Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_16618 Corchorus olitorius HOM05D002077 ORTHO05D000818 2.3e-173 612.1 295 100.0
COL.COLO4_23036 Corchorus olitorius HOM05D037256 ORTHO05D000818 1.9e-26 124.0 286 33.6
Atru.chr2.2937 Acer truncatum HOM05D002077 ORTHO05D000818 8.0e-25 118.6 266 31.6
CSS0029340 Camellia sinensis var. sinensis HOM05D011823 ORTHO05D000818 3.0e-24 116.7 251 29.9
COL.COLO4_32276 Corchorus olitorius HOM05D037256 ORTHO05D000818 2.6e-23 113.6 207 36.2
Atru.chr2.2914 Acer truncatum HOM05D002077 ORTHO05D000818 1.7e-22 110.9 188 34.6
RcHm_v2.0_Chr1g0377111 Rosa chinensis HOM05D002077 ORTHO05D000818 2.0e-20 104.0 237 30.8
COL.COLO4_28668 Corchorus olitorius HOM05D002077 ORTHO05D000818 2.6e-20 103.6 122 46.7
Lalb_Chr06g0161071 Lupinus albus HOM05D002077 ORTHO05D000818 4.5e-20 102.8 249 30.9
TPR.G14327 Trifolium pratense HOM05D002077 ORTHO05D000818 1.0e-19 101.7 248 29.8
arahy.Tifrunner.gnm1.ann1.KCRD8X Arachis hypogaea HOM05D002077 ORTHO05D000818 2.2e-19 100.5 242 30.6
FvH4_7g29350 Fragaria vesca HOM05D002077 ORTHO05D000818 2.2e-19 100.5 240 30.0
FAN06G1288 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.2e-19 100.5 240 30.0
FAN06G1718 Fragaria x ananassa HOM05D002077 ORTHO05D006729 2.2e-19 100.5 240 30.0
Glyma.20G157500 Glycine max HOM05D002077 ORTHO05D000818 2.2e-19 100.5 242 31.0
PGSC0003DMG401014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 3.8e-19 99.8 254 29.9
Eucgr.A02798 Eucalyptus grandis HOM05D002077 ORTHO05D000818 6.5e-19 99.0 244 28.7
arahy.Tifrunner.gnm1.ann1.6H6H67 Arachis hypogaea HOM05D002077 ORTHO05D000818 1.9e-18 97.4 242 29.8
FAN01G1848 Fragaria x ananassa HOM05D002077 ORTHO05D000818 1.9e-18 97.4 240 29.6
Sopen03g004750 Solanum pennellii HOM05D002077 ORTHO05D000818 1.9e-18 97.4 255 30.2
Duzib205G0590 Durio zibethinus HOM05D002077 ORTHO05D000818 2.5e-18 97.1 237 31.2
Prupe.2G293200 Prunus persica HOM05D002077 ORTHO05D000818 2.5e-18 97.1 240 29.6
Glyma.10G236900 Glycine max HOM05D002077 ORTHO05D000818 4.2e-18 96.3 239 30.5
Gorai.006G048100 Gossypium raimondii HOM05D002077 ORTHO05D000818 4.2e-18 96.3 247 29.6
QL09p014520 Quercus lobata HOM05D002077 ORTHO05D000818 4.2e-18 96.3 237 29.5
FAN03G1828 Fragaria x ananassa HOM05D002077 ORTHO05D006729 5.5e-18 95.9 240 30.0
Gohir.A09G041000 Gossypium hirsutum HOM05D002077 ORTHO05D000818 5.5e-18 95.9 247 29.6
Ca_10779_v3 Cicer arietinum L. HOM05D002077 ORTHO05D000818 7.2e-18 95.5 242 30.2
Medtr1g100697 Medicago truncatula HOM05D002077 ORTHO05D000818 9.4e-18 95.1 242 29.3
Medtr1g100707 Medicago truncatula HOM05D002077 ORTHO05D000818 9.4e-18 95.1 242 29.3
