Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07664 Corchorus olitorius HOM05D003838 ORTHO05D004444 1.0e-114 416.8 208 100.0
Duzib212G0889 Durio zibethinus HOM05D003838 ORTHO05D004444 7.4e-86 320.9 208 76.0
Thecc.04G179800 Theobroma cacao HOM05D003838 ORTHO05D004444 2.8e-85 318.9 208 76.9
Gorai.011G142700 Gossypium raimondii HOM05D003838 ORTHO05D004444 3.7e-85 318.5 208 76.9
Gohir.A10G137200 Gossypium hirsutum HOM05D003838 ORTHO05D004444 2.6e-83 312.4 208 75.5
Ciclev10022331m.g Citrus clementina HOM05D003838 ORTHO05D004444 1.4e-68 263.5 200 65.0
GSVIVG01022417001 Vitis vinifera HOM05D003838 ORTHO05D004444 1.2e-67 260.4 200 62.5
Hma1.2p1_0002F.1_g002170 Hydrangea macrophylla HOM05D003838 ORTHO05D004444 1.3e-66 256.9 199 63.8
Cfa015168 Carpinus fangiana HOM05D003838 ORTHO05D004444 1.9e-65 253.1 193 64.2
Prupe.3G140200 Prunus persica HOM05D003838 ORTHO05D004444 1.9e-65 253.1 197 64.0
MD13G1208600 Malus domestica HOM05D003838 ORTHO05D004444 7.2e-65 251.1 197 64.5
CsaV3_6G002030 Cucumis sativus L. HOM05D003838 ORTHO05D004444 1.2e-64 250.4 200 62.0
CSS0031035 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.6e-64 250.0 196 63.3
Potri.017G030000 Populus trichocarpa HOM05D003838 ORTHO05D004444 8.0e-64 247.7 197 64.0
TAR376G0719 Trochodendron aralioides HOM05D003838 ORTHO05D004444 1.0e-63 247.3 193 63.2
Haze_01511 Corylus avellana HOM05D003838 ORTHO05D004444 3.0e-63 245.7 184 65.8
AUR62028681 Chenopodium quinoa HOM05D003838 ORTHO05D004444 5.2e-63 245.0 200 57.0
CSS0022226 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 6.8e-63 244.6 196 62.2
Lj9P420T34 Lonicera japonica HOM05D003838 ORTHO05D004444 8.9e-63 244.2 199 60.8
CSS0030021 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 1.5e-62 243.4 196 62.2
Manes.03G131800 Manihot esculenta HOM05D003838 ORTHO05D004444 1.5e-62 243.4 200 60.5
Sed0023259 Sechium edule HOM05D003838 ORTHO05D004444 2.6e-62 242.7 200 61.0
Sabra17G0019500 Salix brachista HOM05D003838 ORTHO05D004444 3.4e-62 242.3 197 62.9
AUR62008103 Chenopodium quinoa HOM05D003838 ORTHO05D004444 4.4e-62 241.9 200 56.0
TAR629G1244 Trochodendron aralioides HOM05D003838 ORTHO05D004444 4.4e-62 241.9 193 62.2
arahy.Tifrunner.gnm1.ann1.0B6HPH Arachis hypogaea HOM05D003838 ORTHO05D004444 2.8e-61 239.2 198 58.6
RcHm_v2.0_Chr4g0393311 Rosa chinensis HOM05D003838 ORTHO05D004444 2.8e-61 239.2 200 60.5
ClCG08G004710 Citrullus lanatus HOM05D003838 ORTHO05D004444 4.9e-61 238.4 200 61.0
MBI16_g18329_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 6.3e-61 238.0 200 58.5
Lalb_Chr10g0091981 Lupinus albus HOM05D003838 ORTHO05D004444 8.3e-61 237.7 195 59.5
Phvul.005G032200 Phaseolus vulgaris HOM05D003838 ORTHO05D004444 8.3e-61 237.7 200 59.0
arahy.Tifrunner.gnm1.ann1.536K79 Arachis hypogaea HOM05D003838 ORTHO05D004444 1.1e-60 237.3 198 58.1
CANSAT78G1384 Cannabis sativa HOM05D003838 ORTHO05D004444 1.1e-60 237.3 196 58.2
Nn1g08615 Nelumbo nucifera HOM05D003838 ORTHO05D004444 1.1e-60 237.3 192 58.3
Prupe.1G032600 Prunus persica HOM05D003838 ORTHO05D004444 1.1e-60 237.3 197 59.9
