Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 2.5e-145 518.8 284 100.0
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 6.1e-99 364.8 388 60.1
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 8.0e-99 364.4 378 62.2
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 8.0e-99 364.4 378 62.2
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 6.8e-98 361.3 379 61.7
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.1e-95 354.0 383 60.3
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 2.1e-91 339.7 391 54.0
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 8.0e-91 337.8 392 55.1
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.0e-90 337.4 393 55.0
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 2.3e-90 336.3 404 55.0
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 2.6e-89 332.8 400 53.0
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 5.8e-89 331.6 391 54.5
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 1.3e-88 330.5 406 51.5
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 1.3e-88 330.5 394 53.3
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 2.2e-88 329.7 388 55.7
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 2.2e-88 329.7 393 53.4
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.9e-88 329.3 394 54.1
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.9e-88 329.3 394 54.1
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 4.9e-88 328.6 397 55.7
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 6.4e-88 328.2 380 54.7
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 8.3e-88 327.8 397 52.4
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 1.4e-87 327.0 393 54.2
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 1.9e-87 326.6 393 53.2
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 4.1e-87 325.5 392 55.4
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 5.4e-87 325.1 388 57.5
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 5.4e-87 325.1 384 56.0
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 5.4e-87 325.1 389 55.8
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.2e-86 323.9 387 55.8
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 1.2e-86 323.9 353 54.1
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.6e-86 323.6 284 70.1
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.6e-86 323.6 388 54.6
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 1.6e-86 323.6 396 52.5
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 2.0e-86 323.2 396 55.1
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 2.0e-86 323.2 388 51.5
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 2.0e-86 323.2 391 52.2
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 3.5e-86 322.4 399 55.9
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 4.6e-86 322.0 389 53.0
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 6.0e-86 321.6 167 89.2
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 6.0e-86 321.6 167 89.2
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 7.8e-86 321.2 407 53.3
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 7.8e-86 321.2 398 49.0
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.0e-85 320.9 422 48.3
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.0e-85 320.9 387 51.2
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 1.0e-85 320.9 382 55.2
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 1.3e-85 320.5 169 88.2
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 2.3e-85 319.7 167 88.0
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 2.3e-85 319.7 167 90.4
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 2.3e-85 319.7 398 53.3
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 3.0e-85 319.3 395 54.2
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 3.0e-85 319.3 202 76.7
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 3.0e-85 319.3 406 53.0
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.5e-84 317.0 167 88.6
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 1.9e-84 316.6 167 89.2
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 2.5e-84 316.2 167 87.4
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 2.5e-84 316.2 391 52.2
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 2.5e-84 316.2 389 49.4
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 3.3e-84 315.8 167 88.0
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 3.3e-84 315.8 167 87.4
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 3.3e-84 315.8 368 57.6
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 4.3e-84 315.5 167 86.8
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 4.3e-84 315.5 167 87.4
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 7.3e-84 314.7 400 49.8
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 7.3e-84 314.7 167 87.4
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.6e-83 313.5 167 87.4
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 1.6e-83 313.5 167 86.2
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 2.1e-83 313.2 167 86.2
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 2.8e-83 312.8 167 86.8
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.6e-83 312.4 167 86.8
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.6e-83 312.4 167 86.8
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 8.1e-83 311.2 406 47.8
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 1.4e-82 310.5 167 85.0
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.8e-82 310.1 167 84.4
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 1.8e-82 310.1 167 87.4
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 2.3e-82 309.7 167 86.8
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 4.0e-82 308.9 167 85.0
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 5.2e-82 308.5 176 79.5
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 5.2e-82 308.5 352 55.4
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 5.2e-82 308.5 167 84.4
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 6.8e-82 308.1 176 80.1
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 8.9e-82 307.8 167 82.6
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 8.9e-82 307.8 167 84.4
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.5e-81 307.0 350 55.7
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.5e-81 307.0 350 55.7
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 2.0e-81 306.6 407 52.3
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.0e-81 306.6 348 55.7
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 2.0e-81 306.6 167 82.6
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.0e-81 306.6 377 48.8
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 3.4e-81 305.8 167 82.6
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 3.4e-81 305.8 167 86.2
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 7.5e-81 304.7 167 82.0
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 7.5e-81 304.7 167 82.0
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 7.5e-81 304.7 167 82.0
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 9.8e-81 304.3 348 56.6
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.7e-80 303.5 167 85.0
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 3.7e-80 302.4 201 73.1
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 8.3e-80 301.2 202 72.3
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.1e-79 300.8 167 82.0
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.9e-79 300.1 176 80.1
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 3.2e-79 299.3 185 76.8
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 4.1e-79 298.9 200 73.0
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 7.1e-79 298.1 167 82.6
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 3.5e-78 295.8 359 54.9
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 3.5e-78 295.8 167 80.8
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 6.0e-78 295.0 446 48.9
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 1.0e-77 294.3 167 81.4
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 1.7e-77 293.5 167 81.4
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 3.9e-77 292.4 167 80.8
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.9e-76 290.0 167 79.6
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 1.9e-76 290.0 405 47.4
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 5.6e-76 288.5 188 72.9
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 9.5e-76 287.7 166 79.5
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 1.6e-75 287.0 196 70.4
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.6e-73 279.6 348 49.1
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 4.9e-72 275.4 386 49.0
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 1.9e-68 263.5 280 55.7
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 6.4e-64 248.4 167 74.9
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 1.1e-63 247.7 132 84.8
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 5.4e-63 245.4 165 63.6
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 6.6e-53 211.8 167 55.7
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 1.5e-52 210.7 167 58.1
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 1.7e-48 197.2 176 54.0
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 1.0e-45 188.0 97 89.7
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.0e-40 171.4 94 84.0
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 8.4e-40 168.3 324 38.6
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 1.8e-29 134.0 279 42.7
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 8.2e-27 125.2 71 77.5
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.0e-24 118.2 106 53.8
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 7.2e-23 112.1 70 71.4
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 7.2e-23 112.1 70 71.4
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 1.1e-12 78.2 53 60.4
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 2.4e-10 70.5 68 54.4
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 2.2e-08 63.9 41 70.7
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 1.1e-07 61.6 36 77.8
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 4.2e-07 59.7 29 93.1
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 6.1e-06 55.8 27 88.9


User provided reference genes

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