Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_15645 Corchorus olitorius HOM05D003904 ORTHO05D004378 2.8e-71 271.9 147 100.0
Thecc.01G222100 Theobroma cacao HOM05D003904 ORTHO05D004378 1.4e-57 226.5 148 86.5
Duzib211G0008 Durio zibethinus HOM05D003904 ORTHO05D004378 1.1e-56 223.4 148 85.1
Duzib133G0063 Durio zibethinus HOM05D003904 ORTHO05D004378 2.2e-55 219.2 148 81.8
Duzib138G1906 Durio zibethinus HOM05D003904 ORTHO05D004378 3.8e-52 208.4 149 79.9
Gohir.A07G200400 Gossypium hirsutum HOM05D003904 ORTHO05D004378 8.5e-52 207.2 149 78.5
Gohir.A07G200150 Gossypium hirsutum HOM05D003904 ORTHO05D004378 7.9e-50 200.7 147 78.2
Gorai.001G233000 Gossypium raimondii HOM05D003904 ORTHO05D004378 1.1e-48 196.8 149 76.5
Gohir.D07G206700 Gossypium hirsutum HOM05D003904 ORTHO05D004378 4.4e-48 194.9 149 75.8
Manes.12G046500 Manihot esculenta HOM05D003904 ORTHO05D004378 5.7e-48 194.5 148 73.6
Ciclev10022271m.g Citrus clementina HOM05D003904 ORTHO05D004378 1.3e-47 193.4 148 75.0
Manes.13G047800 Manihot esculenta HOM05D003904 ORTHO05D004378 2.0e-45 186.0 149 74.5
Gohir.D07G206500 Gossypium hirsutum HOM05D003904 ORTHO05D004378 4.5e-45 184.9 154 72.1
Gorai.001G232800 Gossypium raimondii HOM05D003904 ORTHO05D004378 5.0e-44 181.4 154 70.8
Atru.chr6.1416 Acer truncatum HOM05D003904 ORTHO05D004378 4.2e-43 178.3 148 70.9
Prupe.8G200300 Prunus persica HOM05D003904 ORTHO05D004378 8.0e-42 174.1 148 66.2
Dinv19185 Davidia involucrata HOM05D003904 ORTHO05D004378 1.0e-41 173.7 152 67.1
Sabra02G0186200 Salix brachista HOM05D003904 ORTHO05D004378 1.8e-41 172.9 149 69.1
Potri.002G244700 Populus trichocarpa HOM05D003904 ORTHO05D004378 3.0e-41 172.2 146 66.4
TWI18G1339 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 3.9e-41 171.8 148 70.3
Dinv12666 Davidia involucrata HOM05D003904 ORTHO05D004378 2.6e-40 169.1 152 65.1
Nn3g20007 Nelumbo nucifera HOM05D003904 ORTHO05D004378 3.3e-40 168.7 151 66.9
CANSAT01G1918 Cannabis sativa HOM05D003904 ORTHO05D004378 4.1e-38 161.8 147 63.3
CANSAT01G1788 Cannabis sativa HOM05D003904 ORTHO05D004378 5.3e-38 161.4 147 63.3
MD05G1172900 Malus domestica HOM05D003904 ORTHO05D004378 9.1e-38 160.6 148 65.5
QL09p052136 Quercus lobata HOM05D003904 ORTHO05D004378 9.1e-38 160.6 143 65.0
THA.LOC104818966 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 1.6e-37 159.8 144 64.6
CSS0000113 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 2.0e-37 159.5 153 62.1
Sabra14G0142300 Salix brachista HOM05D003904 ORTHO05D004378 2.0e-37 159.5 131 70.2
Nn1g07928 Nelumbo nucifera HOM05D003904 ORTHO05D004378 3.5e-37 158.7 151 63.6
QL09p053006 Quercus lobata HOM05D003904 ORTHO05D004378 3.5e-37 158.7 143 64.3
CiPaw.03G146900 Carya illinoinensis HOM05D003904 ORTHO05D004378 4.5e-37 158.3 149 65.8