PGR083G1767 Punica granatum HOM05D003838 ORTHO05D004444 1.4e-60 236.9 201 59.7
Atru.chr3.1491 Acer truncatum HOM05D003838 ORTHO05D004444 1.8e-60 236.5 194 61.9
VMungo1080G0233 Vigna mungo HOM05D003838 ORTHO05D004444 1.8e-60 236.5 200 59.5
RcHm_v2.0_Chr4g0390961 Rosa chinensis HOM05D003838 ORTHO05D004444 2.4e-60 236.1 193 62.2
QL03p038958 Quercus lobata HOM05D003838 ORTHO05D004444 5.4e-60 235.0 194 61.9
RcHm_v2.0_Chr4g0390901 Rosa chinensis HOM05D003838 ORTHO05D004444 1.2e-59 233.8 193 61.7
Manes.15G070000 Manihot esculenta HOM05D003838 ORTHO05D004444 1.6e-59 233.4 200 60.0
Eucgr.A00080 Eucalyptus grandis HOM05D003838 ORTHO05D004444 2.7e-59 232.6 200 58.0
FvH4_4g03700 Fragaria vesca HOM05D003838 ORTHO05D004444 3.5e-59 232.3 200 59.0
Migut.I00010 Erythranthe guttata HOM05D003838 ORTHO05D004444 5.9e-59 231.5 199 55.3
FAN17G3077 Fragaria x ananassa HOM05D003838 ORTHO05D004444 5.9e-59 231.5 200 59.0
Glyma.11G081600 Glycine max HOM05D003838 ORTHO05D004444 5.9e-59 231.5 200 57.5
Gohir.D10G129400 Gossypium hirsutum HOM05D003838 ORTHO05D004444 1.0e-58 230.7 150 76.7
PSO210G5426 Papaver somniferum HOM05D003838 ORTHO05D004444 1.0e-58 230.7 194 56.2
TWI38G0658 Tripterygium wilfordii HOM05D003838 ORTHO05D004444 2.3e-58 229.6 195 57.9
MELO3C008320.2 Cucumis melo HOM05D003838 ORTHO05D004444 2.9e-58 229.2 247 50.2
Ah.11g050950 Amaranthus hybridus HOM05D003838 ORTHO05D004444 3.8e-58 228.8 202 56.4
PSO063G7239 Papaver somniferum HOM05D003838 ORTHO05D004444 3.8e-58 228.8 194 57.2
SGA_v2.0_scaffold90G27933 Striga asiatica HOM05D003838 ORTHO05D004444 6.6e-58 228.0 197 56.3
CDE06G0074 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 8.6e-58 227.6 193 57.5
Sc20g0000750 Simmondsia chinensis HOM05D003838 ORTHO05D004444 1.1e-57 227.3 202 55.9
EL10Ac5g10613 Beta vulgaris HOM05D003838 ORTHO05D004444 1.9e-57 226.5 203 55.2
CSS0020761 Camellia sinensis var. sinensis HOM05D003838 ORTHO05D004444 3.3e-57 225.7 196 59.7
PSO782G5029 Papaver somniferum HOM05D003838 ORTHO05D004444 4.3e-57 225.3 195 55.9
Actinidia26441 Actinidia chinensis HOM05D003838 ORTHO05D004444 5.6e-57 224.9 196 57.1
FAN12G0299 Fragaria x ananassa HOM05D000189 ORTHO05D000474 9.5e-57 224.2 191 59.7
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.6e-56 223.4 194 55.7
MSTRG.23130 Avicennia marina HOM05D003838 ORTHO05D004444 1.6e-56 223.4 199 53.8
SalBow7G4199 Salvia bowleyana HOM05D003838 ORTHO05D004444 2.8e-56 222.6 195 56.4
Ca_14316_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 3.6e-56 222.2 195 57.4
Lj3g0022900 Lotus japonicus HOM05D003838 ORTHO05D004444 1.4e-55 220.3 199 57.8
MBI16_g18328_MAGBIO Magnolia biondii HOM05D003838 ORTHO05D004444 1.4e-55 220.3 200 54.5
SGA_v2.0_scaffold25G10841 Striga asiatica HOM05D003838 ORTHO05D004444 1.4e-55 220.3 197 54.8
Cc07_g02090 Coffea canephora HOM05D003838 ORTHO05D004444 2.3e-55 219.5 197 55.3
Medtr3g021420 Medicago truncatula HOM05D003838 ORTHO05D004444 2.3e-55 219.5 200 54.5
Psat5g216120 Pisum sativum HOM05D003838 ORTHO05D004444 2.3e-55 219.5 200 56.5
