Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 0.0e+00 1092.4 576 100.0
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 4.0e-254 881.3 578 79.8
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 5.0e-249 864.4 578 78.0
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 6.8e-238 827.4 580 75.7
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.7e-236 822.8 578 75.8
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 4.5e-189 665.2 585 63.2
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 4.2e-179 632.1 607 57.3
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 5.1e-177 625.2 587 57.1
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 8.7e-177 624.4 611 56.3
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 2.5e-176 622.9 537 60.9
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 4.3e-176 622.1 620 57.1
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 1.1e-174 617.5 623 57.1
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.4e-174 617.1 607 57.8
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 9.0e-166 587.8 528 59.5
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 4.6e-162 575.5 573 57.2
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 3.0e-161 572.8 636 51.3
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 3.7e-159 565.8 530 58.5
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 5.3e-158 562.0 597 56.1
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.3e-156 557.4 610 52.3
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 1.7e-156 557.0 609 54.8
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.2e-155 552.4 549 54.8
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.2e-155 552.4 549 54.8
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 4.2e-155 552.4 538 55.4
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 6.7e-153 545.0 586 53.4
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 5.7e-152 542.0 564 53.5
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.7e-151 540.4 554 54.5
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 3.1e-150 536.2 537 55.3
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 1.5e-149 533.9 655 47.3
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 4.5e-149 532.3 642 49.1
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 7.7e-149 531.6 625 50.1
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.0e-148 531.2 672 48.1
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.3e-148 530.8 667 48.9
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 5.0e-148 528.9 558 53.2
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 4.2e-147 525.8 622 50.3
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 9.4e-147 524.6 672 47.6
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 6.1e-146 521.9 627 49.8
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 8.8e-145 518.1 583 52.8
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 2.2e-143 513.5 563 52.4
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 4.8e-143 512.3 566 51.9
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.1e-142 511.1 558 51.6
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.8e-142 510.4 709 43.9
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 3.1e-142 509.6 683 46.1
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 3.1e-142 509.6 740 43.4
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 7.0e-142 508.4 569 51.5
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 9.1e-142 508.1 546 51.8
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 2.2e-140 503.4 631 47.4
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 6.5e-140 501.9 744 44.2
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 8.5e-140 501.5 596 49.0
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.9e-139 500.4 692 47.1
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 4.2e-139 499.2 644 47.5
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.6e-138 497.3 565 51.0
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 2.1e-138 496.9 632 47.5
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 4.7e-138 495.7 561 51.5
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.4e-137 494.2 549 50.8
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 1.8e-137 493.8 617 47.6
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 5.2e-137 492.3 607 48.1
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.2e-136 491.1 645 46.7
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.4e-136 489.6 624 47.1
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 4.4e-136 489.2 555 50.5
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 4.4e-136 489.2 699 44.2
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 9.7e-136 488.0 565 48.3
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 1.3e-135 487.6 710 42.7
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 1.7e-135 487.3 649 45.8
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.7e-135 487.3 634 49.5
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.4e-134 484.2 582 48.8
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 2.4e-134 483.4 630 46.3
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 4.1e-134 482.6 715 41.8
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 7.7e-133 478.4 651 45.0
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 8.5e-132 474.9 582 47.9
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.1e-131 474.6 648 45.4
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 1.5e-131 474.2 638 47.5
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 2.5e-131 473.4 642 45.8
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 3.2e-131 473.0 649 45.0
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 4.2e-131 472.6 562 48.6
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 9.4e-131 471.5 775 40.0
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 2.7e-130 469.9 649 45.3
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 3.6e-130 469.5 534 49.4
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 5.7e-128 462.2 512 51.6
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.8e-126 457.2 684 43.6
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 5.9e-125 452.2 437 58.8
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 5.9e-125 452.2 569 45.0
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 1.0e-124 451.4 685 41.5