Solyc03g025930.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 9.4e-18 95.1 255 29.8
COL.COLO4_09460 Corchorus olitorius HOM05D036706 ORTHO05D000818 1.2e-17 94.7 154 38.3
Ciclev10005501m.g Citrus clementina HOM05D002077 ORTHO05D000818 1.6e-17 94.4 242 30.2
Gohir.D09G041900 Gossypium hirsutum HOM05D002077 ORTHO05D000818 1.6e-17 94.4 242 29.8
Peaxi162Scf00915g00025 Petunia axillaris HOM05D002077 ORTHO05D000818 2.1e-17 94.0 250 28.4
Phvul.007G069000 Phaseolus vulgaris HOM05D002077 ORTHO05D000818 2.1e-17 94.0 247 30.0
SalBow2G3420 Salvia bowleyana HOM05D002077 ORTHO05D000818 2.1e-17 94.0 243 28.4
ECA232G3548 Erigeron canadensis HOM05D002077 ORTHO05D000818 2.7e-17 93.6 242 29.8
Nitab4.5_0000716g0180 Nicotiana tabacum HOM05D002077 ORTHO05D000818 2.7e-17 93.6 247 28.7
Rhsim03G0179600 Rhododendron simsii HOM05D002077 ORTHO05D000818 2.7e-17 93.6 242 29.3
Cpa.g.sc107.40 Carica papaya HOM05D002077 ORTHO05D000818 3.6e-17 93.2 249 28.5
Lj5g0027705 Lotus japonicus HOM05D002077 ORTHO05D000818 3.6e-17 93.2 242 27.3
Dinv28453 Davidia involucrata HOM05D002077 ORTHO05D000818 6.1e-17 92.4 243 30.5
PGSC0003DMG402014331 Solanum tuberosum HOM05D002077 ORTHO05D000818 6.1e-17 92.4 252 29.0
VMungo0720G0161 Vigna mungo HOM05D002077 ORTHO05D000818 6.1e-17 92.4 248 29.8
Aa31LG4G17390 Aethionema arabicum HOM05D002077 ORTHO05D000818 8.0e-17 92.0 249 27.3
TWI14G1216 Tripterygium wilfordii HOM05D002077 ORTHO05D000818 8.0e-17 92.0 242 28.9
Nitab4.5_0003365g0050 Nicotiana tabacum HOM05D002077 ORTHO05D000818 1.4e-16 91.3 247 28.3
COL.COLO4_14296 Corchorus olitorius HOM05D002077 ORTHO05D000818 1.8e-16 90.9 242 30.6
Manes.06G146400 Manihot esculenta HOM05D002077 ORTHO05D000818 1.8e-16 90.9 246 29.3
Solyc03g025920.4 Solanum lycopersicum HOM05D002077 ORTHO05D000818 1.8e-16 90.9 247 28.3
Sopen03g004730 Solanum pennellii HOM05D002077 ORTHO05D000818 1.8e-16 90.9 247 28.3
Migut.F01126 Erythranthe guttata HOM05D002077 ORTHO05D000818 3.0e-16 90.1 240 27.5
Thecc.03G175300 Theobroma cacao HOM05D002077 ORTHO05D000818 3.0e-16 90.1 244 29.1
Eucgr.A02799 Eucalyptus grandis HOM05D002077 ORTHO05D000818 6.8e-16 89.0 237 27.0
Lj8A25T67 Lonicera japonica HOM05D002077 ORTHO05D000818 6.8e-16 89.0 261 28.7
Actinidia34102 Actinidia chinensis HOM05D002077 ORTHO05D000818 1.2e-15 88.2 237 29.5
Hma1.2p1_3140F.1_g333050 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 1.2e-15 88.2 240 27.1
PGSC0003DMG403014333 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.2e-15 88.2 247 27.9
BcaC09g49912 Brassica carinata HOM05D002077 ORTHO05D000818 1.5e-15 87.8 236 28.0
BolC1t03074H Brassica oleracea HOM05D002077 ORTHO05D000818 1.5e-15 87.8 236 28.0
