Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1988.8 1012 100.0
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1694.5 1021 85.6
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1664.4 1021 84.1
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1646.3 1022 83.1
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1642.5 1021 82.6
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1642.1 1022 82.8
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1639.4 1022 82.9
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1635.9 1028 82.1
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1621.3 1021 83.1
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1530.4 1023 77.4
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1513.0 1032 76.6
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 1502.6 1033 75.9
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1491.5 1030 73.7
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1486.1 1032 75.5
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1483.0 908 83.9
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1482.2 982 78.0
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1476.5 1033 74.3
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1470.3 1033 75.0
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1468.8 1030 73.1
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1468.0 1022 75.2
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1466.8 1030 73.1
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1466.4 1043 73.8
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1460.7 1030 73.7
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1460.3 1039 73.7
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1456.8 1028 73.0
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1455.3 1009 75.4
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1453.3 1039 73.4
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1444.9 1034 73.9
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1442.9 1030 74.4
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1442.6 1021 73.9
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1441.8 1037 73.0
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1431.4 1021 72.8
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1430.2 1031 72.9
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1429.8 1030 73.1
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1426.4 1033 73.3
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1420.6 1037 72.8
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1416.0 1030 71.6
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1411.4 1008 72.2
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1409.8 1031 71.9
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1409.0 1033 72.8
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1408.7 1033 72.7
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1408.3 1079 69.9
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1406.7 1031 71.9
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1402.5 1021 73.0
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1396.3 1031 71.7
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1389.4 1024 71.8
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1388.6 984 74.7
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1384.0 1029 70.7
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1382.1 1031 70.6
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1380.2 1055 70.0
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1379.4 1033 71.4
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1379.0 1039 70.5
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1377.5 1047 70.6
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1377.1 1053 70.0
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1374.0 1030 69.8
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1372.1 1068 69.1
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1372.1 1031 70.8
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1369.8 1036 70.0
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1369.8 1035 69.9
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1369.0 1018 70.8
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1366.3 1035 70.6
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1365.9 1035 69.7
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1365.1 1032 70.7
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1364.0 1027 69.9
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1361.3 1027 70.6
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1360.9 1035 70.0
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1360.9 1035 70.0
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1360.1 1042 69.7
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1358.2 1030 70.4
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1354.3 1029 69.4
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1345.9 1027 69.4
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1344.3 1025 70.1
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1342.8 1029 69.5
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1341.6 1027 69.1
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 1013 70.1
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1338.6 1021 70.0
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1333.9 1013 69.7
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1332.8 1009 69.3
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1324.3 1020 68.2
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1318.9 1031 68.4
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1317.8 1040 67.7
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1316.2 1040 67.6
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1314.7 1033 66.9
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1313.9 1033 68.2
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1309.7 1010 68.6
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1309.3 1026 67.2
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1306.2 1031 68.6
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1305.0 1010 68.4
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1301.6 1027 67.2
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1300.8 897 75.9
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1299.6 1034 67.4
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1299.6 1068 64.9
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1297.0 898 76.8
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1297.0 942 72.6
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1295.4 1024 66.9
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1290.0 1039 66.7
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1286.2 1011 67.4
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1285.4 1036 67.4
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1283.9 1022 65.8
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1282.3 1038 65.3
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1278.8 1036 66.9
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1278.5 1026 65.8
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1274.6 1036 66.7
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1269.6 1014 67.5
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1267.7 1026 67.0
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1265.8 1015 67.5
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1265.4 1015 67.4
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1252.7 1037 64.9
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1247.3 1012 66.5
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1246.1 990 66.8
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1243.0 1039 66.1
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1241.1 1038 63.6
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1227.6 1035 65.2
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1226.8 1015 64.9
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1223.8 1018 65.4
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1221.5 1042 63.1
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1217.2 1055 64.0
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1166.0 1035 63.0
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1144.0 1044 61.9
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1139.0 1031 59.8
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1134.0 1053 61.0
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1130.2 936 64.7
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1121.7 1040 59.9
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1109.4 1000 60.5
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1094.3 1073 58.2
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1089.7 1023 59.5
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1082.4 926 64.0
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.4e-310 1068.9 1033 57.6
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 4.9e-292 1008.1 999 57.4
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.1e-291 1006.9 1042 57.7
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 9.0e-278 960.7 783 67.6
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 5.5e-275 951.4 902 58.0
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 6.7e-257 891.3 836 59.2
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 1.4e-254 883.6 991 51.9
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 2.7e-250 869.4 727 66.0
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 3.6e-250 869.0 1008 50.1
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 1.6e-245 853.6 750 64.1
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.0e-240 836.6 992 48.4
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.8e-233 813.5 996 47.7
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 2.9e-228 796.2 1002 46.6
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 5.7e-224 781.9 850 50.9
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.2e-216 757.7 816 52.8
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 9.2e-206 721.5 715 61.1
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.1e-190 671.4 661 58.1
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 9.2e-190 668.3 920 43.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.4e-177 627.1 823 48.4
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 5.1e-172 609.4 642 53.9
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.4e-158 564.7 960 38.9
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 8.5e-151 538.9 660 49.1
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.1e-150 538.5 636 50.3
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 4.2e-142 510.0 644 48.1
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.7e-141 507.3 1145 34.3
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 3.0e-124 450.7 402 60.2
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 6.1e-117 426.4 649 42.4
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 1.5e-115 421.8 541 47.5
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 4.1e-105 387.1 277 72.2
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 5.8e-91 340.1 238 73.5
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 3.6e-85 320.9 270 64.4
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.7e-79 302.0 311 55.9
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 4.2e-65 254.2 1046 27.3
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.6e-64 252.3 255 56.5
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 7.6e-51 206.8 777 27.5
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 1.1e-49 203.0 925 24.5
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 3.5e-48 198.0 161 63.4
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 7.9e-48 196.8 216 50.9
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 2.1e-45 188.7 155 63.9
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.4e-42 176.8 230 43.5
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 3.5e-40 171.4 176 52.8
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.8e-37 161.8 148 56.1
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 7.2e-33 147.1 236 41.1
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.2e-25 121.7 128 53.1
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 3.3e-22 111.7 121 52.1
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 7.4e-22 110.5 144 41.7
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 9.7e-22 110.2 121 46.3
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.5e-14 86.3 85 60.0
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.0e-10 73.6 55 69.1
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.5e-09 69.7 65 53.8


User provided reference genes

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