Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17713 Corchorus olitorius HOM05D000974 ORTHO05D006000 3.8e-304 1047.3 532 100.0
Duzib132G0946 Durio zibethinus HOM05D000974 ORTHO05D006000 9.5e-279 963.0 537 90.9
Thecc.02G017200 Theobroma cacao HOM05D000974 ORTHO05D006000 4.7e-278 960.7 533 91.2
Duzib052G0127 Durio zibethinus HOM05D000974 ORTHO05D006000 3.5e-273 944.5 537 89.6
Gohir.D12G043400 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.6e-265 919.1 533 87.8
Gorai.008G045600 Gossypium raimondii HOM05D000974 ORTHO05D006000 1.9e-263 912.1 533 87.8
Manes.07G025100 Manihot esculenta HOM05D000974 ORTHO05D006000 1.8e-245 852.4 533 82.2
Gohir.A01G185000 Gossypium hirsutum HOM05D000974 ORTHO05D006000 1.2e-241 839.7 534 80.9
Gorai.002G218200 Gossypium raimondii HOM05D000974 ORTHO05D006000 2.1e-241 839.0 534 80.9
Ciclev10000877m.g Citrus clementina HOM05D000974 ORTHO05D006000 3.5e-241 838.2 530 81.1
Potri.004G225500 Populus trichocarpa HOM05D000974 ORTHO05D006000 1.1e-239 833.2 537 81.4
Atru.chr9.317 Acer truncatum HOM05D000974 ORTHO05D006000 1.1e-237 826.6 532 81.2
Cpa.g.sc113.32 Carica papaya HOM05D000974 ORTHO05D006000 1.8e-237 825.9 538 78.6
Ca_04891_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 3.2e-234 815.1 534 77.0
Dinv29601 Davidia involucrata HOM05D000974 ORTHO05D006000 1.6e-233 812.8 539 79.0
Atru.chr1.4075 Acer truncatum HOM05D000974 ORTHO05D006000 2.1e-233 812.4 531 80.2
Dinv19422 Davidia involucrata HOM05D000974 ORTHO05D006000 3.9e-232 808.1 510 81.8
QL02p100861 Quercus lobata HOM05D000974 ORTHO05D006000 2.5e-231 805.4 548 77.0
Sabra01G0171200 Salix brachista HOM05D000974 ORTHO05D006000 5.7e-231 804.3 553 75.4
Psat2g146560 Pisum sativum HOM05D000974 ORTHO05D006000 1.3e-230 803.1 531 76.5
GSVIVG01038784001 Vitis vinifera HOM05D000974 ORTHO05D006000 2.8e-230 802.0 508 80.5
TWI15G1214 Tripterygium wilfordii HOM05D000974 ORTHO05D006000 8.2e-230 800.4 537 77.8
ClCG10G007320 Citrullus lanatus HOM05D000974 ORTHO05D006000 9.1e-229 797.0 536 77.2
Cfa004480 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.5e-228 796.2 535 78.3
Nn5g27502 Nelumbo nucifera HOM05D000974 ORTHO05D006000 7.7e-228 793.9 461 84.6
MELO3C016483.2 Cucumis melo HOM05D000974 ORTHO05D006000 1.7e-227 792.7 536 76.3
PGR142G3566 Punica granatum HOM05D000974 ORTHO05D006000 3.8e-227 791.6 504 80.8
DCAR_006665 Daucus carota HOM05D000974 ORTHO05D006000 1.9e-226 789.3 506 78.9
CSS0025059 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.5e-226 788.9 458 85.8
CsaV3_3G006560 Cucumis sativus L. HOM05D000974 ORTHO05D006000 4.2e-226 788.1 536 76.1
Peaxi162Scf00011g01426 Petunia axillaris HOM05D000974 ORTHO05D006000 4.2e-226 788.1 530 76.4
PGSC0003DMG400024886 Solanum tuberosum HOM05D000974 ORTHO05D006000 4.2e-226 788.1 449 86.0