Cc02_g03120 Coffea canephora HOM05D002077 ORTHO05D000818 2.0e-15 87.4 237 27.8
BcaB05g22980 Brassica carinata HOM05D002077 ORTHO05D000818 2.6e-15 87.0 236 28.0
A01p25170 Brassica napus HOM05D002077 ORTHO05D000818 2.6e-15 87.0 236 28.0
BraA01t02425Z Brassica rapa HOM05D002077 ORTHO05D000818 2.6e-15 87.0 236 28.0
Lsat_1_v5_gn_2_131821 Lactuca sativa HOM05D002077 ORTHO05D000818 2.6e-15 87.0 236 28.4
Aqoxy7G02867 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 3.4e-15 86.7 252 27.8
C01p31370 Brassica napus HOM05D002077 ORTHO05D000818 3.4e-15 86.7 236 27.5
COL.COLO4_36569 Corchorus olitorius HOM05D002077 ORTHO05D000818 3.4e-15 86.7 251 25.5
AT3G48880 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 4.4e-15 86.3 242 27.7
DCAR_009358 Daucus carota HOM05D002077 ORTHO05D000818 4.4e-15 86.3 244 27.0
Aqoxy5G03957 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 5.7e-15 85.9 240 27.9
Aqoxy7G02866 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 5.7e-15 85.9 246 26.4
Thhalv10010519m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 5.7e-15 85.9 240 27.5
Hma1.2p1_2482F.1_g323020 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 5.7e-15 85.9 237 26.6
GSVIVG01010544001 Vitis vinifera HOM05D002077 ORTHO05D000818 5.7e-15 85.9 245 28.2
AL5G28390 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 9.7e-15 85.1 240 27.5
BcaB01g02690 Brassica carinata HOM05D002077 ORTHO05D000818 1.3e-14 84.7 309 25.9
HanXRQChr15g0495591 Helianthus annuus HOM05D002077 ORTHO05D000818 1.3e-14 84.7 242 28.5
PSO063G0361 Papaver somniferum HOM05D002077 ORTHO05D000818 1.3e-14 84.7 245 26.9
PGSC0003DMG400014329 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.3e-14 84.7 247 28.3
CAN.G913.3 Capsicum annuum HOM05D002077 ORTHO05D000818 1.7e-14 84.3 247 27.9
Psat6g199880 Pisum sativum HOM05D002077 ORTHO05D000818 1.7e-14 84.3 241 28.2
Sp5g13170 Schrenkiella parvula HOM05D002077 ORTHO05D000818 1.7e-14 84.3 237 27.0
BcaB01g02685 Brassica carinata HOM05D002077 ORTHO05D000818 2.2e-14 84.0 288 26.4
BcaB01g02687 Brassica carinata HOM05D002077 ORTHO05D000818 2.2e-14 84.0 288 26.4
BcaB01g02688 Brassica carinata HOM05D002077 ORTHO05D000818 2.2e-14 84.0 288 26.4
A07p34160 Brassica napus HOM05D002077 ORTHO05D000818 2.2e-14 84.0 246 27.2
PSO782G4919 Papaver somniferum HOM05D002077 ORTHO05D000818 2.2e-14 84.0 245 26.9
C03p36150 Brassica napus HOM05D002077 ORTHO05D000818 2.8e-14 83.6 283 26.9
BraA07t31041Z Brassica rapa HOM05D002077 ORTHO05D000818 4.8e-14 82.8 240 26.2
Carub.0005s1505 Capsella rubella HOM05D002077 ORTHO05D000818 4.8e-14 82.8 240 27.1
