 ORTHO05D005401 2.8e-45 185.7 132 71.2
SGA_v2.0_scaffold11G05840 Striga asiatica HOM05D000186 ORTHO05D001124 3.7e-45 185.3 116 75.9
COL.COLO4_12656 Corchorus olitorius HOM05D004437 ORTHO05D005401 6.3e-45 184.5 162 63.0
Potri.014G074000 Populus trichocarpa HOM05D004437 ORTHO05D005401 8.3e-45 184.1 123 70.7
AagrBONN_evm.TU.Sc2ySwM_228.779 Anthoceros agrestis HOM05D004437 ORTHO05D005401 1.1e-44 183.7 128 73.4
AT2G45640 Arabidopsis thaliana HOM05D004437 ORTHO05D005401 1.8e-44 183.0 155 61.9
Mapoly0086s0082 Marchantia polymorpha HOM05D004437 ORTHO05D005401 1.8e-44 183.0 138 65.9
vmacro13357 Vaccinium macrocarpon HOM05D004437 ORTHO05D005401 3.1e-44 182.2 204 52.9
AUR62017329 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.2e-43 180.3 138 64.5
SMO230G0007 Selaginella moellendorffii HOM05D004437 ORTHO05D005401 1.6e-43 179.9 158 63.3
MBI04_g06621_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 4.5e-43 178.3 109 78.9
Pp3c14_24540 Physcomitrium patens HOM05D004437 ORTHO05D005401 4.5e-43 178.3 120 72.5
unitig_578.g16077 Utricularia gibba HOM05D002183 ORTHO05D002169 5.9e-43 177.9 116 73.3
AUR62010560 Chenopodium quinoa HOM05D004437 ORTHO05D005401 1.0e-42 177.2 120 70.0
MBI04_g34692_MAGBIO Magnolia biondii HOM05D004437 ORTHO05D005401 2.9e-42 175.6 106 80.2
Nitab4.5_0001127g0160 Nicotiana tabacum HOM05D004437 ORTHO05D005401 1.1e-41 173.7 154 59.7
MD00G1131900 Malus domestica HOM05D004437 ORTHO05D005401 1.5e-41 173.3 156 59.0
CBR_g4404 Chara braunii HOM05D004437 ORTHO05D005401 3.2e-41 172.2 120 70.8
AUR62004271 Chenopodium quinoa HOM05D004437 ORTHO05D005401 5.5e-41 171.4 138 64.5
Nitab4.5_0001702g0190 Nicotiana tabacum HOM05D004437 ORTHO05D005401 7.2e-41 171.0 157 60.5
AagrBONN_evm.TU.Sc2ySwM_362.2206 Anthoceros agrestis HOM05D004437 ORTHO05D005401 9.5e-41 170.6 151 62.3
AUR62033386 Chenopodium quinoa HOM05D004437 ORTHO05D005401 9.5e-41 170.6 184 53.8
EL10Ac1g00948 Beta vulgaris HOM05D004437 ORTHO05D005401 4.7e-40 168.3 111 73.0
Nitab4.5_0004622g0030 Nicotiana tabacum HOM05D004437 ORTHO05D005401 4.7e-40 168.3 120 67.5
Sabra03G0083300 Salix brachista HOM05D004437 ORTHO05D005401 1.8e-39 166.4 106 79.2
FAN18G0922 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.3e-39 166.0 105 72.4
Zm00001eb230470 Zea mays HOM05D004437 ORTHO05D005401 2.0e-38 162.9 124 66.1
DCAR_006889 Daucus carota HOM05D004437 ORTHO05D005401 2.6e-38 162.5 124 65.3
Cpa.g.sc18.165 Carica papaya HOM05D004437 ORTHO05D005401 1.7e-37 159.8 91 80.2
Ah.12g057860 Amaranthus hybridus HOM05D004437 ORTHO05D005401 2.8e-37 159.1 126 63.5
BcaC01g05120 Brassica carinata HOM05D004437 ORTHO05D005401 3.7e-37 158.7 119 63.9
