Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_11314 Corchorus olitorius HOM05D000395 ORTHO05D000088 8.5e-111 403.7 203 100.0
COL.COLO4_11373 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.7e-56 222.6 169 74.0
COL.COLO4_22201 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.3e-55 219.5 159 74.8
COL.COLO4_09123 Corchorus olitorius HOM05D001787 ORTHO05D003488 1.6e-48 196.8 163 66.9
COL.COLO4_11486 Corchorus olitorius HOM05D000258 ORTHO05D000153 3.1e-44 182.6 158 69.6
COL.COLO4_11361 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.7e-42 176.8 163 65.6
COL.COLO4_22195 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.4e-41 172.9 167 60.5
Thecc.01G046900 Theobroma cacao HOM05D000395 ORTHO05D000088 2.2e-34 149.8 167 53.9
Thecc.01G047000 Theobroma cacao HOM05D000395 ORTHO05D000088 1.6e-32 143.7 184 49.5
Gohir.A02G160900 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.4e-28 130.6 162 50.0
Gohir.D03G019600 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.8e-28 130.2 162 50.0
Gorai.003G020000 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.8e-28 130.2 162 50.0
COL.COLO4_11372 Corchorus olitorius HOM05D000395 ORTHO05D000088 7.9e-24 114.8 183 43.2
COL.COLO4_11082 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.3e-21 107.5 188 39.4
Gohir.A02G160850 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.3e-21 107.5 163 46.0
COL.COLO4_27400 Corchorus olitorius HOM05D000395 ORTHO05D000088 8.2e-21 104.8 165 44.2
COL.COLO4_11359 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.4e-20 103.2 160 44.4
COL.COLO4_22726 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.2e-16 90.9 197 37.6
CiPaw.02G012600 Carya illinoinensis HOM05D000395 ORTHO05D000088 1.4e-15 87.4 160 38.8
Gohir.D10G094400 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.9e-15 85.9 179 38.0
Gohir.A10G093700 Gossypium hirsutum HOM05D000395 ORTHO05D000088 8.8e-15 84.7 179 37.4
Gorai.011G103800 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.1e-14 84.3 179 38.0
Gorai.003G020800 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.5e-14 84.0 156 41.7
Duzib264G0510 Durio zibethinus HOM05D000395 ORTHO05D000088 2.5e-14 83.2 185 32.4
COL.COLO4_27399 Corchorus olitorius HOM05D000395 ORTHO05D000088 5.7e-14 82.0 152 40.1
QL02p075828 Quercus lobata HOM05D000395 ORTHO05D000088 1.3e-13 80.9 222 34.7
COL.COLO4_11358 Corchorus olitorius HOM05D000395 ORTHO05D000088 6.3e-13 78.6 168 41.7
Gorai.013G245600 Gossypium raimondii HOM05D000395 ORTHO05D000088 2.4e-12 76.6 154 37.7
Prupe.7G143500 Prunus persica HOM05D000395 ORTHO05D000088 2.4e-12 76.6 187 32.6
MD02G1160300 Malus domestica HOM05D000395 ORTHO05D000088 4.1e-12 75.9 149 36.9
Prupe.7G143900 Prunus persica HOM05D000395 ORTHO05D000088 6.9e-12 75.1 170 34.1
QL02p075847 Quercus lobata HOM05D000395 ORTHO05D000088 9.1e-12 74.7 204 31.9
Gorai.008G071600 Gossypium raimondii HOM05D000395 ORTHO05D000088 2.0e-11 73.6 154 37.0
COL.COLO4_25308 Corchorus olitorius HOM05D000395 ORTHO05D000088 2.6e-11 73.2 157 35.7
Thecc.01G047200 Theobroma cacao HOM05D000395 ORTHO05D000088 2.6e-11 73.2 159 35.2
RcHm_v2.0_Chr2g0134821 Rosa chinensis HOM05D000395 ORTHO05D000088 3.4e-11 72.8 146 39.7
Thecc.01G047100 Theobroma cacao HOM05D000395 ORTHO05D000088 4.5e-11 72.4 161 35.4
FvH4_1g14670 Fragaria vesca HOM05D000395 ORTHO05D000088 5.9e-11 72.0 156 38.5
FAN19G3035 Fragaria x ananassa HOM05D000395 ORTHO05D000088 5.9e-11 72.0 156 38.5
