Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 2.1e-92 342.4 186 100.0
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 3.0e-70 268.9 231 69.3
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 5.7e-69 264.6 233 68.7
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 9.0e-67 257.3 232 67.7
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.0e-66 256.1 232 67.7
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 5.9e-66 254.6 232 67.2
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.4e-61 237.7 233 63.9
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 6.5e-57 224.6 233 61.4
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 1.6e-55 219.9 224 60.7
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 3.6e-55 218.8 226 61.1
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.1e-53 213.8 226 60.2
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 2.0e-53 213.0 231 58.0
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 1.7e-52 209.9 234 55.6
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 3.7e-52 208.8 232 56.0
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 3.7e-52 208.8 233 57.1
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 3.1e-51 205.7 238 54.6
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 4.1e-51 205.3 223 57.4
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 5.9e-50 201.4 261 52.1
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 1.0e-49 200.7 233 58.8
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.7e-49 199.9 225 55.6
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.7e-49 199.9 233 52.4
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 3.8e-49 198.7 230 53.9
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 3.8e-49 198.7 233 56.2
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 5.0e-49 198.4 226 55.8
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 6.5e-49 198.0 221 55.2
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 8.5e-49 197.6 226 55.8
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 1.1e-48 197.2 237 52.3
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 1.4e-48 196.8 230 53.9
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 2.5e-48 196.1 226 53.5
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 4.2e-48 195.3 239 51.9
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 7.2e-48 194.5 225 53.8
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 9.4e-48 194.1 223 56.5
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 2.7e-47 192.6 234 56.0
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 3.6e-47 192.2 230 54.8
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 8.0e-47 191.0 234 52.6
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 3.0e-46 189.1 238 52.9
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 5.2e-46 188.3 223 54.7
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 6.7e-46 188.0 229 53.7
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 7.4e-45 184.5 224 52.2
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 8.2e-44 181.0 276 47.5
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 1.4e-43 180.3 229 52.4
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 3.1e-43 179.1 219 52.1
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 7.0e-43 177.9 227 52.0
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 2.0e-42 176.4 217 53.5
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 2.6e-42 176.0 234 50.9
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.3e-41 173.7 218 52.3
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 1.7e-41 173.3 209 53.6
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 2.2e-41 172.9 226 52.2
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 5.0e-41 171.8 224 51.8
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 5.0e-41 171.8 258 45.3
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 1.5e-40 170.2 234 49.6
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.9e-40 169.9 229 49.8
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 2.5e-40 169.5 241 46.9
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 2.5e-40 169.5 232 48.7
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 4.2e-40 168.7 228 49.6
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 5.5e-40 168.3 232 50.0
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 9.4e-40 167.5 223 50.7
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 9.4e-40 167.5 227 50.2
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 2.7e-39 166.0 231 48.9
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 2.7e-39 166.0 217 48.4
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 3.6e-39 165.6 227 49.3
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 4.7e-39 165.2 222 51.8
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 4.7e-39 165.2 219 51.1
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 8.0e-39 164.5 222 51.4
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 4.0e-38 162.2 215 52.1
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 4.0e-38 162.2 258 45.0
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 5.2e-38 161.8 224 51.3
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 3.3e-37 159.1 233 48.1
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 4.4e-37 158.7 205 52.2
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 9.7e-37 157.5 228 46.9
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 9.7e-37 157.5 228 46.9
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 9.7e-37 157.5 233 46.4
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 9.7e-37 157.5 217 49.8
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 2.2e-36 156.4 227 47.1
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 2.2e-36 156.4 222 46.8
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 2.8e-36 156.0 208 49.0
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 3.7e-36 155.6 224 46.4
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 3.7e-36 155.6 234 45.7
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 4.8e-36 155.2 226 46.9
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 6.3e-36 154.8 228 47.4
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 6.3e-36 154.8 228 47.4
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 6.3e-36 154.8 228 47.4
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 6.3e-36 154.8 230 46.1
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 8.3e-36 154.5 208 49.5
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 8.3e-36 154.5 218 49.5
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 2.4e-35 152.9 224 47.3
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 2.4e-35 152.9 209 48.3
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 3.1e-35 152.5 224 46.9
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 2.0e-34 149.8 226 46.0
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 2.0e-34 149.8 226 45.1
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.7e-34 149.4 223 47.1
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 2.7e-34 149.4 226 45.6
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 3.5e-34 149.1 215 47.4
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 4.5e-34 148.7 226 45.6
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 4.5e-34 148.7 215 47.9
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 7.7e-34 147.9 214 47.7
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 7.7e-34 147.9 214 47.7
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.2e-33 146.4 205 50.2
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 2.2e-33 146.4 194 49.5
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 3.8e-33 145.6 225 47.6
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 3.8e-33 145.6 214 46.7
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 1.1e-32 144.1 328 35.4
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 1.5e-32 143.7 221 45.2
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.5e-32 142.9 178 50.0
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.5e-32 142.9 178 50.0
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 3.2e-32 142.5 222 44.6
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 9.4e-32 141.0 215 45.6
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 9.4e-32 141.0 219 46.1
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 1.2e-31 140.6 129 62.8
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 1.2e-31 140.6 211 45.0
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.0e-30 137.5 220 44.5
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 1.0e-30 137.5 220 44.5
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.4e-30 137.1 223 46.6
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 1.5e-29 133.7 215 44.7
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 1.3e-28 130.6 191 45.5
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 1.7e-28 130.2 232 42.7
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 2.8e-28 129.4 184 49.5
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 6.3e-28 128.3 211 45.5
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 2.0e-26 123.2 174 47.7
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 7.7e-26 121.3 264 39.0
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 7.7e-26 121.3 264 39.0
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 3.8e-25 119.0 132 58.3
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 7.2e-24 114.8 128 55.5
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 1.6e-23 113.6 210 40.5
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 6.1e-23 111.7 188 44.7
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.4e-22 110.5 217 39.2
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 1.4e-19 100.5 224 38.4
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 7.0e-19 98.2 291 34.0
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 5.0e-17 92.0 203 38.9
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 1.9e-16 90.1 130 50.0
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 1.9e-16 90.1 57 80.7
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 1.4e-14 84.0 127 47.2
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 3.1e-14 82.8 130 48.5
GSVIVG01013911001 Vitis vinifera HOM05D004799 ORTHO05D005500 1.3e-12 77.4 83 50.6
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 1.9e-11 73.6 57 64.9
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 9.2e-11 71.2 123 44.7
CSS0012117 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 2.0e-10 70.1 45 77.8
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 3.5e-10 69.3 249 29.7
CSS0018254 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 4.6e-10 68.9 45 77.8
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 1.0e-09 67.8 41 80.5
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 3.0e-09 66.2 145 38.6
BcaB03g13258 Brassica carinata HOM05D004799 ORTHO05D005500 8.6e-09 64.7 91 45.1
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 8.0e-07 58.2 181 30.4
Lj5A250G20 Lonicera japonica HOM05D012292 ORTHO05D012234 8.0e-07 58.2 63 50.8
Ah.13g066130 Amaranthus hybridus HOM05D004799 ORTHO05D005500 3.1e-06 56.2 67 47.8
SEGI_00858 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 6.8e-06 55.1 126 36.5


User provided reference genes

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