vmacro23050 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 2.3e-55 219.5 195 55.4
Lalb_Chr17g0336351 Lupinus albus HOM05D003838 ORTHO05D004444 3.1e-55 219.2 194 55.7
Nitab4.5_0000515g0040 Nicotiana tabacum HOM05D003838 ORTHO05D004444 4.0e-55 218.8 196 54.6
Cc06_g03220 Coffea canephora HOM05D003838 ORTHO05D004444 6.8e-55 218.0 197 56.3
SalBow5G3784 Salvia bowleyana HOM05D003838 ORTHO05D004444 6.8e-55 218.0 197 55.8
Medtr3g030930 Medicago truncatula HOM05D003838 ORTHO05D004444 8.9e-55 217.6 200 54.5
Peaxi162Scf00201g00019 Petunia axillaris HOM05D003838 ORTHO05D004444 4.4e-54 215.3 199 53.3
Medtr7g090650 Medicago truncatula HOM05D003838 ORTHO05D004444 5.8e-54 214.9 202 54.5
QL10p048766 Quercus lobata HOM05D003838 ORTHO05D004444 5.8e-54 214.9 201 54.7
Rhsim05G0049100 Rhododendron simsii HOM05D003838 ORTHO05D004444 5.8e-54 214.9 188 55.9
vmacro01004 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 7.5e-54 214.5 189 56.1
BolC5t29205H Brassica oleracea HOM05D003838 ORTHO05D004444 2.2e-53 213.0 195 52.3
Rhsim09G0030300 Rhododendron simsii HOM05D003838 ORTHO05D004444 2.9e-53 212.6 196 53.6
C05p04300 Brassica napus HOM05D003838 ORTHO05D004444 4.9e-53 211.8 195 52.3
DCAR_006535 Daucus carota HOM05D003838 ORTHO05D004444 4.9e-53 211.8 193 53.4
TPR.G3853 Trifolium pratense HOM05D003838 ORTHO05D004444 8.3e-53 211.1 200 55.0
THA.LOC104826203 Tarenaya hassleriana HOM05D003838 ORTHO05D004444 1.1e-52 210.7 200 54.0
Aqoxy7G02681 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 4.1e-52 208.8 193 54.4
AL1G15920 Arabidopsis lyrata HOM05D003838 ORTHO05D004444 4.1e-52 208.8 196 51.5
Peaxi162Scf00970g00146 Petunia axillaris HOM05D003838 ORTHO05D004444 4.1e-52 208.8 193 53.4
ATR0665G504 Amborella trichopoda HOM05D003838 ORTHO05D004444 7.0e-52 208.0 199 54.3
Aqoxy7G02974 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 7.0e-52 208.0 198 52.0
Nn5g28129 Nelumbo nucifera HOM05D003838 ORTHO05D004444 7.0e-52 208.0 200 55.0
Hund02940 Selenicereus undatus HOM05D003838 ORTHO05D004444 9.2e-52 207.6 204 52.9
Hund09632 Selenicereus undatus HOM05D003838 ORTHO05D004444 9.2e-52 207.6 202 51.0
RhsimUnG0118200 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.6e-51 206.8 196 52.0
BraA10t42729Z Brassica rapa HOM05D003838 ORTHO05D004444 2.7e-51 206.1 195 51.3
A10p04640 Brassica napus HOM05D003838 ORTHO05D004444 3.5e-51 205.7 195 51.3
Nitab4.5_0002162g0060 Nicotiana tabacum HOM05D003838 ORTHO05D004444 7.8e-51 204.5 193 53.9
RcHm_v2.0_Chr4g0390871 Rosa chinensis HOM05D003838 ORTHO05D004444 1.0e-50 204.1 180 58.9
Aa31LG1G8370 Aethionema arabicum HOM05D003838 ORTHO05D004444 1.3e-50 203.8 196 51.5
AT1G05970 Arabidopsis thaliana HOM05D003838 ORTHO05D004444 1.3e-50 203.8 196 49.5
PGSC0003DMG400029841 Solanum tuberosum HOM05D003838 ORTHO05D004444 3.9e-50 202.2 192 53.1
Thhalv10008811m.g Eutrema salsugineum HOM05D003838 ORTHO05D004444 5.0e-50 201.8 196 50.5
Sp1g04800 Schrenkiella parvula HOM05D003838 ORTHO05D004444 5.0e-50 201.8 192 51.0