vmacro01708 Vaccinium macrocarpon HOM05D000974 ORTHO05D006000 4.2e-226 788.1 461 84.6
CANSAT54G1032 Cannabis sativa HOM05D000974 ORTHO05D006000 5.5e-226 787.7 464 84.3
Glyma.10G156900 Glycine max HOM05D000974 ORTHO05D006000 5.5e-226 787.7 541 74.5
Phvul.007G182100 Phaseolus vulgaris HOM05D000974 ORTHO05D006000 5.5e-226 787.7 535 76.3
TAR381G1040 Trochodendron aralioides HOM05D000974 ORTHO05D006000 5.5e-226 787.7 528 76.9
MBI06_g06706_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D006000 9.4e-226 786.9 441 86.8
Ca_12589_v3 Cicer arietinum L. HOM05D000974 ORTHO05D006000 1.2e-225 786.6 523 76.5
Rhsim07G0227800 Rhododendron simsii HOM05D000974 ORTHO05D006000 2.1e-225 785.8 472 84.3
Sed0019412 Sechium edule HOM05D000974 ORTHO05D006000 2.1e-225 785.8 487 81.1
Gohir.D01G176200 Gossypium hirsutum HOM05D000974 ORTHO05D006000 2.7e-225 785.4 534 77.2
CSS0010237 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.6e-225 785.0 462 85.1
VMungo0720G1793 Vigna mungo HOM05D000974 ORTHO05D006000 4.7e-225 784.6 527 76.9
Medtr5g025310 Medicago truncatula HOM05D000974 ORTHO05D006000 1.8e-224 782.7 532 74.2
Haze_10037 Corylus avellana HOM05D000974 ORTHO05D006000 3.0e-224 781.9 534 76.6
Rhsim07G0227600 Rhododendron simsii HOM05D000974 ORTHO05D006000 3.0e-224 781.9 472 84.1
Sopen01g045790 Solanum pennellii HOM05D000974 ORTHO05D006000 3.0e-224 781.9 530 76.0
Cc02_g23270 Coffea canephora HOM05D000974 ORTHO05D006000 5.1e-224 781.2 513 77.0
CAN.G855.13 Capsicum annuum HOM05D000974 ORTHO05D006000 6.7e-224 780.8 506 77.5
Solyc01g103440.3 Solanum lycopersicum HOM05D000974 ORTHO05D006000 3.3e-223 778.5 530 76.0
THA.LOC104816816 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 4.4e-223 778.1 496 79.6
Nitab4.5_0002347g0020 Nicotiana tabacum HOM05D000974 ORTHO05D006000 5.7e-223 777.7 529 76.2
AL1G20430 Arabidopsis lyrata HOM05D000974 ORTHO05D006000 1.8e-221 772.7 459 82.8
THA.LOC104816783 Tarenaya hassleriana HOM05D000974 ORTHO05D006000 1.8e-221 772.7 489 79.8
CiPaw.06G174600 Carya illinoinensis HOM05D000974 ORTHO05D006000 2.4e-221 772.3 536 75.6
MSTRG.5204 Avicennia marina HOM05D000974 ORTHO05D006000 4.1e-221 771.5 520 75.4
Lj5C267T12 Lonicera japonica HOM05D000974 ORTHO05D006000 4.5e-220 768.1 502 78.5
Rhsim11G0122100 Rhododendron simsii HOM05D000974 ORTHO05D006000 7.7e-220 767.3 468 82.5
Carub.0001s0921 Capsella rubella HOM05D000974 ORTHO05D006000 5.0e-219 764.6 458 83.0
AUR62020045 Chenopodium quinoa HOM05D000974 ORTHO05D006000 6.5e-219 764.2 442 85.5
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 8.5e-219 763.8 478 79.9
arahy.Tifrunner.gnm1.ann1.0Q8MRK Arachis hypogaea HOM05D000974 ORTHO05D006000 1.5e-218 763.1 482 78.6
arahy.Tifrunner.gnm1.ann1.DWF5LU Arachis hypogaea HOM05D000974 ORTHO05D006000 1.5e-218 763.1 482 78.6