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 5.0e-124 449.1 688 43.3
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 6.6e-124 448.7 672 43.9
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 7.2e-123 445.3 773 40.1
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 7.2e-123 445.3 606 44.1
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.2e-122 444.5 751 39.4
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 8.0e-122 441.8 698 39.8
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 6.8e-121 438.7 729 39.6
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.7e-119 434.1 576 47.0
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 5.0e-116 422.5 740 39.6
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 5.8e-112 409.1 426 56.1
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 2.2e-111 407.1 692 38.7
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 2.0e-109 400.6 837 34.3
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 7.8e-109 398.7 499 46.3
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 1.2e-101 374.8 730 35.1
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 1.0e-100 371.7 550 42.5
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 8.6e-100 368.6 454 49.3
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.6e-99 365.9 202 88.1
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 2.1e-98 364.0 458 48.7
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.6e-96 357.1 281 66.2
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 7.3e-91 339.0 234 72.2
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 1.4e-81 308.1 210 75.7
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 6.4e-79 299.3 256 59.4
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.6e-77 293.1 477 38.8
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.4e-73 281.6 477 37.5
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.5e-72 276.6 470 38.1
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 1.0e-68 265.4 685 31.2
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 5.1e-68 263.1 199 66.8
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.5e-67 261.5 218 60.6
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 3.1e-65 253.8 748 29.3
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 7.6e-64 249.2 220 60.9
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 3.8e-63 246.9 525 34.5
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 6.7e-60 236.1 233 55.4
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.0e-48 198.0 174 58.0
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 2.2e-42 177.9 195 43.6
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 3.7e-42 177.2 226 46.9
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 3.1e-41 174.1 139 65.5
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 8.5e-31 139.4 304 33.9
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 3.2e-30 137.5 205 39.0
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.1e-29 134.8 232 37.5
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 2.7e-29 134.4 194 40.7
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 4.7e-29 133.7 166 46.4
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 7.5e-27 126.3 201 38.8
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 7.5e-27 126.3 201 38.8
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 6.1e-21 106.7 150 40.7
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 6.8e-20 103.2 142 41.5
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 2.0e-19 101.7 102 55.9
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.2e-18 98.2 68 66.2
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 8.3e-18 96.3 97 50.5
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 2.9e-15 87.8 134 41.8
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 3.6e-13 80.9 107 43.0
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 4.7e-13 80.5 49 77.6
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 1.5e-11 75.5 48 75.0
AL6G31480 Arabidopsis lyrata HOM05D006752 ORTHO05D008597 1.1e-09 69.3 186 29.6
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.1e-09 69.3 74 51.4
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.4e-09 68.9 61 54.1
Thhalv10013545m.g Eutrema salsugineum HOM05D006752 ORTHO05D008597 1.8e-09 68.6 160 31.2
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 2.4e-09 68.2 107 37.4
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 9.2e-09 66.2 115 39.1
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 9.2e-09 66.2 136 36.8
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.2e-08 65.9 81 35.8
AT5G19950 Arabidopsis thaliana HOM05D006752 ORTHO05D008597 2.0e-08 65.1 186 28.5
BcaB08g36551 Brassica carinata HOM05D006752 ORTHO05D008597 2.7e-08 64.7 188 28.7
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 2.7e-08 64.7 131 34.4
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 3.5e-08 64.3 49 69.4
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 5.9e-08 63.5 139 32.4
Aa31LG8G9350 Aethionema arabicum HOM05D006752 ORTHO05D008597 2.3e-07 61.6 151 29.8
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 2.9e-07 61.2 61 49.2
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 3.8e-07 60.8 117 32.5
Mapoly0040s0028 Marchantia polymorpha HOM05D006752 ORTHO05D008597 6.6e-07 60.1 251 26.7
BcaC04g19401 Brassica carinata HOM05D006752 ORTHO05D008597 1.5e-06 58.9 237 26.6
C09p56100 Brassica napus HOM05D006752 ORTHO05D008597 1.5e-06 58.9 237 26.6
BolC9t58477H Brassica oleracea HOM05D006752 ORTHO05D008597 1.5e-06 58.9 237 26.6
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.5e-06 58.9 120 31.7
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.9e-06 58.5 135 32.6
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.9e-06 58.5 133 31.6
Sp6g24430 Schrenkiella parvula HOM05D006752 ORTHO05D008597 2.5e-06 58.2 237 23.6
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 2.5e-06 58.2 160 25.6
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 4.3e-06 57.4 112 38.4
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 4.3e-06 57.4 112 38.4
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 5.6e-06 57.0 151 28.5
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 7.3e-06 56.6 117 32.5
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 7.3e-06 56.6 289 23.5
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 9.5e-06 56.2 122 32.0


User provided reference genes

Program Settings