Carub.0003s0669 Capsella rubella HOM05D003904 ORTHO05D004378 7.7e-37 157.5 146 63.0
arahy.Tifrunner.gnm1.ann1.P0KJIP Arachis hypogaea HOM05D003904 ORTHO05D004378 1.0e-36 157.1 149 63.8
Potri.014G190800 Populus trichocarpa HOM05D003904 ORTHO05D004378 1.0e-36 157.1 147 63.3
Actinidia09474 Actinidia chinensis HOM05D003904 ORTHO05D004378 2.2e-36 156.0 150 64.0
TWI75G0190 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 2.2e-36 156.0 147 67.3
Cfa002841 Carpinus fangiana HOM05D003904 ORTHO05D004378 2.9e-36 155.6 147 63.9
Thhalv10021536m.g Eutrema salsugineum HOM05D003904 ORTHO05D004378 2.9e-36 155.6 147 61.9
Eucgr.K02144 Eucalyptus grandis HOM05D003904 ORTHO05D004378 3.8e-36 155.2 146 61.6
GSVIVG01038356001 Vitis vinifera HOM05D003904 ORTHO05D004378 3.8e-36 155.2 152 65.8
Cc01_g16830 Coffea canephora HOM05D003904 ORTHO05D004378 5.0e-36 154.8 142 61.3
RcHm_v2.0_Chr6g0284331 Rosa chinensis HOM05D003904 ORTHO05D004378 8.5e-36 154.1 147 65.3
Psat4g200440 Pisum sativum HOM05D003904 ORTHO05D004378 2.5e-35 152.5 147 60.5
CSS0026054 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 3.2e-35 152.1 151 61.6
AL3G18420 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 4.2e-35 151.8 146 61.6
THA.LOC104802662 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 4.2e-35 151.8 150 61.3
Actinidia23715 Actinidia chinensis HOM05D003904 ORTHO05D004378 5.5e-35 151.4 152 61.8
BolC5t34670H Brassica oleracea HOM05D003904 ORTHO05D004378 5.5e-35 151.4 150 60.0
TAR362G1128 Trochodendron aralioides HOM05D003904 ORTHO05D004378 5.5e-35 151.4 155 62.6
CSS0042014 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 7.2e-35 151.0 151 61.6
CiPaw.04G104300 Carya illinoinensis HOM05D003904 ORTHO05D004378 7.2e-35 151.0 148 62.8
AT3G07170 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 9.4e-35 150.6 146 60.3
Ca_23234_v3 Cicer arietinum L. HOM05D003904 ORTHO05D004378 9.4e-35 150.6 145 60.7
Sp3g06110 Schrenkiella parvula HOM05D003904 ORTHO05D004378 1.2e-34 150.2 147 61.2
Lj2C1127G11 Lonicera japonica HOM05D003904 ORTHO05D004378 2.7e-34 149.1 152 61.8
BcaC05g29749 Brassica carinata HOM05D003904 ORTHO05D004378 4.7e-34 148.3 125 64.8
Actinidia31468 Actinidia chinensis HOM05D003904 ORTHO05D004378 6.1e-34 147.9 163 57.1
C05p60200 Brassica napus HOM05D003904 ORTHO05D004378 6.1e-34 147.9 138 60.9
Medtr8g012995 Medicago truncatula HOM05D003904 ORTHO05D004378 8.0e-34 147.5 148 58.8
CsaV3_7G026020 Cucumis sativus L. HOM05D003904 ORTHO05D004378 1.4e-33 146.7 149 59.7
Lalb_Chr12g0209941 Lupinus albus HOM05D003904 ORTHO05D004378 2.3e-33 146.0 145 57.9
MELO3C021054.2 Cucumis melo HOM05D003904 ORTHO05D004378 3.0e-33 145.6 149 59.7