CiPaw.01G027100 Carya illinoinensis HOM05D000395 ORTHO05D000088 1.0e-10 71.2 191 36.1
MD02G1159900 Malus domestica HOM05D000395 ORTHO05D000088 1.0e-10 71.2 149 34.2
CiPaw.01G027200 Carya illinoinensis HOM05D000395 ORTHO05D000088 1.7e-10 70.5 192 35.4
Duzib147G0434 Durio zibethinus HOM05D000395 ORTHO05D000088 2.2e-10 70.1 176 30.7
MD02G1159700 Malus domestica HOM05D000395 ORTHO05D000088 2.9e-10 69.7 149 32.9
Manes.07G115200 Manihot esculenta HOM05D000395 ORTHO05D000088 2.9e-10 69.7 158 34.2
FAN26G1384 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.8e-10 69.3 156 36.5
Gohir.A11G188800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.8e-10 69.3 164 32.9
QL06p043901 Quercus lobata HOM05D000395 ORTHO05D000088 3.8e-10 69.3 155 36.8
MD15G1274400 Malus domestica HOM05D000395 ORTHO05D000088 6.5e-10 68.6 196 31.6
FvH4_1g14700 Fragaria vesca HOM05D000395 ORTHO05D000088 1.1e-09 67.8 158 38.0
Gohir.D11G195300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.4e-09 67.4 164 32.9
MD02G1159800 Malus domestica HOM05D000395 ORTHO05D000088 1.4e-09 67.4 149 33.6
COL.COLO4_22198 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.9e-09 67.0 159 33.3
Gorai.008G071300 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.9e-09 67.0 179 32.4
FAN28G0051 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.5e-09 66.6 156 38.5
FvH4_7g02010 Fragaria vesca HOM05D000395 ORTHO05D000088 7.2e-09 65.1 158 39.9
FAN06G4020 Fragaria x ananassa HOM05D000395 ORTHO05D000088 7.2e-09 65.1 158 39.9
Gorai.007G209200 Gossypium raimondii HOM05D000395 ORTHO05D000088 7.2e-09 65.1 164 32.3
Manes.10G031300 Manihot esculenta HOM05D000395 ORTHO05D000088 7.2e-09 65.1 163 34.4
Sabra01G0175400 Salix brachista HOM05D000395 ORTHO05D000088 7.2e-09 65.1 181 34.3
Cc00_g02950 Coffea canephora HOM05D000395 ORTHO05D000088 9.4e-09 64.7 195 31.3
COL.COLO4_30629 Corchorus olitorius HOM05D000395 ORTHO05D000088 9.4e-09 64.7 175 33.1
Lj5g0011145 Lotus japonicus HOM05D000395 ORTHO05D000088 1.2e-08 64.3 154 33.8
RcHm_v2.0_Chr2g0103551 Rosa chinensis HOM05D000395 ORTHO05D000088 1.2e-08 64.3 159 32.1
FAN19G3192 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.6e-08 63.9 156 37.8
RcHm_v2.0_Chr2g0103501 Rosa chinensis HOM05D000395 ORTHO05D000088 2.7e-08 63.2 102 41.2
CANSAT01G2675 Cannabis sativa HOM05D000395 ORTHO05D000088 3.6e-08 62.8 213 31.5
CANSAT01G2954 Cannabis sativa HOM05D000395 ORTHO05D000088 3.6e-08 62.8 150 35.3
FvH4_1g29250 Fragaria vesca HOM05D000395 ORTHO05D000088 3.6e-08 62.8 156 37.2
Manes.07G115000 Manihot esculenta HOM05D000395 ORTHO05D000088 4.7e-08 62.4 161 31.1
TWI09G0938 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 6.1e-08 62.0 195 33.3
TWI73G0729 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 6.1e-08 62.0 167 35.9
FAN28G0564 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.0e-07 61.2 158 35.4
RcHm_v2.0_Chr2g0152181 Rosa chinensis HOM05D000395 ORTHO05D000088 1.0e-07 61.2 87 46.0
CiPaw.01G027300 Carya illinoinensis HOM05D000395 ORTHO05D000088 1.4e-07 60.8 202 31.2
Cc07_g20140 Coffea canephora HOM05D000395 ORTHO05D000088 2.3e-07 60.1 185 31.4
Gohir.D03G019650 Gossypium hirsutum HOM05D000395 ORTHO05D018968 2.3e-07 60.1 94 45.7
Gorai.003G020200 Gossypium raimondii HOM05D000395 ORTHO05D018968 2.3e-07 60.1 94 45.7
Nitab4.5_0000090g0070 Nicotiana tabacum HOM05D000395 ORTHO05D000088 2.3e-07 60.1 190 30.0
QL05p085016 Quercus lobata HOM05D000395 ORTHO05D000088 2.3e-07 60.1 162 35.8