vmacro06694 Vaccinium macrocarpon HOM05D002077 ORTHO05D000818 6.3e-14 82.4 237 27.4
SGA_v2.0_scaffold10G05344 Striga asiatica HOM05D002077 ORTHO05D000818 8.3e-14 82.0 245 26.9
Atru.chr1.476 Acer truncatum HOM05D002077 ORTHO05D000818 1.1e-13 81.6 242 27.7
Aqoxy2G00158 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.1e-13 81.6 281 23.5
A03p29420 Brassica napus HOM05D002077 ORTHO05D000818 1.8e-13 80.9 284 25.4
BolC6t39178H Brassica oleracea HOM05D002077 ORTHO05D000818 1.8e-13 80.9 246 26.8
BraA03t12135Z Brassica rapa HOM05D002077 ORTHO05D000818 1.8e-13 80.9 284 25.4
Thhalv10022247m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.8e-13 80.9 246 26.4
TAR627G0443 Trochodendron aralioides HOM05D002077 ORTHO05D000818 3.1e-13 80.1 155 32.9
MBI18_g44743_MAGBIO Magnolia biondii HOM05D002077 ORTHO05D000818 4.1e-13 79.7 249 27.7
Solyc03g025940.3 Solanum lycopersicum HOM05D002077 ORTHO05D000818 4.1e-13 79.7 247 27.9
Aqoxy3G02725 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 5.3e-13 79.3 251 26.7
THA.LOC104824394 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 5.3e-13 79.3 242 26.4
C06p42610 Brassica napus HOM05D002077 ORTHO05D000818 7.0e-13 79.0 246 26.4
TAR636G1697 Trochodendron aralioides HOM05D002077 ORTHO05D000818 1.2e-12 78.2 250 26.4
CSS0043143 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 1.6e-12 77.8 244 25.8
Carub.0003s0214 Capsella rubella HOM05D002077 ORTHO05D000818 1.6e-12 77.8 240 25.4
Carub.0006s3064 Capsella rubella HOM05D002077 ORTHO05D000818 2.7e-12 77.0 268 26.5
CARHR157690 Cardamine hirsuta HOM05D002077 ORTHO05D000818 3.5e-12 76.6 240 26.2
HanXRQChr07g0207061 Helianthus annuus HOM05D002077 ORTHO05D000818 3.5e-12 76.6 244 25.0
Aqoxy1G03853 Aquilegia oxysepala HOM05D002077 ORTHO05D000818 4.5e-12 76.3 296 24.0
Os10g0502900 Oryza sativa ssp. japonica HOM05D002077 ORTHO05D000818 4.5e-12 76.3 247 25.9
AL6G46100 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 5.9e-12 75.9 277 25.3
Sp5g15070 Schrenkiella parvula HOM05D002077 ORTHO05D000818 5.9e-12 75.9 247 26.7
Sopen03g004760 Solanum pennellii HOM05D002077 ORTHO05D000818 5.9e-12 75.9 246 27.2
Hma1.2p1_2094F.1_g313920 Hydrangea macrophylla HOM05D002077 ORTHO05D000818 7.7e-12 75.5 230 26.5
Potri.015G139700 Populus trichocarpa HOM05D002077 ORTHO05D000818 7.7e-12 75.5 237 26.6
Aqoxy2G04051 Aquilegia oxysepala HOM05D001705 ORTHO05D002725 1.0e-11 75.1 245 26.1
PGSC0003DMG400030222 Solanum tuberosum HOM05D002077 ORTHO05D000818 1.7e-11 74.3 247 27.1
Ciclev10021301m.g Citrus clementina HOM05D002077 ORTHO05D000818 2.9e-11 73.6 243 24.7
Thecc.07G038400 Theobroma cacao HOM05D002077 ORTHO05D000818 3.8e-11 73.2 250 24.8
