Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
COL.COLO4_04035 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.5e-134 482.3 272 100.0
COL.COLO4_03875 Corchorus olitorius HOM05D005109 ORTHO05D006084 2.5e-118 429.1 266 94.7
Thecc.01G257200 Theobroma cacao HOM05D005109 ORTHO05D006084 6.3e-77 291.6 263 70.0
Gohir.D08G208700 Gossypium hirsutum HOM05D005109 ORTHO05D006084 3.4e-70 269.2 263 62.4
Gohir.A08G190200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 1.3e-69 267.3 263 61.6
Duzib211G0434 Durio zibethinus HOM05D005109 ORTHO05D006084 8.3e-69 264.6 265 65.3
Duzib138G0302 Durio zibethinus HOM05D005109 ORTHO05D006084 1.1e-68 264.2 264 65.5
Gorai.004G221100 Gossypium raimondii HOM05D005109 ORTHO05D006084 3.1e-68 262.7 262 61.8
Duzib133G1173 Durio zibethinus HOM05D005109 ORTHO05D006084 1.5e-65 253.8 268 60.4
Gorai.007G146600 Gossypium raimondii HOM05D005109 ORTHO05D006084 3.3e-57 226.1 261 57.1
Gohir.D11G136900 Gossypium hirsutum HOM05D005109 ORTHO05D006084 6.2e-56 221.9 261 57.5
Gohir.A11G131200 Gossypium hirsutum HOM05D005109 ORTHO05D006084 2.9e-53 213.0 261 55.6
Ciclev10024128m.g Citrus clementina HOM05D005109 ORTHO05D006084 2.0e-51 206.8 299 48.8
Dinv34633 Davidia involucrata HOM05D005109 ORTHO05D006084 3.3e-49 199.5 264 51.5
Sabra02G0030500 Salix brachista HOM05D005109 ORTHO05D006084 3.6e-48 196.1 280 50.4
Potri.002G037800 Populus trichocarpa HOM05D005109 ORTHO05D006084 7.5e-46 188.3 287 48.4
GSVIVG01028346001 Vitis vinifera HOM05D005109 ORTHO05D006084 1.1e-44 184.5 263 50.2
Manes.13G034800 Manihot esculenta HOM05D005109 ORTHO05D006084 1.9e-44 183.7 268 48.5
Oeu063313.1 Olea europaea HOM05D005109 ORTHO05D006084 1.7e-42 177.2 269 45.7
Cpa.g.sc50.15 Carica papaya HOM05D005109 ORTHO05D006084 2.3e-42 176.8 282 47.5
TWI18G0717 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 9.5e-41 171.4 260 51.5
Cc01_g18260 Coffea canephora HOM05D005109 ORTHO05D006084 4.7e-40 169.1 266 45.9
Prupe.8G222600 Prunus persica HOM05D005109 ORTHO05D006084 4.7e-40 169.1 283 48.8
Sabra05G0173800 Salix brachista HOM05D005109 ORTHO05D006084 6.2e-40 168.7 249 50.2
RcHm_v2.0_Chr6g0287941 Rosa chinensis HOM05D005109 ORTHO05D006084 1.1e-39 167.9 298 44.6
CiPaw.03G265200 Carya illinoinensis HOM05D005109 ORTHO05D006084 1.8e-39 167.2 275 50.5
Manes.12G033000 Manihot esculenta HOM05D005109 ORTHO05D006084 5.2e-39 165.6 270 44.4
CSS0032892 Camellia sinensis var. sinensis HOM05D005109 ORTHO05D006084 2.0e-38 163.7 265 46.4
PSO832G0134 Papaver somniferum HOM05D005109 ORTHO05D006084 4.4e-38 162.5 275 46.9
QL09p039103 Quercus lobata HOM05D005109 ORTHO05D006084 4.4e-38 162.5 271 50.9
MBI10_g20266_MAGBIO Magnolia biondii HOM05D005109 ORTHO05D006084 7.6e-38 161.8 262 46.6
SalBow4G0920 Salvia bowleyana HOM05D005109 ORTHO05D006084 9.9e-38 161.4 274 44.5
CANSAT01G1854 Cannabis sativa HOM05D005109 ORTHO05D006084 2.2e-37 160.2 281 42.7
Cfa002435 Carpinus fangiana HOM05D005109 ORTHO05D006084 2.9e-37 159.8 282 47.9
FAN15G3301 Fragaria x ananassa HOM05D005109 ORTHO05D006084 2.9e-37 159.8 290 46.6
FAN24G2940 Fragaria x ananassa HOM05D005109 ORTHO05D006084 3.8e-37 159.5 291 46.4
DCAR_012551 Daucus carota HOM05D005109 ORTHO05D006084 8.4e-37 158.3 278 42.8
FvH4_2g21350 Fragaria vesca HOM05D005109 ORTHO05D006084 8.4e-37 158.3 291 46.0
Haze_24641 Corylus avellana HOM05D005109 ORTHO05D006084 1.1e-36 157.9 299 46.5
Potri.005G225200 Populus trichocarpa HOM05D005109 ORTHO05D006084 1.1e-36 157.9 252 48.0
PSO210G5198 Papaver somniferum HOM05D005109 ORTHO05D006084 1.9e-36 157.1 274 48.2
FAN20G2708 Fragaria x ananassa HOM05D005109 ORTHO05D006084 4.1e-36 156.0 287 47.0
