Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 5.2e-223 777.3 374 100.0
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 3.2e-172 608.6 373 78.0
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 1.4e-159 566.6 374 72.7
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 9.5e-132 474.2 374 61.5
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.2e-131 473.8 374 61.5
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.6e-131 473.4 374 61.8
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 2.8e-131 472.6 379 58.8
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 5.7e-129 464.9 379 58.0
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.7e-128 463.4 377 62.1
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 3.7e-128 462.2 377 62.1
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.9e-124 449.9 375 57.6
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 2.8e-123 446.0 375 57.1
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.0e-122 444.1 374 57.5
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 1.0e-122 444.1 378 56.1
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 1.8e-122 443.4 375 56.3
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 1.4e-119 433.7 356 56.7
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 2.0e-118 429.9 378 55.0
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 3.0e-117 426.0 374 55.6
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.8e-114 416.8 377 50.7
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 3.1e-114 416.0 359 56.5
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 3.4e-113 412.5 377 52.5
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 3.4e-113 412.5 356 55.6
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 1.2e-110 404.1 379 52.8
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 1.0e-109 401.0 376 50.5
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.1e-107 393.3 396 47.7
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.1e-107 393.3 378 50.5
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 6.4e-104 381.7 356 50.3
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 1.1e-103 380.9 377 51.5
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 2.4e-103 379.8 375 49.1
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 7.1e-103 378.3 379 48.3
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 6.0e-102 375.2 361 51.0
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.7e-101 373.6 359 47.6
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 3.9e-101 372.5 376 48.4
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 1.9e-100 370.2 359 47.6
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 5.6e-100 368.6 373 49.6
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 5.6e-100 368.6 359 47.6
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 2.4e-98 363.2 359 47.1
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 6.8e-98 361.7 377 47.5
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 8.9e-98 361.3 381 49.9
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 8.9e-98 361.3 381 48.8
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 1.5e-97 360.5 375 47.7
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 2.6e-97 359.8 380 50.3
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.6e-97 359.8 372 48.4
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 2.6e-97 359.8 372 48.4
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 5.8e-97 358.6 379 47.5
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 1.3e-96 357.5 359 46.2
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 4.9e-96 355.5 379 47.5
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 7.8e-94 348.2 376 48.7
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 1.0e-93 347.8 375 46.9
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 1.7e-93 347.1 376 46.3
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 4.7e-91 339.0 357 46.8
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 6.2e-91 338.6 375 45.3
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 3.1e-90 336.3 380 46.1
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.2e-89 334.3 360 48.1
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 1.3e-88 330.9 377 47.5
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 7.1e-87 325.1 377 46.9
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 4.6e-86 322.4 362 46.7
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 4.6e-86 322.4 359 44.0
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.0e-85 321.2 357 46.2
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 9.6e-84 314.7 237 63.3
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 1.8e-82 310.5 384 44.5
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 2.4e-82 310.1 387 44.2
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 4.0e-82 309.3 380 44.2
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 2.0e-81 307.0 360 43.9
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 7.6e-81 305.1 306 49.3
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 1.7e-80 303.9 359 45.4
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 1.4e-79 300.8 385 40.8
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 1.9e-79 300.4 380 42.9
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 5.4e-79 298.9 357 44.5
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.4e-79 298.9 357 44.5
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.6e-78 295.8 357 44.3
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 2.3e-77 293.5 357 44.5
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.0e-77 293.1 358 44.4
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 1.9e-76 290.4 436 39.4
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.3e-76 289.3 363 41.9
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 5.6e-76 288.9 365 44.1
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 4.8e-75 285.8 250 52.4
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 6.2e-75 285.4 373 42.9
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.8e-73 278.9 358 43.0
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.7e-72 277.3 334 42.2