THA.LOC104822497 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 3.0e-33 145.6 153 58.8
BcaC05g29846 Brassica carinata HOM05D003904 ORTHO05D004378 4.0e-33 145.2 134 61.2
ClCG09G008850 Citrullus lanatus HOM05D003904 ORTHO05D004378 4.0e-33 145.2 131 64.1
MSTRG.20964 Avicennia marina HOM05D003904 ORTHO05D004378 5.2e-33 144.8 152 57.2
Phvul.010G020800 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 5.2e-33 144.8 148 59.5
Sc17g0002200 Simmondsia chinensis HOM05D003904 ORTHO05D004378 5.2e-33 144.8 152 61.8
TWI36G1515 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 6.7e-33 144.4 148 64.2
AUR62001117 Chenopodium quinoa HOM05D003904 ORTHO05D004378 8.8e-33 144.1 150 60.7
TPR.G17124 Trifolium pratense HOM05D003904 ORTHO05D004378 8.8e-33 144.1 145 58.6
AUR62016559 Chenopodium quinoa HOM05D003904 ORTHO05D004378 1.2e-32 143.7 150 60.7
FAN15G2255 Fragaria x ananassa HOM05D003904 ORTHO05D004378 1.2e-32 143.7 123 67.5
FAN27G1941 Fragaria x ananassa HOM05D003904 ORTHO05D004378 1.2e-32 143.7 123 67.5
PGSC0003DMG400017482 Solanum tuberosum HOM05D003904 ORTHO05D004378 1.2e-32 143.7 154 56.5
Glyma.03G064800 Glycine max HOM05D003904 ORTHO05D004378 1.5e-32 143.3 147 61.2
Hund05569 Selenicereus undatus HOM05D003904 ORTHO05D004378 2.0e-32 142.9 150 59.3
Solyc09g059620.4 Solanum lycopersicum HOM05D003904 ORTHO05D004378 3.3e-32 142.1 154 56.5
EL10Ac7g17872 Beta vulgaris HOM05D003904 ORTHO05D004378 4.4e-32 141.7 151 60.3
Glyma.08G349900 Glycine max HOM05D003904 ORTHO05D004378 4.4e-32 141.7 146 56.8
Lj3g0009581 Lotus japonicus HOM05D003904 ORTHO05D004378 5.7e-32 141.4 150 58.7
Phvul.008G130000 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 5.7e-32 141.4 147 56.5
MD10G1161300 Malus domestica HOM05D003904 ORTHO05D004378 7.5e-32 141.0 148 60.1
MSTRG.18841 Avicennia marina HOM05D003904 ORTHO05D004378 9.7e-32 140.6 152 55.9
FvH4_2g18710 Fragaria vesca HOM05D003904 ORTHO05D004378 9.7e-32 140.6 147 61.9
Sopen09g022790 Solanum pennellii HOM05D003904 ORTHO05D004378 9.7e-32 140.6 154 56.5
Ah.08g214500 Amaranthus hybridus HOM05D003904 ORTHO05D004378 1.3e-31 140.2 153 59.5
PGR044G0663 Punica granatum HOM05D003904 ORTHO05D004378 1.3e-31 140.2 147 58.5
TAR636G3655 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.7e-31 139.8 153 60.8
Aa31LG5G17730 Aethionema arabicum HOM05D003904 ORTHO05D004378 2.8e-31 139.0 150 56.7
BraA05t22830Z Brassica rapa HOM05D003904 ORTHO05D004378 2.8e-31 139.0 140 60.0
Nitab4.5_0000345g0040 Nicotiana tabacum HOM05D003904 ORTHO05D004378 3.7e-31 138.7 154 55.8
FAN24G3335 Fragaria x ananassa HOM05D003904 ORTHO05D004378 4.8e-31 138.3 123 65.9
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 6.3e-31 137.9 153 60.8
Lalb_Chr07g0194271 Lupinus albus HOM05D003904 ORTHO05D004378 8.2e-31 137.5 147 57.8