BcaB03g13541 Brassica carinata HOM05D000974 ORTHO05D006000 9.4e-218 760.4 539 73.3
Nitab4.5_0003816g0050 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.2e-217 760.0 524 75.0
Prupe.1G580800 Prunus persica HOM05D000974 ORTHO05D006000 2.1e-217 759.2 476 80.3
AUR62001730 Chenopodium quinoa HOM05D000974 ORTHO05D006000 3.6e-217 758.4 442 85.1
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 3.6e-217 758.4 524 75.0
MD08G1243400 Malus domestica HOM05D000974 ORTHO05D006000 4.7e-217 758.1 482 79.3
Hund18885 Selenicereus undatus HOM05D000974 ORTHO05D006000 8.0e-217 757.3 515 76.1
TPR.G5252 Trifolium pratense HOM05D000974 ORTHO05D006000 1.0e-216 756.9 448 83.0
Eucgr.I02775 Eucalyptus grandis HOM05D000974 ORTHO05D006000 1.4e-216 756.5 532 73.7
Lj5g0022297 Lotus japonicus HOM05D000974 ORTHO05D006000 2.3e-216 755.7 535 73.3
AT1G09830 Arabidopsis thaliana HOM05D000974 ORTHO05D006000 6.7e-216 754.2 459 81.0
A08p34320 Brassica napus HOM05D000974 ORTHO05D006000 8.8e-216 753.8 546 72.0
MD15G1437700 Malus domestica HOM05D000974 ORTHO05D006000 2.6e-215 752.3 580 69.8
HPP92_001871 Vanilla planifolia HOM05D000974 ORTHO05D006000 7.4e-215 750.7 533 73.0
BcaC07g38528 Brassica carinata HOM05D000974 ORTHO05D006000 9.7e-215 750.4 535 72.7
Lalb_Chr21g0311651 Lupinus albus HOM05D000974 ORTHO05D006000 1.7e-214 749.6 534 73.0
EL10Ac7g16076 Beta vulgaris HOM05D000974 ORTHO05D006000 2.2e-214 749.2 458 82.5
ECA236G4964 Erigeron canadensis HOM05D000974 ORTHO05D006000 2.8e-214 748.8 438 83.6
Ah.08g220180 Amaranthus hybridus HOM05D000974 ORTHO05D006000 1.1e-213 746.9 446 83.0
Aa31LG1G5090 Aethionema arabicum HOM05D000974 ORTHO05D006000 1.4e-213 746.5 557 70.2
A06p06550 Brassica napus HOM05D000974 ORTHO05D006000 1.8e-213 746.1 437 84.0
HanXRQChr11g0329691 Helianthus annuus HOM05D000974 ORTHO05D006000 7.0e-213 744.2 479 78.5
ATR0598G043 Amborella trichopoda HOM05D000974 ORTHO05D006000 2.6e-212 742.3 438 82.0
Sc17g0003920 Simmondsia chinensis HOM05D000974 ORTHO05D006000 2.6e-212 742.3 467 78.8
Sp1g08460 Schrenkiella parvula HOM05D000974 ORTHO05D006000 5.9e-212 741.1 505 75.8
BraA08t35343Z Brassica rapa HOM05D000974 ORTHO05D006000 5.0e-211 738.0 545 70.6
Thhalv10007333m.g Eutrema salsugineum HOM05D000974 ORTHO05D006000 1.1e-210 736.9 458 79.5
SalBow8G2098 Salvia bowleyana HOM05D000974 ORTHO05D006000 1.9e-210 736.1 428 84.6
BolC8t48951H Brassica oleracea HOM05D000974 ORTHO05D006000 4.2e-210 734.9 538 71.9
HanXRQChr06g0176431 Helianthus annuus HOM05D000974 ORTHO05D006000 7.2e-210 734.2 439 82.9
BcaC05g24841 Brassica carinata HOM05D000974 ORTHO05D006000 2.3e-208 729.2 536 71.8
Lsat_1_v5_gn_7_76800 Lactuca sativa HOM05D000974 ORTHO05D006000 3.0e-208 728.8 533 70.7
SalBow4G1817 Salvia bowleyana HOM05D000974 ORTHO05D006000 3.0e-208 728.8 428 83.9
