Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_07332 Corchorus olitorius HOM05D001032 ORTHO05D000907 1.3e-104 383.3 225 100.0
Thecc.05G248500 Theobroma cacao HOM05D001032 ORTHO05D000907 3.2e-66 255.8 287 61.3
Duzib177G0057 Durio zibethinus HOM05D001032 ORTHO05D000907 4.6e-65 251.9 288 62.5
Duzib128G0563 Durio zibethinus HOM05D001032 ORTHO05D000907 4.2e-58 228.8 287 62.4
Gohir.A11G234200 Gossypium hirsutum HOM05D001032 ORTHO05D000907 6.0e-49 198.4 196 60.7
Gorai.007G260900 Gossypium raimondii HOM05D001032 ORTHO05D000907 1.0e-48 197.6 202 64.4
Ciclev10021611m.g Citrus clementina HOM05D001032 ORTHO05D000907 3.2e-42 176.0 194 57.7
Cpa.g.sc51.136 Carica papaya HOM05D001032 ORTHO05D000907 7.9e-41 171.4 199 60.3
GSVIVG01033416001 Vitis vinifera HOM05D001032 ORTHO05D000907 3.9e-40 169.1 199 51.8
QL07p018651 Quercus lobata HOM05D001032 ORTHO05D000907 1.1e-39 167.5 197 62.4
TAR623G0606 Trochodendron aralioides HOM05D001032 ORTHO05D000907 1.5e-39 167.2 197 60.9
Cfa017659 Carpinus fangiana HOM05D001032 ORTHO05D000907 1.9e-39 166.8 197 57.9
Manes.08G145400 Manihot esculenta HOM05D001032 ORTHO05D000907 4.3e-39 165.6 198 57.6
Actinidia30547 Actinidia chinensis HOM05D001032 ORTHO05D000907 5.7e-39 165.2 202 48.5
Gorai.013G115000 Gossypium raimondii HOM05D001032 ORTHO05D000907 9.6e-39 164.5 288 44.1
Haze_20489 Corylus avellana HOM05D001032 ORTHO05D000907 1.6e-38 163.7 197 58.4
Gohir.D13G102700 Gossypium hirsutum HOM05D001032 ORTHO05D000907 6.3e-38 161.8 288 43.8
Gohir.A13G099300 Gossypium hirsutum HOM05D001032 ORTHO05D000907 1.8e-37 160.2 288 43.8
CiPaw.10G127000 Carya illinoinensis HOM05D001032 ORTHO05D000907 5.9e-36 155.2 200 57.0
Ca_08276_v3 Cicer arietinum L. HOM05D001032 ORTHO05D000907 1.0e-35 154.5 199 57.3
ECA238G1879 Erigeron canadensis HOM05D001032 ORTHO05D000907 5.0e-35 152.1 206 55.3
Lj1g0013933 Lotus japonicus HOM05D001032 ORTHO05D000907 8.4e-35 151.4 198 58.6
Medtr7g085810 Medicago truncatula HOM05D001032 ORTHO05D000907 2.5e-34 149.8 202 50.5
Psat3g088720 Pisum sativum HOM05D001032 ORTHO05D000907 4.2e-34 149.1 206 49.5
TAR369G0403 Trochodendron aralioides HOM05D001032 ORTHO05D000907 4.2e-34 149.1 200 59.0
Aqoxy2G00522 Aquilegia oxysepala HOM05D001032 ORTHO05D000907 3.5e-33 146.0 205 49.8
MD12G1004600 Malus domestica HOM05D001032 ORTHO05D000907 3.5e-33 146.0 220 51.8
Prupe.7G004900 Prunus persica HOM05D001032 ORTHO05D000907 7.9e-33 144.8 227 40.1
VMungo1383G1348 Vigna mungo HOM05D001032 ORTHO05D000907 7.9e-33 144.8 211 57.8
Glyma.19G113100 Glycine max HOM05D001032 ORTHO05D000907 1.8e-32 143.7 198 59.1
Phvul.001G111800 Phaseolus vulgaris HOM05D001032 ORTHO05D000907 1.8e-32 143.7 201 58.7