Sabra01G0086400 Salix brachista HOM05D004437 ORTHO05D005401 6.3e-37 157.9 128 66.4
BcaC02g12196 Brassica carinata HOM05D004437 ORTHO05D005401 8.3e-37 157.5 103 72.8
Sed0003115 Sechium edule HOM05D004437 ORTHO05D005401 3.1e-36 155.6 91 78.0
SHI32178 Sapria himalayana HOM05D004437 ORTHO05D005401 1.6e-35 153.3 116 63.8
FAN01G2781 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.7e-35 152.5 158 54.4
FAN06G0648 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.7e-35 152.5 158 54.4
FAN06G3102 Fragaria x ananassa HOM05D004437 ORTHO05D005401 2.7e-35 152.5 128 60.9
Aa31LG1G27110 Aethionema arabicum HOM05D004437 ORTHO05D005401 3.5e-35 152.1 99 72.7
TPR.G14692 Trifolium pratense HOM05D004437 ORTHO05D005401 5.9e-35 151.4 140 59.3
Cre09.g404400 Chlamydomonas reinhardtii HOM05D004437 ORTHO05D005401 8.6e-34 147.5 125 60.8
HPP92_025880 Vanilla planifolia HOM05D004437 ORTHO05D005401 1.2e-32 143.7 96 70.8
Lj9A574G30 Lonicera japonica HOM05D000186 ORTHO05D001124 1.7e-29 133.3 107 62.6
CDE04G2772 Ceratophyllum demersum HOM05D004437 ORTHO05D005401 2.3e-26 122.9 77 79.2
EL10Ac5g12685 Beta vulgaris HOM05D004437 ORTHO05D005401 3.3e-25 119.0 134 49.3
CAN.G126.10 Capsicum annuum HOM05D004437 ORTHO05D005401 1.2e-22 110.5 64 81.2
Glyma.07G081500 Glycine max HOM05D004437 ORTHO05D005401 3.4e-22 109.0 58 84.5
Haze_26096 Corylus avellana HOM05D004437 ORTHO05D005401 1.3e-21 107.1 121 44.6
Haze_16715 Corylus avellana HOM05D004437 ORTHO05D005401 8.3e-21 104.4 84 64.3
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 3.2e-20 102.4 55 81.8
Oeu058600.1 Olea europaea HOM05D004437 ORTHO05D005401 1.2e-19 100.5 69 71.0
Glyma.20G186451 Glycine max HOM05D004437 ORTHO05D005401 7.8e-19 97.8 58 79.3
Actinidia31448 Actinidia chinensis HOM05D004437 ORTHO05D005401 3.0e-18 95.9 125 52.8
C03p30120 Brassica napus HOM05D004437 ORTHO05D005401 1.9e-17 93.2 76 60.5
BolC3t15361H Brassica oleracea HOM05D004437 ORTHO05D005401 1.6e-16 90.1 76 59.2
BraA03t11727Z Brassica rapa HOM05D004437 ORTHO05D005401 4.7e-16 88.6 76 57.9
A03p25260 Brassica napus HOM05D004437 ORTHO05D005401 6.8e-15 84.7 47 83.0
DCAR_008576 Daucus carota HOM05D004437 ORTHO05D005401 1.1e-12 77.4 113 41.6
Atru.ctg1434.8 Acer truncatum HOM05D004437 ORTHO05D037942 1.4e-12 77.0 132 36.4
Cfa022890 Carpinus fangiana HOM05D004437 ORTHO05D037942 1.7e-10 70.1 151 31.8
BcaC09g48983 Brassica carinata HOM05D004437 ORTHO05D005401 3.6e-08 62.4 36 77.8
Sabra14G0052800 Salix brachista HOM05D000186 ORTHO05D001124 9.9e-06 54.3 135 34.1


User provided reference genes

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