Sed0012318 Sechium edule HOM05D003904 ORTHO05D004378 1.1e-30 137.1 148 60.1
Sc05g0002020 Simmondsia chinensis HOM05D003904 ORTHO05D004378 1.4e-30 136.7 159 57.2
Peaxi162Scf00238g00213 Petunia axillaris HOM05D003904 ORTHO05D004378 2.0e-29 132.9 151 53.6
Nitab4.5_0000045g0390 Nicotiana tabacum HOM05D003904 ORTHO05D004378 7.7e-29 131.0 145 55.9
Glyma.16G100600 Glycine max HOM05D003904 ORTHO05D004378 2.2e-28 129.4 149 54.4
Oeu037383.1 Olea europaea HOM05D003904 ORTHO05D004378 1.9e-27 126.3 156 55.1
Cpa.g.sc8.132 Carica papaya HOM05D003904 ORTHO05D004378 4.2e-27 125.2 113 65.5
Thhalv10004989m.g Eutrema salsugineum HOM05D003904 ORTHO05D004378 4.2e-27 125.2 148 52.7
HanXRQChr01g0015241 Helianthus annuus HOM05D003904 ORTHO05D004378 4.2e-27 125.2 144 55.6
CARHR081810 Cardamine hirsuta HOM05D003904 ORTHO05D004378 1.6e-26 123.2 148 54.1
Rhsim13G0046900 Rhododendron simsii HOM05D003904 ORTHO05D004378 2.7e-26 122.5 184 45.7
BolC3t16542H Brassica oleracea HOM05D003904 ORTHO05D004378 3.6e-26 122.1 139 54.7
C03p42720 Brassica napus HOM05D003904 ORTHO05D004378 1.0e-25 120.6 139 54.0
PSO357G0115 Papaver somniferum HOM05D003904 ORTHO05D004378 1.0e-25 120.6 153 56.9
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.0e-25 120.6 148 51.4
Nitab4.5_0002641g0160 Nicotiana tabacum HOM05D003904 ORTHO05D004378 2.3e-25 119.4 144 52.8
PSO170G6902 Papaver somniferum HOM05D003904 ORTHO05D004378 2.3e-25 119.4 153 56.2
Sp2g19090 Schrenkiella parvula HOM05D003904 ORTHO05D004378 6.8e-25 117.9 148 54.1
SGA_v2.0_scaffold18G08327 Striga asiatica HOM05D003904 ORTHO05D004378 8.8e-25 117.5 154 51.9
Lsat_1_v5_gn_5_180640 Lactuca sativa HOM05D003904 ORTHO05D004378 1.5e-24 116.7 144 52.1
A03p35130 Brassica napus HOM05D003904 ORTHO05D004378 2.0e-24 116.3 139 51.1
BraA03t12693Z Brassica rapa HOM05D003904 ORTHO05D004378 2.0e-24 116.3 148 50.7
Migut.N00625 Erythranthe guttata HOM05D003904 ORTHO05D004378 2.0e-24 116.3 153 51.6
SGA_v2.0_scaffold3G01636 Striga asiatica HOM05D003904 ORTHO05D004378 2.0e-24 116.3 155 47.7
DCAR_004727 Daucus carota HOM05D003904 ORTHO05D004378 2.6e-24 115.9 150 50.7
unitig_736.g22341 Utricularia gibba HOM05D003904 ORTHO05D004378 2.6e-24 115.9 156 50.0
VMungo0331G0837 Vigna mungo HOM05D003904 ORTHO05D004378 7.5e-24 114.4 108 60.2
Haze_24836 Corylus avellana HOM05D003904 ORTHO05D004378 1.3e-23 113.6 93 65.6
C07p39350 Brassica napus HOM05D003904 ORTHO05D004378 4.8e-23 111.7 150 54.0
Haze_24839 Corylus avellana HOM05D003904 ORTHO05D004378 4.8e-23 111.7 93 64.5
BolC7t44455H Brassica oleracea HOM05D003904 ORTHO05D004378 6.3e-23 111.3 126 58.7
ECA248G3101 Erigeron canadensis HOM05D003904 ORTHO05D004378 6.3e-23 111.3 145 53.1
Nitab4.5_0002616g0050 Nicotiana tabacum HOM05D003904 ORTHO05D004378 6.3e-23 111.3 144 50.7