Dinv01149 Davidia involucrata HOM05D001032 ORTHO05D000907 8.7e-32 141.4 114 62.3
TPR.G5915 Trifolium pratense HOM05D001032 ORTHO05D000907 1.1e-31 141.0 287 43.9
Actinidia22077 Actinidia chinensis HOM05D000406 ORTHO05D000907 5.7e-31 138.7 193 43.5
Lalb_Chr22g0359061 Lupinus albus HOM05D001032 ORTHO05D000907 2.2e-30 136.7 200 52.5
Glyma.16G040000 Glycine max HOM05D001032 ORTHO05D000907 1.1e-29 134.4 296 44.3
Eucgr.A02109 Eucalyptus grandis HOM05D001032 ORTHO05D000907 1.8e-29 133.7 214 53.7
MBI04_g09713_MAGBIO Magnolia biondii HOM05D001032 ORTHO05D000907 9.0e-29 131.3 198 49.5
RcHm_v2.0_Chr3g0450351 Rosa chinensis HOM05D001032 ORTHO05D000907 1.2e-28 131.0 208 48.1
Potri.013G056700 Populus trichocarpa HOM05D001032 ORTHO05D000907 1.5e-28 130.6 193 56.5
Nitab4.5_0001874g0060 Nicotiana tabacum HOM05D001032 ORTHO05D000907 2.0e-28 130.2 244 47.1
Migut.J01881 Erythranthe guttata HOM05D001032 ORTHO05D000907 3.4e-28 129.4 217 43.3
Cc06_g23190 Coffea canephora HOM05D001032 ORTHO05D000907 4.5e-28 129.0 226 43.8
FAN02G3132 Fragaria x ananassa HOM05D001032 ORTHO05D000907 5.9e-28 128.6 207 52.7
Potri.003G220200 Populus trichocarpa HOM05D001032 ORTHO05D000907 1.7e-27 127.1 200 43.0
FAN05G3762 Fragaria x ananassa HOM05D001032 ORTHO05D000907 2.2e-27 126.7 208 46.6
FAN05G5508 Fragaria x ananassa HOM05D001032 ORTHO05D000907 2.2e-27 126.7 208 46.6
FAN09G1644 Fragaria x ananassa HOM05D001032 ORTHO05D000907 2.2e-27 126.7 207 46.9
Nitab4.5_0000571g0020 Nicotiana tabacum HOM05D001032 ORTHO05D000907 2.2e-27 126.7 238 38.2
DCAR_013680 Daucus carota HOM05D001032 ORTHO05D000907 2.9e-27 126.3 201 42.3
Psat3g088600 Pisum sativum HOM05D001032 ORTHO05D000907 2.9e-27 126.3 181 47.5
Potri.019G036100 Populus trichocarpa HOM05D001032 ORTHO05D000907 8.5e-27 124.8 197 49.2
Dinv13464 Davidia involucrata HOM05D001032 ORTHO05D000907 2.5e-26 123.2 199 42.7
MD14G1003100 Malus domestica HOM05D001032 ORTHO05D000907 2.5e-26 123.2 239 46.4
Potri.001G004700 Populus trichocarpa HOM05D001032 ORTHO05D000907 3.2e-26 122.9 208 42.3
Nn7g35878 Nelumbo nucifera HOM05D001032 ORTHO05D000907 4.2e-26 122.5 197 42.1
Sabra19G0047800 Salix brachista HOM05D001032 ORTHO05D000907 5.5e-26 122.1 193 48.2
Lalb_Chr02g0157201 Lupinus albus HOM05D001032 ORTHO05D000907 1.6e-25 120.6 203 50.7
Peaxi162Scf00463g10017 Petunia axillaris HOM05D001032 ORTHO05D000907 2.7e-25 119.8 256 36.7
Actinidia16248 Actinidia chinensis HOM05D001032 ORTHO05D000907 3.6e-25 119.4 208 38.0
Sc13g0002590 Simmondsia chinensis HOM05D001032 ORTHO05D000907 3.6e-25 119.4 291 35.1
FvH4_6g02490 Fragaria vesca HOM05D001032 ORTHO05D000907 4.6e-25 119.0 300 39.0
FAN14G0898 Fragaria x ananassa HOM05D001032 ORTHO05D000907 4.6e-25 119.0 300 39.0