Solyc10g079580.2 Solanum lycopersicum HOM05D003838 ORTHO05D004444 8.6e-50 201.1 192 53.1
CDE02G1933 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 1.5e-49 200.3 193 50.3
HanXRQChr02g0057691 Helianthus annuus HOM05D003838 ORTHO05D004444 1.5e-49 200.3 192 52.1
HanXRQChr16g0504861 Helianthus annuus HOM05D003838 ORTHO05D004444 2.5e-49 199.5 192 51.6
Nitab4.5_0024579g0010 Nicotiana tabacum HOM05D003838 ORTHO05D004444 2.5e-49 199.5 196 52.0
Sopen10g030220 Solanum pennellii HOM05D003838 ORTHO05D004444 2.5e-49 199.5 192 52.6
Nitab4.5_0002208g0080 Nicotiana tabacum HOM05D003838 ORTHO05D004444 3.3e-49 199.1 193 51.3
HanXRQChr16g0516761 Helianthus annuus HOM05D003838 ORTHO05D004444 5.6e-49 198.4 192 51.6
HanXRQChr01g0021151 Helianthus annuus HOM05D003838 ORTHO05D004444 7.3e-49 198.0 192 52.1
Lj5P157T23 Lonicera japonica HOM05D003838 ORTHO05D004444 1.6e-48 196.8 150 62.7
ECA246G3227 Erigeron canadensis HOM05D003838 ORTHO05D004444 2.1e-48 196.4 199 52.3
FAN12G3313 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.1e-48 196.4 192 54.2
HanXRQChr10g0305171 Helianthus annuus HOM05D003838 ORTHO05D004444 2.1e-48 196.4 192 51.0
arahy.Tifrunner.gnm1.ann1.IZ4F9K Arachis hypogaea HOM05D003838 ORTHO05D004444 6.2e-48 194.9 198 50.0
Carub.0001s0533 Capsella rubella HOM05D003838 ORTHO05D004444 1.4e-47 193.7 196 48.5
CARHR005500 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.4e-47 193.7 196 48.5
FvH4_4g02890 Fragaria vesca HOM05D003838 ORTHO05D004444 1.4e-47 193.7 192 53.6
HanXRQChr14g0439271 Helianthus annuus HOM05D003838 ORTHO05D004444 1.4e-47 193.7 192 50.5
Oeu016385.1 Olea europaea HOM05D003838 ORTHO05D004444 1.4e-47 193.7 175 56.0
SEGI_03408 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.4e-47 193.7 189 52.4
PGSC0003DMG400002948 Solanum tuberosum HOM05D003838 ORTHO05D004444 1.4e-47 193.7 190 51.6
HanXRQChr16g0517051 Helianthus annuus HOM05D003838 ORTHO05D004444 6.8e-47 191.4 193 50.8
Aqoxy285s002 Aquilegia oxysepala HOM05D003838 ORTHO05D004444 8.9e-47 191.0 180 52.2
Zm00001eb304590 Zea mays HOM05D003838 ORTHO05D004444 1.2e-46 190.7 191 50.3
AUR62024648 Chenopodium quinoa HOM05D004658 ORTHO05D005927 1.5e-46 190.3 204 48.0
HanXRQChr02g0057701 Helianthus annuus HOM05D003838 ORTHO05D004444 4.4e-46 188.7 192 50.5
Os07g0256200 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.5e-46 188.0 192 47.4
BcaC05g24315 Brassica carinata HOM05D003838 ORTHO05D004444 9.8e-46 187.6 195 48.7
Lsat_1_v5_gn_2_85780 Lactuca sativa HOM05D003838 ORTHO05D004444 1.3e-45 187.2 179 53.6
AUR62011801 Chenopodium quinoa HOM05D003838 ORTHO05D004444 2.9e-45 186.0 205 48.3
HanXRQChr12g0355781 Helianthus annuus HOM05D003838 ORTHO05D004444 3.7e-45 185.7 192 50.0
Migut.L01638 Erythranthe guttata HOM05D003838 ORTHO05D004444 3.2e-44 182.6 196 47.4
ECA238G0498 Erigeron canadensis HOM05D003838 ORTHO05D004444 5.4e-44 181.8 178 53.4
CiPaw.01G100400 Carya illinoinensis HOM05D003838 ORTHO05D004444 2.7e-43 179.5 145 60.0
Os09g0111800 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 6.6e-42 174.9 193 45.6
