Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 8.2e-50 200.3 116 100.0
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 1.0e-47 193.4 116 95.7
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 2.2e-47 192.2 116 94.8
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 3.8e-47 191.4 116 94.8
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 6.5e-47 190.7 116 94.8
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 6.5e-47 190.7 116 94.8
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.1e-46 189.9 116 94.0
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 1.1e-46 189.9 116 94.0
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 3.2e-46 188.3 116 94.0
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 3.2e-46 188.3 116 93.1
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 2.7e-45 185.3 117 93.2
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 3.6e-45 184.9 116 92.2
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 6.1e-45 184.1 116 92.2
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 6.1e-45 184.1 114 92.1
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 1.0e-44 183.3 116 91.4
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 1.4e-44 183.0 116 91.4
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 2.3e-44 182.2 116 90.5
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 3.9e-44 181.4 116 89.7
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 5.1e-44 181.0 114 90.4
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 6.7e-44 180.6 116 88.8
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 8.8e-44 180.3 116 88.8
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 8.8e-44 180.3 116 87.9
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 1.1e-43 179.9 116 88.8
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 1.1e-43 179.9 116 89.7
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.1e-43 179.9 116 88.8
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.1e-43 179.9 116 88.8
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.1e-43 179.9 119 89.9
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 1.5e-43 179.5 116 88.8
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 2.5e-43 178.7 117 88.9
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 7.4e-43 177.2 116 87.1
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 9.7e-43 176.8 116 87.1
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 9.7e-43 176.8 116 87.9
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 9.7e-43 176.8 117 88.9
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 9.7e-43 176.8 119 88.2
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 2.2e-42 175.6 113 88.5
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 2.2e-42 175.6 117 88.9
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 2.8e-42 175.3 116 86.2
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 3.7e-42 174.9 116 87.9
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 3.7e-42 174.9 116 88.8
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 3.7e-42 174.9 116 88.8
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 3.7e-42 174.9 120 86.7
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 3.7e-42 174.9 116 86.2
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 4.8e-42 174.5 116 85.3
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 4.8e-42 174.5 116 87.9
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 4.8e-42 174.5 116 85.3
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 4.8e-42 174.5 116 85.3
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 8.2e-42 173.7 116 85.3
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 8.2e-42 173.7 120 85.0
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 8.2e-42 173.7 116 87.9
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 1.1e-41 173.3 117 87.2
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 1.1e-41 173.3 117 86.3
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 1.1e-41 173.3 116 85.3
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 1.1e-41 173.3 116 85.3
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.4e-41 172.9 112 89.3
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.4e-41 172.9 118 86.4
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 1.8e-41 172.6 116 87.1
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 1.8e-41 172.6 120 85.0
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 2.4e-41 172.2 116 87.1
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 2.4e-41 172.2 117 86.3
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 2.4e-41 172.2 116 87.1
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 2.4e-41 172.2 114 85.1
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 5.3e-41 171.0 116 86.2
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 9.1e-41 170.2 116 87.1
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 9.1e-41 170.2 116 86.2
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 1.2e-40 169.9 116 85.3
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.2e-40 169.9 113 85.8
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 1.5e-40 169.5 117 85.5
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 7.7e-40 167.2 137 75.2
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 1.3e-39 166.4 117 83.8
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.3e-39 166.4 116 84.5
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 2.2e-39 165.6 114 81.6
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 3.8e-39 164.9 116 82.8
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 5.0e-39 164.5 116 82.8
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 5.0e-39 164.5 149 69.8
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 6.5e-39 164.1 116 84.5
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.1e-38 163.3 114 79.8
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 1.9e-38 162.5 108 88.0
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 1.9e-38 162.5 108 88.0
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 3.2e-38 161.8 152 67.8
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 3.2e-38 161.8 104 89.4
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 5.5e-38 161.0 115 81.7
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 1.2e-37 159.8 110 84.5
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 1.6e-37 159.5 116 82.8
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 1.6e-37 159.5 110 83.6
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 2.7e-37 158.7 108 85.2
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 3.6e-37 158.3 116 81.9
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 6.1e-37 157.5 117 82.9
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 1.8e-36 156.0 103 87.4
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 2.3e-36 155.6 112 82.1
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 5.1e-36 154.5 116 80.2
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 8.8e-36 153.7 117 82.9
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 8.8e-36 153.7 116 81.0
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 1.1e-35 153.3 116 79.3
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 4.4e-35 151.4 115 79.1
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 5.7e-35 151.0 114 78.1
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 2.8e-34 148.7 116 79.3
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 6.3e-34 147.5 117 77.8
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 3.1e-33 145.2 114 77.2
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 1.5e-32 142.9 110 77.3
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 2.0e-32 142.5 119 77.3
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 2.6e-32 142.1 114 75.4
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 2.6e-32 142.1 103 81.6
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.5e-32 141.4 119 77.3
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.5e-32 141.4 119 77.3
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 2.2e-31 139.0 119 75.6
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 6.5e-31 137.5 142 64.1
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.9e-30 136.0 114 75.4
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.5e-30 135.6 94 81.9
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 7.2e-30 134.0 80 93.8
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 9.4e-30 133.7 116 72.4
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 8.0e-29 130.6 116 72.4
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 8.0e-29 130.6 119 73.1
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.3e-28 129.0 119 72.3
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 3.0e-28 128.6 116 68.1
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 5.2e-28 127.9 82 89.0
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 6.7e-28 127.5 83 89.2
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 2.0e-27 125.9 80 86.2
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 5.7e-27 124.4 80 87.5
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 1.4e-25 119.8 83 84.3
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 2.4e-25 119.0 116 66.4
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 7.0e-25 117.5 66 98.5
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 1.6e-24 116.3 81 82.7
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 1.7e-23 112.8 81 77.8
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 3.8e-23 111.7 68 89.7
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 2.5e-22 109.0 70 87.1
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 5.5e-22 107.8 116 62.9
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 2.7e-21 105.5 73 84.9
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 1.8e-20 102.8 68 85.3
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 5.2e-20 101.3 114 60.5
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 1.2e-19 100.1 116 57.8
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 4.4e-19 98.2 119 54.6
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 1.4e-17 93.2 54 96.3
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 4.1e-17 91.7 123 51.2
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 5.3e-17 91.3 58 86.2
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 1.3e-15 86.7 54 88.9
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 8.5e-15 84.0 87 54.0
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 1.1e-14 83.6 257 33.9
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 2.1e-13 79.3 75 70.7
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.2e-11 73.6 110 46.4
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 5.7e-11 71.2 51 84.3
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.7e-10 69.7 48 87.5
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 2.2e-10 69.3 48 81.2
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 1.2e-08 63.5 48 75.0
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 5.9e-08 61.2 40 85.0


User provided reference genes

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