Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 9.9e-256 886.3 466 100.0
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 7.2e-113 411.8 509 53.2
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 3.1e-108 396.4 452 56.9
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.0e-107 393.7 502 53.0
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.1e-105 387.9 502 52.2
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 2.1e-104 383.6 502 51.8
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 8.0e-72 275.4 447 44.1
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 6.0e-67 259.2 395 46.6
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 5.8e-62 242.7 351 46.7
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 2.9e-61 240.4 381 43.8
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 4.1e-60 236.5 511 39.1
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 3.4e-54 216.9 358 43.9
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 7.6e-54 215.7 436 37.2
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 9.9e-54 215.3 471 37.8
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 2.2e-53 214.2 374 41.7
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 2.2e-53 214.2 323 45.8
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 4.1e-52 209.9 425 38.8
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.2e-52 208.8 514 35.8
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.2e-52 208.8 470 38.3
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.0e-50 205.3 349 41.0
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.3e-50 204.9 345 43.2
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.7e-50 204.5 364 42.6
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-49 201.4 474 37.8
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 3.3e-49 200.3 311 45.3
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.1e-48 197.6 436 40.1
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.1e-48 195.7 353 40.5
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 5.2e-47 193.0 431 35.0
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 6.8e-47 192.6 323 44.0
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 4.4e-46 189.9 475 34.5
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 4.4e-46 189.9 350 40.9
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.9e-45 187.2 496 34.1
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 1.9e-44 184.5 346 41.0
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 4.2e-44 183.3 531 34.1
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 7.1e-44 182.6 550 32.9
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 3.0e-42 177.2 388 37.9
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 5.1e-42 176.4 473 34.5
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.6e-40 171.4 404 38.9
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.6e-40 171.4 325 43.1
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.6e-40 171.4 435 35.4
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 8.1e-40 169.1 393 35.1
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.1e-39 168.7 357 39.2
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.1e-39 168.7 393 35.1
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 1.8e-39 167.9 376 38.6
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.1e-39 167.2 338 37.9
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.5e-38 164.9 369 37.4
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 4.4e-38 163.3 470 34.5
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.3e-37 161.8 457 33.7
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 2.9e-37 160.6 431 35.3
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 3.8e-37 160.2 437 35.7
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.1e-36 158.7 474 32.9
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.1e-36 158.7 352 39.5
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 1.9e-36 157.9 440 34.1
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 2.4e-36 157.5 456 33.1
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 2.4e-36 157.5 456 33.1
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 2.4e-36 157.5 394 36.8
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 4.2e-36 156.8 432 35.4
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 2.1e-35 154.5 324 38.6
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 6.0e-35 152.9 487 32.9
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-34 151.8 368 37.5
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.3e-34 151.8 398 37.9
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.7e-34 151.4 475 34.5
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 3.9e-34 150.2 334 37.4
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 5.1e-34 149.8 422 34.1
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 8.7e-34 149.1 388 35.6
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 8.7e-34 149.1 353 37.4
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.1e-33 148.7 291 36.1
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 9.6e-33 145.6 365 36.4
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-32 145.2 400 36.5
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 1.3e-32 145.2 222 46.4
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 1.6e-32 144.8 321 39.3
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 6.2e-32 142.9 419 34.6
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 8.1e-32 142.5 306 37.9
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 8.1e-32 142.5 521 29.8
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.1e-31 142.1 464 31.5
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 4.0e-31 140.2 335 36.1
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 5.3e-31 139.8 340 36.8
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 5.3e-31 139.8 322 37.0
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.2e-30 138.7 405 33.6
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.2e-30 138.7 415 34.9
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 3.4e-30 137.1 343 35.6
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 3.4e-30 137.1 358 34.9
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 7.6e-30 136.0 350 34.0
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 9.9e-30 135.6 551 29.2
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 2.9e-29 134.0 398 31.4