CARHR009850 Cardamine hirsuta HOM05D000974 ORTHO05D006000 4.0e-208 728.4 521 72.9
C05p07940 Brassica napus HOM05D000974 ORTHO05D006000 5.2e-208 728.0 536 71.8
BolC5t29546H Brassica oleracea HOM05D000974 ORTHO05D006000 1.2e-207 726.9 425 84.0
Os08g0191200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.2e-207 726.9 436 80.7
Zm00001eb294330 Zea mays HOM05D000974 ORTHO05D006000 1.3e-206 723.4 510 72.2
Os12g0197100 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D006000 1.7e-206 723.0 437 80.5
BraA06t23866Z Brassica rapa HOM05D000974 ORTHO05D006000 2.8e-206 722.2 536 71.1
Aqoxy1G01816 Aquilegia oxysepala HOM05D000974 ORTHO05D006000 3.7e-206 721.8 489 75.7
HPP92_026669 Vanilla planifolia HOM05D000974 ORTHO05D006000 6.3e-206 721.1 447 78.1
PSO170G5315 Papaver somniferum HOM05D000974 ORTHO05D006000 2.5e-202 709.1 550 67.8
PSO782G2965 Papaver somniferum HOM05D000974 ORTHO05D006000 1.8e-200 703.0 550 67.3
Migut.N00845 Erythranthe guttata HOM05D000974 ORTHO05D006000 5.2e-200 701.4 448 78.8
SEGI_14806 Sequoiadendron giganteum HOM05D000974 ORTHO05D006000 9.8e-199 697.2 449 74.8
FAN10G2816 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.9e-195 685.6 399 84.7
SGA_v2.0_scaffold42G15899 Striga asiatica HOM05D000974 ORTHO05D006000 4.7e-193 678.3 497 69.2
Gohir.A12G043800 Gossypium hirsutum HOM05D000974 ORTHO05D006000 8.3e-190 667.5 394 88.1
CDE02G0137 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.2e-189 665.6 405 80.7
SMO358G0426 Selaginella moellendorffii HOM05D000974 ORTHO05D006000 5.6e-186 654.8 426 73.2
Pp3c19_9430 Physcomitrium patens HOM05D000974 ORTHO05D006000 2.1e-185 652.9 455 70.5
Pp3c22_7830 Physcomitrium patens HOM05D000974 ORTHO05D006000 5.2e-184 648.3 465 68.4
Mapoly0041s0149 Marchantia polymorpha HOM05D000974 ORTHO05D006000 4.9e-182 641.7 456 68.6
AagrBONN_evm.TU.Sc2ySwM_368.1734 Anthoceros agrestis HOM05D000974 ORTHO05D006000 8.3e-174 614.4 428 69.9
CDE04G1010 Ceratophyllum demersum HOM05D000974 ORTHO05D006000 3.5e-172 609.0 369 79.9
Oeu030849.1 Olea europaea HOM05D000974 ORTHO05D006000 2.1e-161 573.2 324 86.4
C08p13210 Brassica napus HOM05D000974 ORTHO05D006000 2.4e-152 543.1 410 71.5
Nitab4.5_0003281g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.4e-149 533.9 302 86.8
CBR_g36226 Chara braunii HOM05D000974 ORTHO05D006000 1.0e-147 527.7 435 60.7
Eucgr.I02773 Eucalyptus grandis HOM05D000974 ORTHO05D006000 8.7e-147 524.6 325 79.7
CSS0038090 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 2.2e-142 510.0 299 85.3
MCO16G439 Micromonas commoda HOM05D000974 ORTHO05D006000 1.9e-141 506.9 432 60.2
unitig_8.g3587 Utricularia gibba HOM05D000974 ORTHO05D006000 5.5e-141 505.4 303 80.5
Cre18.g749497 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 2.7e-140 503.1 448 57.8
CSS0048615 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.0e-131 474.6 299 79.9