Cfa000242 Carpinus fangiana HOM05D011823 ORTHO05D014382 5.0e-11 72.8 223 27.4
CiPaw.03G105400 Carya illinoinensis HOM05D002077 ORTHO05D000818 5.0e-11 72.8 210 28.1
C08p23850 Brassica napus HOM05D002077 ORTHO05D000818 6.5e-11 72.4 244 26.6
AL6G46110 Arabidopsis lyrata HOM05D002077 ORTHO05D000818 8.5e-11 72.0 240 25.0
BcaC07g39363 Brassica carinata HOM05D002077 ORTHO05D000818 8.5e-11 72.0 244 27.0
Potri.012G137700 Populus trichocarpa HOM05D002077 ORTHO05D000818 8.5e-11 72.0 236 26.7
Actinidia27496 Actinidia chinensis HOM05D002273 ORTHO05D000818 1.5e-10 71.2 254 26.8
MBI02_g25002_MAGBIO Magnolia biondii HOM05D002273 ORTHO05D000818 1.5e-10 71.2 254 24.8
Hund11495 Selenicereus undatus HOM05D002077 ORTHO05D000818 1.9e-10 70.9 230 26.5
AT4G11580 Arabidopsis thaliana HOM05D002077 ORTHO05D000818 2.5e-10 70.5 274 26.3
THA.LOC104806991 Tarenaya hassleriana HOM05D002077 ORTHO05D000818 2.5e-10 70.5 243 24.7
Aa31LG11G3080 Aethionema arabicum HOM05D002077 ORTHO05D000818 3.2e-10 70.1 260 25.8
Sabra15G0150400 Salix brachista HOM05D002077 ORTHO05D000818 4.2e-10 69.7 237 25.3
BcaC03g16340 Brassica carinata HOM05D002077 ORTHO05D000818 5.5e-10 69.3 289 26.0
ECA238G3926 Erigeron canadensis HOM05D002077 ORTHO05D000818 5.5e-10 69.3 248 24.2
BcaC08g46173 Brassica carinata HOM05D002077 ORTHO05D000818 7.2e-10 68.9 240 25.8
Aqoxy6G00702 Aquilegia oxysepala HOM05D010647 ORTHO05D012576 9.4e-10 68.6 222 26.1
BcaB01g02689 Brassica carinata HOM05D002077 ORTHO05D000818 1.6e-09 67.8 302 24.8
Migut.H01341 Erythranthe guttata HOM05D000710 ORTHO05D000336 1.6e-09 67.8 257 22.2
QL09p041417 Quercus lobata HOM05D002077 ORTHO05D000818 2.1e-09 67.4 238 25.6
Manes.02G024600 Manihot esculenta HOM05D002077 ORTHO05D000818 2.7e-09 67.0 241 23.7
Actinidia02878 Actinidia chinensis HOM05D002273 ORTHO05D000818 3.6e-09 66.6 260 25.4
CSS0014052 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 6.1e-09 65.9 154 28.6
CSS0043009 Camellia sinensis var. sinensis HOM05D002077 ORTHO05D000818 8.0e-09 65.5 225 26.2
TAR624G0446 Trochodendron aralioides HOM05D010647 ORTHO05D012576 8.0e-09 65.5 242 25.6
C03p40390 Brassica napus HOM05D002077 ORTHO05D000818 1.0e-08 65.1 183 26.8
vmacro15545 Vaccinium macrocarpon HOM05D002273 ORTHO05D000818 1.0e-08 65.1 261 24.9
Aqoxy5G01533 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 1.4e-08 64.7 290 23.4
arahy.Tifrunner.gnm1.ann1.ZTL1PV Arachis hypogaea HOM05D000710 ORTHO05D000336 1.4e-08 64.7 238 24.8
Thhalv10015761m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 1.4e-08 64.7 238 23.9
HPP92_013985 Vanilla planifolia HOM05D002273 ORTHO05D000818 1.4e-08 64.7 233 22.3
