Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.3e-199 699.5 350 100.0
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 3.5e-181 638.3 350 90.0
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.3e-180 636.3 350 90.6
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 2.3e-180 635.6 350 89.7
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.5e-179 632.9 350 89.1
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 4.3e-179 631.3 350 88.9
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 4.1e-177 624.8 350 88.6
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.5e-176 622.9 350 87.7
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 2.6e-176 622.1 350 88.0
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.9e-159 565.5 350 81.4
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 5.0e-159 564.7 349 79.9
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 5.0e-159 564.7 350 81.1
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.1e-158 563.5 348 80.7
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 7.2e-158 560.8 348 78.7
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 8.8e-156 553.9 348 77.0
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 8.8e-156 553.9 348 77.0
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 8.8e-156 553.9 348 77.0
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 1.1e-155 553.5 350 78.3
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.1e-155 553.5 350 77.7
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.0e-155 552.7 350 78.3
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 2.6e-155 552.4 350 78.9
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 2.6e-155 552.4 348 79.3
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 3.3e-155 552.0 350 78.9
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 3.3e-155 552.0 350 78.3
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 3.3e-155 552.0 350 78.3
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 4.4e-155 551.6 348 76.4
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.4e-155 551.6 350 78.3
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 5.7e-155 551.2 348 77.6
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 5.7e-155 551.2 350 77.7
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 9.7e-155 550.4 350 76.9
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 1.3e-154 550.1 348 76.1
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 1.7e-154 549.7 350 77.4
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 2.2e-154 549.3 348 76.7
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 2.2e-154 549.3 350 76.3
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.7e-154 548.5 351 77.2
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 3.7e-154 548.5 350 77.4
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 3.7e-154 548.5 350 78.6
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 4.8e-154 548.1 348 77.0
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.8e-154 548.1 350 77.7
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 8.2e-154 547.4 350 77.4
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 2.4e-153 545.8 350 77.4
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 2.4e-153 545.8 350 77.4
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 4.1e-153 545.0 348 76.1
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 4.1e-153 545.0 351 77.2
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 5.3e-153 544.7 348 76.4
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 5.3e-153 544.7 350 75.7
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 9.1e-153 543.9 351 76.9
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.0e-152 542.7 348 75.9
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 2.0e-152 542.7 350 75.4
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 2.6e-152 542.3 350 76.0
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 2.6e-152 542.3 350 76.0
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 2.6e-152 542.3 353 76.8
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 3.5e-152 542.0 350 75.1
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 5.9e-152 541.2 354 76.6
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 5.9e-152 541.2 352 76.4
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 1.3e-151 540.0 350 76.0
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 1.3e-151 540.0 350 76.3
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 1.3e-151 540.0 350 76.3
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.2e-151 539.3 348 76.7
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 2.9e-151 538.9 347 76.7
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 5.0e-151 538.1 348 76.7
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 8.5e-151 537.3 353 76.5
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 8.5e-151 537.3 350 76.3
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.1e-150 537.0 350 74.6
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 1.5e-150 536.6 352 75.9
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 1.9e-150 536.2 348 75.9
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 1.9e-150 536.2 350 75.1
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 2.5e-150 535.8 351 76.1
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 2.5e-150 535.8 350 76.3
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 2.5e-150 535.8 347 76.1
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 4.2e-150 535.0 353 75.9
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 4.2e-150 535.0 351 75.5
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 4.2e-150 535.0 349 75.9
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 5.5e-150 534.6 348 75.0
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 1.6e-149 533.1 351 75.5
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 2.1e-149 532.7 350 74.9
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 3.6e-149 531.9 351 74.9
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 3.6e-149 531.9 351 74.9
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 4.7e-149 531.6 350 75.1
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 6.1e-149 531.2 350 74.3
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 6.1e-149 531.2 350 75.1
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 6.1e-149 531.2 382 71.5
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 8.0e-149 530.8 350 74.6
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 8.0e-149 530.8 351 74.6
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 1.4e-148 530.0 351 76.1
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.8e-148 529.6 350 74.6
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 3.0e-148 528.9 351 74.1
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 3.3e-147 525.4 347 74.6
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 5.7e-147 524.6 347 74.4
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 1.3e-146 523.5 350 74.0
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 2.8e-146 522.3 350 72.9
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 2.8e-146 522.3 346 74.6
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.1e-145 520.4 352 73.9
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 1.0e-143 513.8 349 71.9
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.0e-143 513.8 354 72.3
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 1.9e-142 509.6 349 71.9
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 4.2e-142 508.4 348 71.8
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 4.2e-142 508.4 351 71.5
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 7.2e-142 507.7 354 71.2
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 9.4e-142 507.3 349 71.3
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 9.4e-142 507.3 351 73.2
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 6.1e-141 504.6 351 72.9
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.4e-140 503.4 350 70.9
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.0e-139 499.6 353 70.5
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 2.2e-138 496.1 350 69.1
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 4.8e-138 495.0 393 64.9
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.4e-137 493.4 415 62.4
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.1e-137 492.3 347 70.3
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 5.4e-137 491.5 367 68.1
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 2.7e-136 489.2 266 90.6
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 2.7e-136 489.2 350 68.9
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 6.5e-135 484.6 339 72.9
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 1.5e-134 483.4 347 69.7
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.9e-134 483.0 313 75.4
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 2.1e-133 479.6 352 68.8
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 1.4e-132 476.9 446 58.3
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 2.3e-132 476.1 306 76.8
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 6.8e-132 474.6 402 61.2
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 4.4e-131 471.9 347 67.4
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 1.6e-128 463.4 347 65.7
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.9e-122 442.6 347 65.1
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 2.7e-120 436.0 348 61.2
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 2.3e-119 433.0 347 61.7
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 5.0e-119 431.8 353 62.9
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 1.6e-112 410.2 354 59.9
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 6.0e-112 408.3 354 59.6
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 6.6e-111 404.8 238 84.0
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 9.5e-110 401.0 269 74.7
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.2e-104 384.0 271 71.6
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 3.9e-95 352.4 243 71.6
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.2e-83 314.3 239 71.1
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.3e-79 300.1 181 82.3
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 1.9e-70 270.4 369 43.6
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 4.8e-61 239.2 328 43.0
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 9.0e-60 235.0 316 43.7
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 2.2e-53 213.8 186 61.8
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 4.5e-43 179.5 112 79.5
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.0e-42 178.3 242 47.1
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 1.6e-35 154.5 220 42.3
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 1.9e-33 147.5 124 58.9
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 1.6e-27 127.9 79 77.2
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 2.0e-27 127.5 90 71.1
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 2.1e-24 117.5 85 64.7
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 4.7e-24 116.3 84 69.0
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 1.8e-23 114.4 83 63.9
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 5.7e-22 109.4 74 66.2
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 5.7e-22 109.4 74 66.2
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 7.5e-22 109.0 86 65.1
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 7.5e-22 109.0 86 65.1
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 1.1e-20 105.1 74 63.5
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 3.1e-20 103.6 86 64.0
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 3.5e-19 100.1 83 65.1
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 9.5e-17 92.0 182 39.6
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 8.0e-16 89.0 73 60.3
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 5.2e-15 86.3 66 57.6
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 3.5e-11 73.6 66 53.0
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 5.9e-11 72.8 113 43.4
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 7.8e-11 72.4 113 42.5
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 2.3e-10 70.9 59 59.3
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 5.6e-09 66.2 86 48.8
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 1.5e-06 58.2 125 35.2


User provided reference genes

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