TAR381G0288 Trochodendron aralioides HOM05D000395 ORTHO05D000088 2.3e-07 60.1 190 30.5
Gorai.003G020500 Gossypium raimondii HOM05D000395 ORTHO05D000088 3.0e-07 59.7 145 32.4
Prupe.7G143600 Prunus persica HOM05D000395 ORTHO05D000088 3.0e-07 59.7 170 30.0
Gohir.A02G160766 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.9e-07 59.3 146 29.5
Lj2g0003753 Lotus japonicus HOM05D000395 ORTHO05D000088 3.9e-07 59.3 154 32.5
QL05p084622 Quercus lobata HOM05D000395 ORTHO05D000088 3.9e-07 59.3 162 34.0
QL05p084669 Quercus lobata HOM05D000395 ORTHO05D000088 3.9e-07 59.3 162 34.0
CANSAT01G1395 Cannabis sativa HOM05D000395 ORTHO05D000088 6.7e-07 58.5 150 32.0
Prupe.7G039600 Prunus persica HOM05D000395 ORTHO05D000088 6.7e-07 58.5 197 30.5
TWI09G0236 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 6.7e-07 58.5 155 33.5
MD15G1302000 Malus domestica HOM05D000395 ORTHO05D000088 8.8e-07 58.2 164 32.9
TAR628G1113 Trochodendron aralioides HOM05D000395 ORTHO05D000088 8.8e-07 58.2 237 24.5
CANSAT01G0137 Cannabis sativa HOM05D000395 ORTHO05D000088 1.1e-06 57.8 155 33.5
FvH4_1g14680 Fragaria vesca HOM05D000395 ORTHO05D000088 1.1e-06 57.8 91 44.0
COL.COLO4_22199 Corchorus olitorius HOM05D000395 ORTHO05D000088 1.5e-06 57.4 176 30.1
FAN19G0111 Fragaria x ananassa HOM05D000395 ORTHO05D000088 1.5e-06 57.4 151 32.5
Gohir.D03G019775 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.5e-06 57.4 95 42.1
Cpa.g.sc132.62 Carica papaya HOM05D000395 ORTHO05D000088 2.0e-06 57.0 149 30.2
FAN28G1435 Fragaria x ananassa HOM05D000395 ORTHO05D000088 2.6e-06 56.6 94 39.4
Nitab4.5_0000090g0010 Nicotiana tabacum HOM05D000395 ORTHO05D000088 2.6e-06 56.6 170 30.0
Peaxi162Scf00019g00226 Petunia axillaris HOM05D000395 ORTHO05D000088 2.6e-06 56.6 171 31.6
Peaxi162Scf00123g01015 Petunia axillaris HOM05D000395 ORTHO05D000088 2.6e-06 56.6 178 30.3
QL10p038826 Quercus lobata HOM05D000395 ORTHO05D000088 2.6e-06 56.6 156 36.5
TWI09G0933 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 2.6e-06 56.6 157 31.8
COL.COLO4_11354 Corchorus olitorius HOM05D000395 ORTHO05D000088 3.3e-06 56.2 157 32.5
COL.COLO4_11356 Corchorus olitorius HOM05D000395 ORTHO05D000088 3.3e-06 56.2 164 29.3
FvH4_1g14690 Fragaria vesca HOM05D000395 ORTHO05D000088 3.3e-06 56.2 151 31.8
FAN14G4811 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.3e-06 56.2 100 39.0
RcHm_v2.0_Chr2g0103521 Rosa chinensis HOM05D000395 ORTHO05D000088 3.3e-06 56.2 85 44.7
RcHm_v2.0_Chr2g0103541 Rosa chinensis HOM05D000395 ORTHO05D000088 3.3e-06 56.2 184 33.2
CANSAT01G3151 Cannabis sativa HOM05D000395 ORTHO05D000088 4.4e-06 55.8 156 32.7
Gohir.A12G067500 Gossypium hirsutum HOM05D000395 ORTHO05D000088 4.4e-06 55.8 179 30.7
Nitab4.5_0002615g0010 Nicotiana tabacum HOM05D000395 ORTHO05D000088 4.4e-06 55.8 186 30.1
Nitab4.5_0013011g0010 Nicotiana tabacum HOM05D000395 ORTHO05D000088 4.4e-06 55.8 181 30.9
Peaxi162Scf00234g00019 Petunia axillaris HOM05D000395 ORTHO05D000088 4.4e-06 55.8 170 30.0
COL.COLO4_22196 Corchorus olitorius HOM05D000395 ORTHO05D000088 5.7e-06 55.5 189 27.0
Prupe.7G143700 Prunus persica HOM05D000395 ORTHO05D000088 5.7e-06 55.5 146 33.6
COL.COLO4_07656 Corchorus olitorius HOM05D000395 ORTHO05D000088 7.4e-06 55.1 152 32.9
TWI09G0341 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 9.7e-06 54.7 186 31.7


User provided reference genes

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