Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 2.8e-154 548.5 269 100.0
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 1.9e-89 333.2 589 39.9
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 1.0e-82 310.8 591 37.9
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.8e-74 282.3 554 38.4
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 8.8e-55 218.0 583 30.2
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 8.2e-53 211.5 613 29.5
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 1.1e-52 211.1 585 29.4
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 2.0e-51 206.8 584 30.0
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.5e-51 206.1 206 56.3
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 6.5e-50 201.8 584 29.3
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 8.5e-50 201.4 587 29.0
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 1.5e-49 200.7 588 29.4
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 1.9e-49 200.3 585 29.4
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 1.9e-49 200.3 595 29.4
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 2.5e-49 199.9 585 28.4
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 1.2e-48 197.6 588 29.9
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 1.2e-48 197.6 590 28.0
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 3.6e-48 196.1 587 28.8
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 5.2e-47 192.2 585 29.1
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 6.7e-47 191.8 585 27.9
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 2.6e-46 189.9 582 28.5
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 5.7e-46 188.7 581 28.4
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 7.5e-46 188.3 584 27.4
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 9.7e-46 188.0 591 28.9
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 2.8e-45 186.4 590 28.5
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 4.8e-45 185.7 649 26.7
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 6.3e-45 185.3 585 27.4
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 2.4e-44 183.3 587 28.4
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 5.3e-44 182.2 586 27.8
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 5.3e-44 182.2 586 27.8
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 7.0e-44 181.8 589 27.8
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 2.0e-43 180.3 584 28.1
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 2.7e-43 179.9 583 27.3
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 3.5e-43 179.5 583 28.6
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 4.5e-43 179.1 583 28.8
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 4.5e-43 179.1 583 29.0
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 4.5e-43 179.1 583 27.1
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 4.5e-43 179.1 589 26.0
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 5.9e-43 178.7 583 28.5
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 7.7e-43 178.3 587 27.4
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 1.0e-42 177.9 585 27.5
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 8.5e-42 174.9 583 26.9
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 1.9e-41 173.7 543 27.1
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 4.2e-41 172.6 609 25.3
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 9.4e-41 171.4 589 27.5
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 1.2e-40 171.0 581 26.5
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 1.2e-40 171.0 581 26.5
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 3.6e-40 169.5 588 25.9
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 3.6e-40 169.5 642 26.2
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 3.6e-40 169.5 587 26.2
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.0e-39 166.4 102 82.4
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 6.8e-39 165.2 581 26.2
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 3.4e-38 162.9 581 26.0
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 3.4e-38 162.9 587 24.7
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 4.4e-38 162.5 588 26.2
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 7.5e-38 161.8 586 25.4
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 1.7e-37 160.6 595 26.4
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 2.2e-37 160.2 622 25.7
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 4.8e-37 159.1 590 25.6
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 4.8e-37 159.1 587 26.2
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 8.3e-37 158.3 388 34.3
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 1.8e-36 157.1 589 26.0
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 9.1e-36 154.8 590 25.4
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 2.7e-35 153.3 582 25.6
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 4.5e-35 152.5 588 26.0
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 4.5e-35 152.5 585 25.1
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 2.9e-34 149.8 489 27.0
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 5.0e-34 149.1 588 25.7
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 5.5e-33 145.6 207 43.5
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 9.5e-33 144.8 582 25.8
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 9.5e-33 144.8 206 43.7
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 2.1e-32 143.7 609 26.1
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 6.1e-32 142.1 124 54.0
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 8.0e-32 141.7 477 26.6
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.0e-31 141.4 608 23.7
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 1.4e-31 141.0 123 58.5
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 1.8e-31 140.6 551 24.5
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 4.4e-30 136.0 218 39.4
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 7.5e-30 135.2 217 39.6
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 9.8e-30 134.8 590 24.4
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 1.4e-28 131.0 625 23.7
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 1.8e-28 130.6 106 58.5
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 3.1e-28 129.8 109 56.9
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 9.2e-28 128.3 106 56.6
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 4.5e-27 125.9 605 23.8
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 6.6e-26 122.1 113 54.9
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 3.3e-25 119.8 117 51.3
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.2e-24 117.9 84 64.3
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 2.8e-24 116.7 126 47.6
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 6.1e-24 115.5 95 61.1
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.9e-21 106.7 150 44.0
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 5.4e-20 102.4 166 42.2
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 9.2e-20 101.7 91 59.3
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 3.5e-19 99.8 121 43.8
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 4.6e-19 99.4 304 29.3
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 4.6e-19 99.4 205 32.2
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 1.7e-18 97.4 62 79.0
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 1.1e-17 94.7 111 45.9
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 5.2e-15 85.9 396 23.2
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 5.2e-15 85.9 126 35.7
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 6.8e-15 85.5 88 48.9
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 2.2e-13 80.5 73 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 7.0e-12 75.5 125 35.2
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 3.5e-11 73.2 125 34.4
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 4.6e-11 72.8 112 37.5
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 1.5e-09 67.8 110 34.5
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 2.5e-09 67.0 43 65.1
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 2.5e-09 67.0 59 57.6


User provided reference genes

Program Settings