Zm00001eb342350 Zea mays HOM05D000974 ORTHO05D006000 3.1e-128 463.0 275 82.5
Nitab4.5_0003893g0040 Nicotiana tabacum HOM05D000974 ORTHO05D006000 6.5e-126 455.3 333 72.7
PRCOL_00005058 Prasinoderma coloniale HOM05D000974 ORTHO05D006000 8.2e-121 438.3 424 55.4
Pp3s32_121 Physcomitrium patens HOM05D000974 ORTHO05D006000 1.9e-109 400.6 426 47.7
arahy.Tifrunner.gnm1.ann1.FF9LB7 Arachis hypogaea HOM05D000974 ORTHO05D006000 4.2e-101 372.9 242 78.5
Cfa023437 Carpinus fangiana HOM05D000974 ORTHO05D006000 1.1e-96 358.2 432 45.1
Nitab4.5_0003893g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.8e-83 314.3 175 83.4
Cfa022594 Carpinus fangiana HOM05D000974 ORTHO05D006000 3.7e-73 280.0 358 42.7
CSS0011192 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 1.4e-59 235.0 133 84.2
Nitab4.5_0001773g0060 Nicotiana tabacum HOM05D000974 ORTHO05D006000 1.9e-53 214.5 177 65.5
arahy.Tifrunner.gnm1.ann1.LT2KYF Arachis hypogaea HOM05D000974 ORTHO05D006000 5.2e-51 206.5 124 83.1
unitig_8.g3588 Utricularia gibba HOM05D000974 ORTHO05D006000 2.7e-47 194.1 120 75.8
Hund18887 Selenicereus undatus HOM05D000974 ORTHO05D006000 7.8e-47 192.6 183 59.0
CSS0022082 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D006000 3.3e-45 187.2 131 71.0
Cre18.g749647 Chlamydomonas reinhardtii HOM05D000974 ORTHO05D006000 3.3e-45 187.2 180 53.3
Actinidia38994 Actinidia chinensis HOM05D000974 ORTHO05D006000 1.7e-38 164.9 96 79.2
A07p04420 Brassica napus HOM05D000974 ORTHO05D016809 1.3e-36 158.7 101 74.3
BraA07t28236Z Brassica rapa HOM05D000974 ORTHO05D016809 1.3e-36 158.7 101 74.3
arahy.Tifrunner.gnm1.ann1.3IC4JN Arachis hypogaea HOM05D000974 ORTHO05D006000 1.1e-32 145.6 90 80.0
BcaC04g19187 Brassica carinata HOM05D000974 ORTHO05D016809 2.4e-32 144.4 123 60.2
BcaC01g01590 Brassica carinata HOM05D000974 ORTHO05D016809 1.6e-31 141.7 123 59.3
C03p74280 Brassica napus HOM05D000974 ORTHO05D016809 6.0e-31 139.8 199 45.2
C08p14510 Brassica napus HOM05D000974 ORTHO05D016809 2.3e-30 137.9 120 58.3
A06p28170 Brassica napus HOM05D000974 ORTHO05D016809 1.5e-29 135.2 81 79.0
BcaC01g02641 Brassica carinata HOM05D000974 ORTHO05D016809 2.8e-28 131.0 167 50.3
C03p62530 Brassica napus HOM05D000974 ORTHO05D016809 4.0e-27 127.1 87 70.1
BolC3t18510H Brassica oleracea HOM05D000974 ORTHO05D016809 4.0e-27 127.1 87 70.1
Sabra03G0003100 Salix brachista HOM05D000974 ORTHO05D006000 5.3e-27 126.7 78 75.6
Nitab4.5_0000787g0090 Nicotiana tabacum HOM05D000017 ORTHO05D000308 3.5e-23 114.0 82 73.2
Haze_26160 Corylus avellana HOM05D003155 ORTHO05D004342 5.3e-19 100.1 258 30.2
arahy.Tifrunner.gnm1.ann1.G9FX3A Arachis hypogaea HOM05D000974 ORTHO05D083560 8.4e-17 92.8 53 81.1


User provided reference genes

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