SGA_v2.0_scaffold6G03227 Striga asiatica HOM05D003904 ORTHO05D004378 6.3e-23 111.3 152 46.7
Oeu031826.2 Olea europaea HOM05D003904 ORTHO05D004378 8.3e-23 110.9 101 61.4
Rhsim01G0254500 Rhododendron simsii HOM05D003904 ORTHO05D004378 8.3e-23 110.9 124 55.6
BraA06t26812Z Brassica rapa HOM05D003904 ORTHO05D004378 1.1e-22 110.5 150 54.0
ATR0609G102 Amborella trichopoda HOM05D003904 ORTHO05D004378 3.1e-22 109.0 129 53.5
Aqoxy5G00012 Aquilegia oxysepala HOM05D003904 ORTHO05D004378 9.1e-22 107.5 170 49.4
A06p38980 Brassica napus HOM05D003904 ORTHO05D004378 3.5e-21 105.5 146 54.1
vmacro14743 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 1.3e-20 103.6 212 39.2
SalBow6G0123 Salvia bowleyana HOM05D003904 ORTHO05D004378 1.7e-20 103.2 223 36.8
BcaC06g30767 Brassica carinata HOM05D002747 ORTHO05D003069 3.8e-20 102.1 108 63.0
BcaC06g30768 Brassica carinata HOM05D003904 ORTHO05D004378 6.6e-20 101.3 150 50.7
CDE05G2788 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 1.1e-19 100.5 156 49.4
HPP92_021424 Vanilla planifolia HOM05D003904 ORTHO05D004378 1.5e-19 100.1 153 49.7
arahy.Tifrunner.gnm1.ann1.YG552F Arachis hypogaea HOM05D003904 ORTHO05D004378 5.5e-19 98.2 199 41.7
CDE05G3121 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 5.5e-19 98.2 156 50.6
Os04g0378200 Oryza sativa ssp. japonica HOM05D003904 ORTHO05D004378 8.0e-18 94.4 160 43.1
Zm00001eb085860 Zea mays HOM05D003904 ORTHO05D004378 5.2e-17 91.7 158 45.6
AL8G21740 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 3.4e-16 89.0 151 46.4
Carub.0008s0842 Capsella rubella HOM05D003904 ORTHO05D004378 3.4e-16 89.0 152 43.4
AT5G48680 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 5.7e-16 88.2 152 46.7
CSS0009711 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 9.8e-16 87.4 116 50.9
Zm00001eb420700 Zea mays HOM05D003904 ORTHO05D004378 8.3e-15 84.3 149 43.6
Aa31sc370G10 Aethionema arabicum HOM05D003904 ORTHO05D004378 1.6e-13 80.1 71 59.2
Sed0014618 Sechium edule HOM05D003904 ORTHO05D004378 1.1e-11 73.9 94 58.5
vmacro02774 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 5.6e-11 71.6 167 37.7
Hund18422 Selenicereus undatus HOM05D003904 ORTHO05D004378 2.1e-10 69.7 151 41.1
AUR62035029 Chenopodium quinoa HOM05D003904 ORTHO05D004378 2.8e-10 69.3 90 54.4
Oeu037381.1 Olea europaea HOM05D003904 ORTHO05D004378 2.3e-09 66.2 77 53.2
CARHR183220 Cardamine hirsuta HOM05D003904 ORTHO05D004378 3.4e-08 62.4 147 40.1
Mapoly0007s0146 Marchantia polymorpha HOM05D003904 ORTHO05D004378 6.4e-07 58.2 132 37.1
Migut.D02496 Erythranthe guttata HOM05D003904 ORTHO05D004378 9.2e-06 54.3 92 42.4


User provided reference genes

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