Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 3.9e-202 708.0 373 100.0
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 3.1e-167 592.0 370 83.0
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 1.2e-166 590.1 373 85.5
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 3.8e-165 585.1 373 83.6
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 6.5e-165 584.3 373 83.6
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 7.9e-163 577.4 373 82.8
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 6.7e-138 494.6 383 70.5
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 8.8e-138 494.2 381 70.9
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 5.3e-135 485.0 383 70.0
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 7.0e-135 484.6 390 72.1
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 7.0e-135 484.6 387 69.8
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 2.9e-133 479.2 387 70.3
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 1.6e-131 473.4 370 70.3
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 3.6e-131 472.2 400 66.8
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 3.0e-130 469.2 385 68.6
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 5.7e-129 464.9 370 70.0
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 1.7e-128 463.4 380 68.7
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.7e-128 463.4 380 68.7
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 2.2e-128 463.0 386 66.8
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 2.8e-128 462.6 387 66.1
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 2.8e-128 462.6 324 77.5
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 1.4e-127 460.3 329 74.8
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 1.4e-127 460.3 387 68.0
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 4.1e-127 458.8 379 67.5
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 5.4e-127 458.4 380 68.4
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 5.4e-127 458.4 380 68.4
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 1.6e-126 456.8 380 67.4
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 2.0e-126 456.4 374 68.2
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 4.5e-126 455.3 390 66.7
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 7.7e-126 454.5 370 69.2
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 1.3e-125 453.8 375 66.7
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 2.3e-125 453.0 383 67.6
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 2.3e-125 453.0 376 68.6
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 2.3e-125 453.0 391 64.2
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 2.3e-125 453.0 373 67.3
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 2.3e-125 453.0 377 66.0
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 2.9e-125 452.6 375 66.4
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 2.9e-125 452.6 373 68.1
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 3.8e-125 452.2 374 67.1
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 3.8e-125 452.2 352 70.5
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 6.5e-125 451.4 376 68.6
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 1.5e-124 450.3 352 70.5
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 2.5e-124 449.5 387 66.1
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 3.2e-124 449.1 393 64.9
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 4.2e-124 448.7 387 65.6
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 5.5e-124 448.4 385 67.0
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 7.2e-124 448.0 375 68.0
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 9.5e-124 447.6 379 68.1
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 9.5e-124 447.6 379 68.1
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 2.1e-123 446.4 374 68.4
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 8.0e-123 444.5 390 65.6
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 2.3e-122 443.0 347 71.5
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 5.2e-122 441.8 373 67.8
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 5.2e-122 441.8 369 66.9
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 1.5e-121 440.3 381 64.6
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 2.6e-121 439.5 374 66.3
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 2.6e-121 439.5 374 65.5
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 5.7e-121 438.3 397 63.7
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 7.5e-121 438.0 312 74.4
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 9.8e-121 437.6 362 67.1
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 1.3e-120 437.2 337 70.3
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 1.3e-120 437.2 274 82.5
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 2.8e-120 436.0 388 64.4
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 3.7e-120 435.6 333 71.2
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 8.3e-120 434.5 302 77.8
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 8.3e-120 434.5 366 66.4
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.1e-119 434.1 259 84.9
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 5.4e-119 431.8 380 63.9
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 4.5e-118 428.7 398 62.8
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 1.0e-117 427.6 338 69.5
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 1.3e-117 427.2 339 69.3
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 2.9e-117 426.0 324 72.8
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 2.5e-116 422.9 292 77.4
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 2.1e-115 419.9 372 64.5
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 3.6e-115 419.1 390 61.8
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 6.8e-114 414.8 372 65.1
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 1.5e-113 413.7 375 64.3
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 2.0e-113 413.3 390 63.3
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 2.4e-111 406.4 330 68.8
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 4.1e-111 405.6 348 64.7
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 9.2e-111 404.4 324 66.7
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 1.2e-110 404.1 393 61.6
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 1.8e-106 390.2 328 66.8
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 5.2e-106 388.7 304 69.7
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 2.2e-104 383.3 310 66.5
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 4.9e-104 382.1 242 81.8
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 4.1e-103 379.0 463 51.4
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 5.4e-103 378.6 305 64.9
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 1.2e-102 377.5 305 68.5
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 2.7e-102 376.3 468 50.4
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 4.6e-102 375.6 271 73.8
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 8.6e-101 371.3 413 54.2
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 1.9e-100 370.2 334 62.3
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 7.3e-100 368.2 369 59.1
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 1.2e-99 367.5 300 64.7
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 3.6e-99 365.9 263 70.7
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 3.7e-96 355.9 268 69.8
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 1.4e-95 354.0 331 63.1
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 9.2e-95 351.3 298 66.4
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 6.0e-94 348.6 266 66.5
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 7.8e-94 348.2 392 54.1
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 6.6e-93 345.1 208 85.6
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 8.1e-91 338.2 241 74.7
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 6.8e-90 335.1 313 63.3
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 1.3e-85 320.9 428 51.2
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 2.6e-81 306.6 276 58.3
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 8.4e-80 301.6 312 60.9
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 1.1e-79 301.2 263 59.3
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 2.1e-78 297.0 178 84.8
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 4.8e-75 285.8 356 52.8
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.6e-70 270.8 257 55.6
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 2.1e-70 270.4 308 52.3
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 3.5e-70 269.6 187 72.7
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 3.3e-68 263.1 267 55.8
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 1.8e-66 257.3 259 59.5
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.9e-63 247.3 302 47.7
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 5.5e-63 245.7 157 79.0
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 3.8e-56 223.0 129 86.8
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 5.7e-52 209.1 206 57.3
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 1.1e-50 204.9 128 82.0
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 9.0e-50 201.8 115 91.3
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 5.3e-42 176.0 105 80.0
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.0e-37 161.8 251 37.8
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 3.9e-29 133.3 176 45.5
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 9.7e-28 128.6 78 84.6
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-25 121.7 187 36.9
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 6.5e-24 115.9 82 75.6
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 1.5e-23 114.8 90 67.8
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 3.4e-12 77.0 66 65.2
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 2.4e-10 70.9 127 40.9
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 3.1e-10 70.5 38 89.5
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 1.2e-09 68.6 264 25.4
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 2.3e-08 64.3 36 86.1
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 1.2e-06 58.5 51 56.9


User provided reference genes

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