Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 2.6e-291 1005.0 622 100.0
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 6.0e-216 754.6 606 72.8
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 1.2e-152 544.3 486 62.8
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 8.3e-149 531.6 572 57.7
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 1.8e-148 530.4 549 59.2
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 8.6e-146 521.5 510 59.2
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.1e-145 521.2 510 59.2
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.1e-140 504.6 510 57.8
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 3.8e-101 373.2 482 47.9
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 5.5e-100 369.4 478 48.5
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 1.6e-99 367.9 486 48.4
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 3.0e-98 363.6 486 46.5
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 3.9e-98 363.2 480 48.1
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 1.1e-97 361.7 518 44.6
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 1.5e-97 361.3 485 47.4
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 1.5e-97 361.3 481 46.6
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 9.6e-97 358.6 486 49.2
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 3.4e-94 350.1 482 46.1
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 8.4e-93 345.5 488 46.3
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 1.4e-92 344.7 482 45.9
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 1.6e-91 341.3 509 45.0
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 7.9e-91 339.0 482 45.6
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 4.3e-89 333.2 403 53.1
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 7.4e-89 332.4 378 52.1
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 1.0e-85 322.0 508 41.3
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 1.7e-85 321.2 517 41.6
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 1.7e-85 321.2 490 44.7
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 5.0e-85 319.7 380 51.6
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 5.0e-85 319.7 436 47.7
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 5.0e-85 319.7 436 47.7
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 1.2e-83 315.1 548 45.6
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.1e-79 302.0 487 44.8
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.1e-79 300.1 480 42.7
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 4.1e-79 300.1 476 42.9
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 5.3e-79 299.7 433 46.0
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 6.9e-79 299.3 420 46.9
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 1.2e-78 298.5 508 43.1
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 4.5e-78 296.6 439 44.2
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.3e-77 295.0 403 47.4
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 1.7e-77 294.7 516 44.2
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 1.4e-76 291.6 374 46.8
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 3.2e-76 290.4 515 43.9
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 4.7e-75 286.6 501 40.5
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 6.1e-75 286.2 480 40.2
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 2.3e-74 284.3 484 42.1
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 5.1e-74 283.1 492 42.3
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 1.5e-73 281.6 505 40.2
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.0e-73 281.2 406 45.6
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 2.6e-73 280.8 477 40.3
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 5.7e-73 279.6 503 40.4
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 7.4e-73 279.3 374 46.5
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 2.2e-72 277.7 439 41.7
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.1e-71 275.4 408 45.1
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.1e-71 275.4 363 47.1
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.1e-71 275.4 363 47.1
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 3.5e-70 270.4 371 49.1
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 4.5e-70 270.0 486 43.0
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 4.5e-70 270.0 534 38.8
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 7.7e-70 269.2 420 42.1
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.0e-69 268.9 370 52.7
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 2.9e-69 267.3 183 72.1
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 5.0e-69 266.5 387 45.7
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 1.1e-68 265.4 206 65.5
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 1.4e-68 265.0 184 71.2
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 1.9e-68 264.6 207 66.7
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 3.2e-68 263.8 184 71.2
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 4.7e-67 260.0 180 71.1
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 1.4e-66 258.5 488 39.8
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 3.0e-66 257.3 506 38.9
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 6.7e-66 256.1 201 69.2
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 8.8e-66 255.8 404 43.8
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 1.1e-65 255.4 484 39.3
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 1.1e-65 255.4 201 68.2
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 2.6e-65 254.2 473 40.0
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 5.7e-65 253.1 159 75.5
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 9.7e-65 252.3 203 65.0
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 1.3e-64 251.9 374 45.2
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 1.7e-64 251.5 407 43.2
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 4.8e-64 250.0 443 41.5
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 4.8e-64 250.0 348 46.3
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 3.1e-63 247.3 406 43.3
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.6e-62 245.0 511 37.6
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 2.6e-62 244.2 160 74.4
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 3.5e-62 243.8 486 38.3
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 3.5e-62 243.8 491 38.3
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 5.9e-62 243.0 441 39.9
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 7.7e-62 242.7 400 40.5
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 2.2e-61 241.1 482 39.6
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 3.8e-61 240.4 479 39.2
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 5.0e-61 240.0 179 67.6
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.5e-60 238.4 201 63.2
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 5.5e-60 236.5 193 66.8
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.2e-59 235.3 421 39.9
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 1.6e-59 235.0 163 71.2
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 2.1e-59 234.6 208 62.0
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 3.6e-59 233.8 193 65.3
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 3.6e-59 233.8 346 44.8
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 3.6e-59 233.8 192 64.6
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 3.0e-58 230.7 174 66.7
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 4.0e-58 230.3 170 67.6
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 4.0e-58 230.3 170 67.6
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 4.0e-58 230.3 176 66.5
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 5.2e-58 229.9 174 66.7
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 6.7e-58 229.6 180 67.8
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.2e-57 228.8 167 68.3
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.2e-57 228.8 167 68.3
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 2.6e-57 227.6 208 61.1
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 3.3e-57 227.3 174 67.2
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 4.4e-57 226.9 152 73.7
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 5.7e-57 226.5 374 42.8
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 7.5e-57 226.1 205 58.5
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.4e-55 221.9 190 64.2
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 3.1e-55 220.7 204 58.3
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 7.0e-55 219.5 230 55.2
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 1.7e-53 214.9 189 61.4
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 5.0e-53 213.4 196 59.2
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 1.1e-52 212.2 163 63.8
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 4.2e-52 210.3 477 42.1
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 9.4e-52 209.1 174 60.9
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 1.6e-51 208.4 144 73.6
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 2.1e-51 208.0 186 57.0
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 2.3e-50 204.5 215 49.8
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 5.2e-50 203.4 174 62.1
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 5.2e-50 203.4 477 41.7
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 3.4e-49 200.7 163 60.7
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 2.8e-48 197.6 364 47.3
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 4.8e-48 196.8 176 58.0
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 7.0e-47 193.0 138 68.1
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 4.5e-46 190.3 175 54.9
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 2.8e-43 181.0 203 50.7
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 3.4e-41 174.1 197 54.3
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 5.9e-38 163.3 174 52.9
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 1.3e-37 162.2 135 56.3
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 1.9e-36 158.3 175 48.6
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.3e-36 157.5 175 49.7
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 5.6e-36 156.8 217 43.3
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.3e-34 151.4 201 46.8
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.1e-31 142.5 139 51.8
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 2.4e-31 141.4 160 48.1
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 5.4e-31 140.2 136 52.9
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 7.5e-25 119.8 363 33.9
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 4.9e-24 117.1 96 64.6
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 7.0e-23 113.2 74 73.0
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 3.5e-22 110.9 73 72.6
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.2e-14 85.9 71 59.2
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 2.1e-14 85.1 54 74.1
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 2.1e-11 75.1 158 31.0
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 2.4e-10 71.6 127 34.6
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 1.6e-06 58.9 158 32.9
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 7.8e-06 56.6 44 59.1


User provided reference genes

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