FAN14G5006 Fragaria x ananassa HOM05D001032 ORTHO05D000907 4.6e-25 119.0 300 39.0
Manes.09G140100 Manihot esculenta HOM05D001032 ORTHO05D000907 6.1e-25 118.6 259 36.3
Sabra01G0003300 Salix brachista HOM05D001032 ORTHO05D000907 6.1e-25 118.6 207 42.0
ClCG04G005390 Citrullus lanatus HOM05D001032 ORTHO05D000907 1.0e-24 117.9 201 40.3
CANSAT78G1867 Cannabis sativa HOM05D001032 ORTHO05D000907 1.4e-24 117.5 216 47.2
Lalb_Chr14g0364571 Lupinus albus HOM05D001032 ORTHO05D000907 1.4e-24 117.5 198 40.9
Sabra13G0050400 Salix brachista HOM05D001032 ORTHO05D000907 1.4e-24 117.5 190 52.6
Sabra03G0163900 Salix brachista HOM05D001032 ORTHO05D000907 2.3e-24 116.7 214 46.7
Haze_22948 Corylus avellana HOM05D001032 ORTHO05D000907 3.9e-24 115.9 198 40.9
Rhsim03G0001800 Rhododendron simsii HOM05D001032 ORTHO05D000907 8.8e-24 114.8 299 40.5
MD03G1004500 Malus domestica HOM05D001032 ORTHO05D000907 2.0e-23 113.6 208 37.0
CsaV3_4G012210 Cucumis sativus L. HOM05D001032 ORTHO05D000907 3.3e-23 112.8 198 41.4
MELO3C008810.2 Cucumis melo HOM05D001032 ORTHO05D000907 5.7e-23 112.1 198 40.4
Manes.03G098000 Manihot esculenta HOM05D001032 ORTHO05D000907 7.4e-23 111.7 204 46.6
QL01p008776 Quercus lobata HOM05D001032 ORTHO05D000907 9.7e-23 111.3 203 37.9
Cfa009568 Carpinus fangiana HOM05D001032 ORTHO05D000907 1.3e-22 110.9 198 39.4
DCAR_019874 Daucus carota HOM05D001032 ORTHO05D000907 3.7e-22 109.4 193 49.7
PGR042G2151 Punica granatum HOM05D001032 ORTHO05D000907 4.8e-22 109.0 201 37.8
Prupe.6G004400 Prunus persica HOM05D001032 ORTHO05D000907 1.4e-21 107.5 213 37.6
Thecc.09G207600 Theobroma cacao HOM05D001032 ORTHO05D000907 4.1e-21 105.9 201 42.8
Duzib168G1419 Durio zibethinus HOM05D001032 ORTHO05D000907 9.1e-21 104.8 195 37.4
COL.COLO4_35053 Corchorus olitorius HOM05D001032 ORTHO05D000907 1.2e-20 104.4 120 50.8
Phvul.004G081200 Phaseolus vulgaris HOM05D001032 ORTHO05D000907 2.6e-20 103.2 125 53.6
Nitab4.5_0010504g0010 Nicotiana tabacum HOM05D001032 ORTHO05D000907 3.4e-20 102.8 204 41.2
Nitab4.5_0000551g0250 Nicotiana tabacum HOM05D001032 ORTHO05D000907 5.9e-20 102.1 203 47.8
GSVIVG01025461001 Vitis vinifera HOM05D001032 ORTHO05D000907 5.9e-20 102.1 203 37.9
TPR.G9146 Trifolium pratense HOM05D001032 ORTHO05D000907 7.7e-20 101.7 251 37.5
Hma1.2p1_0589F.1_g184930 Hydrangea macrophylla HOM05D001032 ORTHO05D000907 1.7e-19 100.5 199 36.2
Nitab4.5_0000358g0190 Nicotiana tabacum HOM05D001032 ORTHO05D000907 1.7e-19 100.5 78 62.8
CAN.G960.44 Capsicum annuum HOM05D000862 ORTHO05D000943 2.2e-19 100.1 213 37.1
Eucgr.B03605 Eucalyptus grandis HOM05D001032 ORTHO05D000907 2.2e-19 100.1 211 37.0
Oeu057602.1 Olea europaea HOM05D001032 ORTHO05D000907 2.2e-19 100.1 113 48.7