COL.COLO4_09390 Corchorus olitorius HOM05D037256 ORTHO05D162004 1.8e-08 64.3 111 38.7
BolC3t16304H Brassica oleracea HOM05D002077 ORTHO05D000818 2.3e-08 63.9 183 26.2
BolC4t26591H Brassica oleracea HOM05D000710 ORTHO05D000336 3.0e-08 63.5 242 24.0
CSS0027661 Camellia sinensis var. sinensis HOM05D002273 ORTHO05D000818 4.0e-08 63.2 251 23.1
Thhalv10029451m.g Eutrema salsugineum HOM05D002077 ORTHO05D000818 4.0e-08 63.2 241 23.7
Lsat_1_v5_gn_6_60060 Lactuca sativa HOM05D002273 ORTHO05D000818 4.0e-08 63.2 258 26.0
QL12p002854 Quercus lobata HOM05D002077 ORTHO05D000818 4.0e-08 63.2 237 24.1
Aqoxy2G00144 Aquilegia oxysepala HOM05D011823 ORTHO05D014382 5.2e-08 62.8 247 22.7
BcaC02g08830 Brassica carinata HOM05D000710 ORTHO05D000336 5.2e-08 62.8 242 23.6
C02p41640 Brassica napus HOM05D002077 ORTHO05D000818 5.2e-08 62.8 188 26.1
C04p49970 Brassica napus HOM05D000710 ORTHO05D000336 5.2e-08 62.8 242 23.6
BolC2t10180H Brassica oleracea HOM05D002077 ORTHO05D000818 5.2e-08 62.8 188 26.1
arahy.Tifrunner.gnm1.ann1.MDM23I Arachis hypogaea HOM05D002764 ORTHO05D002960 6.8e-08 62.4 241 23.7
BolC9t54528H Brassica oleracea HOM05D002077 ORTHO05D000818 6.8e-08 62.4 239 23.0
Dinv25029 Davidia involucrata HOM05D002273 ORTHO05D000818 1.2e-07 61.6 256 24.6
Nn1g06062 Nelumbo nucifera HOM05D002273 ORTHO05D000818 1.2e-07 61.6 246 23.6
arahy.Tifrunner.gnm1.ann1.T21N8D Arachis hypogaea HOM05D000710 ORTHO05D000336 1.5e-07 61.2 231 22.5
TAR626G1200 Trochodendron aralioides HOM05D002273 ORTHO05D000818 2.0e-07 60.8 247 23.9
AUR62014304 Chenopodium quinoa HOM05D010647 ORTHO05D012576 4.4e-07 59.7 220 25.0
HPP92_018690 Vanilla planifolia HOM05D002273 ORTHO05D000818 4.4e-07 59.7 234 22.6
GSVIVG01022452001 Vitis vinifera HOM05D002273 ORTHO05D000818 4.4e-07 59.7 250 24.0
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 7.5e-07 58.9 139 25.9
Dinv27227 Davidia involucrata HOM05D002273 ORTHO05D000818 9.8e-07 58.5 267 22.1
A04p18450 Brassica napus HOM05D002077 ORTHO05D000818 1.3e-06 58.2 263 23.2
Haze_06779 Corylus avellana HOM05D002077 ORTHO05D000818 1.7e-06 57.8 52 48.1
HPP92_018672 Vanilla planifolia HOM05D002273 ORTHO05D000818 1.7e-06 57.8 234 22.2
Nn1g01424 Nelumbo nucifera HOM05D002077 ORTHO05D000818 2.8e-06 57.0 159 28.3
Atru.chr2.2845 Acer truncatum HOM05D002077 ORTHO05D000818 3.7e-06 56.6 61 45.9
BcaB03g15180 Brassica carinata HOM05D002077 ORTHO05D000818 3.7e-06 56.6 236 24.2
C03p40430 Brassica napus HOM05D002077 ORTHO05D000818 4.8e-06 56.2 158 24.7
HanXRQChr02g0039861 Helianthus annuus HOM05D000710 ORTHO05D000336 8.3e-06 55.5 238 21.0


User provided reference genes

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