Os04g0689700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 1.5e-41 173.7 193 45.6
SEGI_13821 Sequoiadendron giganteum HOM05D003838 ORTHO05D004444 1.1e-39 167.5 201 44.8
CARHR038440 Cardamine hirsuta HOM05D003838 ORTHO05D004444 1.4e-39 167.2 164 48.8
Sp1g04950 Schrenkiella parvula HOM05D003838 ORTHO05D004444 4.0e-39 165.6 192 45.3
Sopen04g016270 Solanum pennellii HOM05D003838 ORTHO05D004444 1.2e-38 164.1 171 49.7
Ca_25969_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 5.8e-38 161.8 165 50.3
unitig_750.g28470 Utricularia gibba HOM05D003838 ORTHO05D004444 5.8e-38 161.8 195 43.1
EL10As5g23534 Beta vulgaris HOM05D003838 ORTHO05D004444 1.3e-37 160.6 199 44.2
Zm00001eb076930 Zea mays HOM05D003838 ORTHO05D004444 1.1e-36 157.5 193 43.0
Zm00001eb076310 Zea mays HOM05D003838 ORTHO05D004444 2.4e-36 156.4 193 43.0
Os02g0669700 Oryza sativa ssp. japonica HOM05D003838 ORTHO05D004444 7.1e-36 154.8 203 41.9
Ca_24199_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 4.6e-35 152.1 166 49.4
CDE08G0678 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 6.0e-35 151.8 124 58.9
PSO832G2359 Papaver somniferum HOM05D003838 ORTHO05D004444 7.8e-35 151.4 194 42.3
ATR0665G008 Amborella trichopoda HOM05D003838 ORTHO05D004444 2.3e-34 149.8 151 51.0
HPP92_001929 Vanilla planifolia HOM05D003838 ORTHO05D004444 3.0e-34 149.4 193 43.0
Cpa.g.sc71.4 Carica papaya HOM05D003838 ORTHO05D004444 1.1e-33 147.5 127 58.3
Ca_24671_v3 Cicer arietinum L. HOM05D003838 ORTHO05D004444 2.8e-32 142.9 151 48.3
vmacro04174 Vaccinium macrocarpon HOM05D003838 ORTHO05D004444 6.2e-32 141.7 160 50.6
FAN22G1473 Fragaria x ananassa HOM05D003838 ORTHO05D004444 2.0e-30 136.7 134 53.7
Rhsim12G0057800 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.2e-27 127.5 162 42.0
RcHm_v2.0_Chr4g0390851 Rosa chinensis HOM05D003838 ORTHO05D004444 1.0e-26 124.4 115 55.7
MD16G1210800 Malus domestica HOM05D003838 ORTHO05D004444 4.4e-22 109.0 111 51.4
CDE08G1258 Ceratophyllum demersum HOM05D003838 ORTHO05D004444 4.2e-20 102.4 193 34.7
Rhsim12G0009000 Rhododendron simsii HOM05D003838 ORTHO05D004444 1.6e-19 100.5 188 34.0
Peaxi162Scf01029g00016 Petunia axillaris HOM05D003838 ORTHO05D004444 1.6e-16 90.5 199 30.7
Actinidia06873 Actinidia chinensis HOM05D003838 ORTHO05D004444 6.9e-15 85.1 187 31.6
CBR_g31525 Chara braunii HOM05D003838 ORTHO05D004444 9.0e-15 84.7 215 27.9
FAN17G0891 Fragaria x ananassa HOM05D003838 ORTHO05D004444 9.0e-15 84.7 106 47.2
Sopen04g016210 Solanum pennellii HOM05D003838 ORTHO05D004444 9.0e-15 84.7 84 48.8
CBR_g15988 Chara braunii HOM05D003838 ORTHO05D004444 1.5e-14 84.0 220 28.2
Solyc04g040053.1 Solanum lycopersicum HOM05D003838 ORTHO05D004444 7.6e-14 81.6 167 32.9
Solyc04g040010.3 Solanum lycopersicum HOM05D003838 ORTHO05D004444 2.4e-12 76.6 79 46.8
Mapoly0037s0121 Marchantia polymorpha HOM05D003838 ORTHO05D004444 1.6e-11 73.9 177 28.2
Pp3c10_5570 Physcomitrium patens HOM05D003838 ORTHO05D004444 4.6e-11 72.4 160 29.4


User provided reference genes

Program Settings