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.9e-29 134.0 455 31.2
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 3.8e-29 133.7 350 33.4
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 6.4e-29 132.9 454 32.6
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 6.4e-29 132.9 406 32.5
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 5.5e-28 129.8 317 36.9
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 9.3e-28 129.0 355 34.1
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.2e-27 128.6 407 31.4
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 2.1e-27 127.9 379 34.6
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 2.7e-27 127.5 380 33.7
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.6e-27 126.7 322 36.0
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 6.0e-27 126.3 388 32.5
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 6.0e-27 126.3 312 36.9
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.8e-26 124.8 463 31.5
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.5e-25 120.9 348 33.9
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 2.5e-25 120.9 259 37.8
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 3.3e-25 120.6 409 29.8
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 3.3e-25 120.6 409 29.8
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 4.3e-25 120.2 512 28.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 5.6e-25 119.8 282 39.7
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 2.8e-24 117.5 430 29.5
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 4.8e-24 116.7 381 32.3
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 6.2e-24 116.3 153 47.7
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 8.1e-24 115.9 337 34.4
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.4e-23 115.2 390 30.8
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.4e-23 115.2 312 34.6
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 9.0e-23 112.5 467 30.2
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 4.5e-22 110.2 359 32.9
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 5.8e-22 109.8 335 34.6
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 1.0e-21 109.0 402 30.6
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 1.3e-21 108.6 212 42.5
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.9e-21 106.7 460 30.2
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.1e-20 105.5 501 26.1
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.9e-20 104.8 364 30.8
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.1e-20 102.8 166 45.8
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 2.7e-19 100.9 166 45.2
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 7.9e-19 99.4 219 37.9
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 1.8e-18 98.2 223 38.1
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.8e-18 98.2 382 30.6
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 2.3e-18 97.8 188 39.4
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 6.7e-18 96.3 361 30.5
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 2.5e-17 94.4 292 32.2
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 4.3e-17 93.6 357 29.4
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 5.7e-17 93.2 222 37.4
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 7.4e-17 92.8 503 25.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 9.6e-17 92.4 325 31.7
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 1.1e-15 89.0 198 37.4
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 1.1e-15 89.0 388 28.1
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.8e-15 88.2 222 37.4
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.5e-14 85.1 212 32.1
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 3.4e-14 84.0 279 31.9
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.0e-13 82.4 196 35.7
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 1.4e-12 78.6 232 31.0
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 1.9e-12 78.2 695 22.0
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 3.2e-12 77.4 326 28.8
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 9.3e-12 75.9 411 26.0
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 1.2e-11 75.5 383 26.6
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 4.6e-11 73.6 185 32.4
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.1e-11 73.2 120 44.2
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 6.7e-10 69.7 245 29.8
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.1e-09 68.9 87 48.3
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.1e-09 68.9 79 51.9
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.5e-09 68.6 212 34.4
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 5.7e-09 66.6 87 47.1
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 5.7e-09 66.6 87 47.1
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 1.3e-08 65.5 87 46.0
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 1.6e-08 65.1 460 25.0
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 2.2e-08 64.7 87 46.0
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 2.4e-07 61.2 122 32.0
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 4.1e-07 60.5 102 37.3
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 6.9e-07 59.7 133 38.3
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 6.9e-07 59.7 109 41.3
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 6.9e-07 59.7 143 33.6
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.0e-06 58.2 86 46.5
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.0e-06 58.2 162 27.2
Zm00001eb220700 Zea mays HOM05D036983 ORTHO05D037006 2.6e-06 57.8 113 35.4
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.4e-06 57.4 200 30.0
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 4.5e-06 57.0 156 34.0
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 5.9e-06 56.6 134 32.1
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 5.9e-06 56.6 134 32.1
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 7.7e-06 56.2 204 29.4
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 7.7e-06 56.2 134 32.1
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 7.7e-06 56.2 204 29.4
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 7.7e-06 56.2 204 29.4
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 7.7e-06 56.2 199 33.7


User provided reference genes

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