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 2.2e-72 276.9 305 45.6
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 2.9e-72 276.6 331 42.0
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 7.1e-71 271.9 385 41.0
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 3.5e-70 269.6 360 41.1
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 1.0e-69 268.1 402 37.8
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 1.0e-69 268.1 235 56.2
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 3.0e-69 266.5 360 40.8
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 3.0e-69 266.5 308 44.2
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 3.9e-69 266.2 371 41.0
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.1e-68 264.6 377 39.0
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.5e-68 264.2 376 40.4
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 4.3e-68 262.7 364 39.8
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.1e-67 260.4 392 38.0
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 2.4e-66 256.9 349 40.4
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 3.1e-66 256.5 377 36.6
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 4.0e-66 256.1 372 39.0
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 6.9e-66 255.4 380 37.1
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 1.2e-65 254.6 357 38.7
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 4.5e-65 252.7 373 39.1
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 5.8e-65 252.3 357 39.2
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 7.6e-65 251.9 379 37.7
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 1.0e-64 251.5 349 39.3
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 6.5e-64 248.8 341 39.6
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 6.5e-64 248.8 384 37.0
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.1e-63 248.1 369 38.8
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.1e-63 248.1 369 38.8
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 1.9e-63 247.3 290 44.8
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 3.2e-63 246.5 349 38.4
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.1e-62 243.8 306 42.8
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 4.6e-62 242.7 352 38.9
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 6.0e-62 242.3 392 38.5
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 3.0e-61 240.0 241 48.5
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 8.7e-61 238.4 371 36.4
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.9e-60 237.3 340 37.6
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 1.9e-60 237.3 355 38.3
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 2.5e-60 236.9 346 38.7
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 2.5e-60 236.9 385 37.7
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 2.5e-60 236.9 383 36.3
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 3.3e-60 236.5 371 36.9
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 4.3e-60 236.1 353 36.0
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 7.4e-60 235.3 366 38.3
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 6.3e-59 232.3 287 41.8
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 6.9e-58 228.8 387 36.7
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 4.5e-57 226.1 276 42.8
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 1.4e-55 221.1 379 36.7
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 1.4e-55 221.1 379 36.7
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 1.9e-55 220.7 379 35.9
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.2e-55 219.9 384 36.7
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 3.2e-55 219.9 382 35.3
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 5.5e-55 219.2 386 37.0
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 2.7e-54 216.9 379 35.4
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 8.2e-51 205.3 375 35.5
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 4.1e-50 203.0 350 36.0
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 5.3e-50 202.6 377 35.5
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 6.9e-50 202.2 358 34.4
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 1.0e-48 198.4 390 32.1
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 2.9e-48 196.8 291 39.9
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 7.9e-46 188.7 192 48.4
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 1.8e-45 187.6 412 32.5
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.8e-42 177.6 202 45.0
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 3.2e-39 166.8 400 31.8
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 5.5e-39 166.0 368 31.2
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.8e-37 161.0 295 34.6
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.3e-35 154.8 136 52.2
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 2.8e-35 153.7 215 38.6
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.5e-33 146.4 120 52.5
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 5.0e-32 142.9 265 35.1
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 8.5e-32 142.1 200 42.0
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 5.5e-31 139.4 407 27.3
COL.COLO4_00261 Corchorus olitorius HOM05D004162 ORTHO05D004543 3.5e-17 93.6 45 97.8
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 4.2e-15 86.7 114 43.9
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 3.0e-13 80.5 58 63.8
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 6.8e-13 79.3 75 48.0
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 8.9e-13 79.0 117 38.5
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.0e-12 77.8 61 50.8
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 3.4e-12 77.0 350 23.4
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.4e-12 77.0 125 29.6
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 9.2e-10 68.9 63 49.2
CBR_g34767 Chara braunii HOM05D004162 ORTHO05D004543 1.3e-08 65.1 222 24.3
Lj1g0024684 Lotus japonicus HOM05D004162 ORTHO05D004543 3.9e-08 63.5 62 45.2


User provided reference genes

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