VMungo0464G0629 Vigna mungo HOM05D001032 ORTHO05D000907 2.2e-19 100.1 231 37.7
Peaxi162Scf00349g00034 Petunia axillaris HOM05D001032 ORTHO05D000907 8.5e-19 98.2 212 42.5
MD11G1005200 Malus domestica HOM05D001032 ORTHO05D000907 1.1e-18 97.8 206 35.0
Nitab4.5_0001079g0200 Nicotiana tabacum HOM05D001032 ORTHO05D000907 1.4e-18 97.4 192 39.1
Sopen10g029240 Solanum pennellii HOM05D001032 ORTHO05D000907 1.4e-18 97.4 209 36.8
Peaxi162Scf00249g00718 Petunia axillaris HOM05D001032 ORTHO05D000907 1.9e-18 97.1 203 38.9
Psat1g095400 Pisum sativum HOM05D001032 ORTHO05D000907 2.5e-18 96.7 126 44.4
SalBow2G2148 Salvia bowleyana HOM05D001032 ORTHO05D000907 2.5e-18 96.7 203 33.0
PGSC0003DMG400008352 Solanum tuberosum HOM05D001032 ORTHO05D000907 2.5e-18 96.7 225 36.4
Ciclev10018044m.g Citrus clementina HOM05D001032 ORTHO05D000907 5.5e-18 95.5 203 36.5
Manes.15G108400 Manihot esculenta HOM05D001032 ORTHO05D000907 5.5e-18 95.5 207 33.3
RcHm_v2.0_Chr5g0083271 Rosa chinensis HOM05D001032 ORTHO05D000907 1.2e-17 94.4 204 36.3
PSO384G3219 Papaver somniferum HOM05D001032 ORTHO05D000907 2.1e-17 93.6 248 40.7
Solyc10g078610.1 Solanum lycopersicum HOM05D001032 ORTHO05D000907 2.1e-17 93.6 209 36.8
Medtr6g029180 Medicago truncatula HOM05D001032 ORTHO05D000907 2.7e-17 93.2 238 41.6
Gohir.D13G214200 Gossypium hirsutum HOM05D001032 ORTHO05D000907 3.6e-17 92.8 202 34.2
Nitab4.5_0008487g0050 Nicotiana tabacum HOM05D001032 ORTHO05D000907 3.6e-17 92.8 187 38.0
TWI34G0671 Tripterygium wilfordii HOM05D001032 ORTHO05D000907 3.6e-17 92.8 199 43.7
Gohir.A13G210200 Gossypium hirsutum HOM05D001032 ORTHO05D000907 4.7e-17 92.4 202 34.2
Peaxi162Scf00003g04743 Petunia axillaris HOM05D001032 ORTHO05D000907 6.1e-17 92.0 71 64.8
Atru.chr3.2076 Acer truncatum HOM05D001032 ORTHO05D000907 7.9e-17 91.7 199 35.2
TWI60G1502 Tripterygium wilfordii HOM05D001032 ORTHO05D000907 1.4e-16 90.9 201 39.8
PGR102G2703 Punica granatum HOM05D001032 ORTHO05D000907 3.0e-16 89.7 197 35.0
Gorai.013G244500 Gossypium raimondii HOM05D001032 ORTHO05D000907 6.7e-16 88.6 198 33.8
PSO339G2965 Papaver somniferum HOM05D001032 ORTHO05D000907 6.7e-16 88.6 248 39.1
Glyma.02G072800 Glycine max HOM05D001032 ORTHO05D000907 8.8e-16 88.2 260 31.9
Lsat_1_v5_gn_6_52740 Lactuca sativa HOM05D001032 ORTHO05D000907 1.1e-15 87.8 207 36.2
Cc01_g00840 Coffea canephora HOM05D001032 ORTHO05D000907 1.5e-15 87.4 229 41.9
DCAR_001981 Daucus carota HOM05D001032 ORTHO05D000907 2.6e-15 86.7 199 34.2
Glyma.16G154100 Glycine max HOM05D001032 ORTHO05D000907 2.6e-15 86.7 265 32.5
ECA233G1236 Erigeron canadensis HOM05D001032 ORTHO05D000907 9.7e-15 84.7 209 33.0
CANSAT11G1064 Cannabis sativa HOM05D001032 ORTHO05D000907 1.3e-14 84.3 211 34.6
FAN25G0805 Fragaria x ananassa HOM05D001032 ORTHO05D000907 1.3e-14 84.3 203 34.0
FAN21G2620 Fragaria x ananassa HOM05D001032 ORTHO05D000907 1.7e-14 84.0 203 34.0
Rhsim13G0232200 Rhododendron simsii HOM05D001032 ORTHO05D000907 1.7e-14 84.0 205 33.2
FAN11G2765 Fragaria x ananassa HOM05D001032 ORTHO05D000907 2.8e-14 83.2 203 33.5
Actinidia00898 Actinidia chinensis HOM05D001032 ORTHO05D000907 3.7e-14 82.8 54 68.5
Oeu004744.1 Olea europaea HOM05D001032 ORTHO05D000907 3.7e-14 82.8 200 31.5
CAN.G1834.3 Capsicum annuum HOM05D001032 ORTHO05D000907 8.2e-14 81.6 201 37.3
FAN16G0602 Fragaria x ananassa HOM05D001032 ORTHO05D000907 1.1e-13 81.3 203 33.5
Migut.D02583 Erythranthe guttata HOM05D001032 ORTHO05D000907 2.4e-13 80.1 112 37.5
Migut.D02554 Erythranthe guttata HOM05D001032 ORTHO05D000907 4.1e-13 79.3 112 40.2
AUR62015277 Chenopodium quinoa HOM05D001032 ORTHO05D000907 5.3e-13 79.0 234 31.2
CiPaw.14G136100 Carya illinoinensis HOM05D001032 ORTHO05D000907 9.1e-13 78.2 197 32.5
Solyc01g005630.3 Solanum lycopersicum HOM05D001032 ORTHO05D000907 9.1e-13 78.2 203 35.5
Sopen01g001650 Solanum pennellii HOM05D001032 ORTHO05D000907 9.1e-13 78.2 114 43.9
AUR62032725 Chenopodium quinoa HOM05D001032 ORTHO05D000907 1.2e-12 77.8 234 32.9
EL10Ac3g06838 Beta vulgaris HOM05D001032 ORTHO05D000907 7.7e-12 75.1 234 26.9
PGSC0003DMG400023701 Solanum tuberosum HOM05D001032 ORTHO05D000907 1.3e-11 74.3 215 32.6
CAN.G128.60 Capsicum annuum HOM05D001032 ORTHO05D000907 2.9e-11 73.2 111 45.0
HPP92_010130 Vanilla planifolia HOM05D001032 ORTHO05D000907 5.0e-11 72.4 85 50.6
Oeu059666.1 Olea europaea HOM05D001032 ORTHO05D000907 1.9e-10 70.5 107 37.4
Sed0023810 Sechium edule HOM05D001032 ORTHO05D000907 1.2e-09 67.8 196 29.6
Zm00001eb325260 Zea mays HOM05D001032 ORTHO05D000907 1.6e-09 67.4 53 64.2
Zm00001eb107500 Zea mays HOM05D001032 ORTHO05D000907 4.7e-09 65.9 47 66.0
EL10Ac4g10382 Beta vulgaris HOM05D001032 ORTHO05D000907 6.1e-09 65.5 212 29.7
Os07g0575000 Oryza sativa ssp. japonica HOM05D001032 ORTHO05D000907 4.0e-08 62.8 63 52.4
Ah.04g161480 Amaranthus hybridus HOM05D001032 ORTHO05D000907 6.7e-08 62.0 213 31.0
CiPaw.13G176300 Carya illinoinensis HOM05D001032 ORTHO05D000907 1.5e-07 60.8 202 30.2
Solyc10g080650.3 Solanum lycopersicum HOM05D001032 ORTHO05D000907 4.4e-07 59.3 180 31.7
HPP92_017540 Vanilla planifolia HOM05D001032 ORTHO05D000907 1.7e-06 57.4 199 29.6
AUR62040909 Chenopodium quinoa HOM05D001032 ORTHO05D000907 4.8e-06 55.8 219 28.3
THA.LOC104799051 Tarenaya hassleriana HOM05D001032 ORTHO05D000907 8.2e-06 55.1 136 31.6


User provided reference genes

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