Eucgr.B01549 Eucalyptus grandis HOM05D005109 ORTHO05D006084 9.2e-36 154.8 276 46.0
Nn1g02784 Nelumbo nucifera HOM05D005109 ORTHO05D006084 1.6e-35 154.1 271 49.1
Eucgr.G01947 Eucalyptus grandis HOM05D005109 ORTHO05D006084 2.1e-35 153.7 276 44.6
Migut.D00430 Erythranthe guttata HOM05D005109 ORTHO05D006084 3.5e-35 152.9 287 42.5
MD05G1196200 Malus domestica HOM05D005109 ORTHO05D006084 2.3e-34 150.2 287 44.6
MD10G1183500 Malus domestica HOM05D005109 ORTHO05D006084 3.0e-34 149.8 288 45.1
Lj5g0011614 Lotus japonicus HOM05D005109 ORTHO05D006084 5.1e-34 149.1 266 43.2
EL10As5g23493 Beta vulgaris HOM05D005109 ORTHO05D006084 6.6e-34 148.7 283 44.2
Hma1.2p1_0273F.1_g109610 Hydrangea macrophylla HOM05D005109 ORTHO05D006084 6.6e-34 148.7 270 42.6
TWI12G1013 Tripterygium wilfordii HOM05D005109 ORTHO05D006084 6.6e-34 148.7 261 48.7
CAN.G1147.5 Capsicum annuum HOM05D005109 ORTHO05D006084 8.6e-34 148.3 274 41.2
Actinidia30161 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.5e-33 147.5 248 47.2
Ah.11g049450 Amaranthus hybridus HOM05D005109 ORTHO05D006084 4.3e-33 146.0 261 44.8
AUR62011844 Chenopodium quinoa HOM05D005109 ORTHO05D006084 5.6e-33 145.6 263 41.4
VMungo0720G0144 Vigna mungo HOM05D005109 ORTHO05D006084 7.3e-33 145.2 271 41.3
Nitab4.5_0000470g0030 Nicotiana tabacum HOM05D005109 ORTHO05D006084 1.6e-32 144.1 267 41.6
Sopen09g028260 Solanum pennellii HOM05D005109 ORTHO05D006084 2.1e-32 143.7 272 40.1
PGSC0003DMG400010318 Solanum tuberosum HOM05D005109 ORTHO05D006084 6.2e-32 142.1 274 40.9
MELO3C012881.2 Cucumis melo HOM05D005109 ORTHO05D006084 1.1e-31 141.4 295 42.4
PGR031G1666 Punica granatum HOM05D005109 ORTHO05D006084 1.4e-31 141.0 267 42.7
ClCG07G001090 Citrullus lanatus HOM05D005109 ORTHO05D006084 2.4e-31 140.2 299 42.5
Peaxi162Scf01280g00016 Petunia axillaris HOM05D005109 ORTHO05D006084 3.1e-31 139.8 271 40.2
Actinidia09543 Actinidia chinensis HOM05D005109 ORTHO05D006084 8.9e-31 138.3 263 41.8
Glyma.10G037400 Glycine max HOM05D005109 ORTHO05D006084 8.9e-31 138.3 267 41.2
Sed0018169 Sechium edule HOM05D005109 ORTHO05D006084 8.9e-31 138.3 287 41.8
THA.LOC104826217 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 8.9e-31 138.3 273 41.0
Phvul.007G192400 Phaseolus vulgaris HOM05D005109 ORTHO05D006084 1.5e-30 137.5 270 40.0
ECA236G0222 Erigeron canadensis HOM05D005109 ORTHO05D006084 3.4e-30 136.3 267 41.9
Glyma.13G124000 Glycine max HOM05D005109 ORTHO05D006084 5.8e-30 135.6 268 42.5
Lalb_Chr02g0152441 Lupinus albus HOM05D005109 ORTHO05D006084 9.9e-30 134.8 281 44.1
Aqoxy5G00221 Aquilegia oxysepala HOM05D005109 ORTHO05D006084 1.3e-29 134.4 283 44.2
MSTRG.17494 Avicennia marina HOM05D005109 ORTHO05D006084 1.7e-29 134.0 284 39.8
CsaV3_3G022220 Cucumis sativus L. HOM05D005109 ORTHO05D006084 1.7e-29 134.0 297 42.1
HanXRQChr04g0110521 Helianthus annuus HOM05D005109 ORTHO05D006084 1.7e-29 134.0 265 41.1
Lalb_Chr21g0313891 Lupinus albus HOM05D005109 ORTHO05D006084 2.2e-29 133.7 283 42.8
TAR633G2233 Trochodendron aralioides HOM05D005109 ORTHO05D006084 2.9e-29 133.3 265 45.7
Ca_28090_v3 Cicer arietinum L. HOM05D005109 ORTHO05D006084 1.4e-28 131.0 268 41.4
Psat6g041760 Pisum sativum HOM05D005109 ORTHO05D006084 9.3e-28 128.3 261 42.5
arahy.Tifrunner.gnm1.ann1.A1W3C7 Arachis hypogaea HOM05D005109 ORTHO05D006084 1.6e-27 127.5 272 41.5
arahy.Tifrunner.gnm1.ann1.ZTJ4VR Arachis hypogaea HOM05D005109 ORTHO05D006084 1.6e-27 127.5 272 41.9
THA.LOC104800869 Tarenaya hassleriana HOM05D005109 ORTHO05D006084 1.6e-27 127.5 283 41.3
Migut.N02209 Erythranthe guttata HOM05D005109 ORTHO05D006084 2.7e-27 126.7 265 39.6
Solyc09g025260.4 Solanum lycopersicum HOM05D005109 ORTHO05D006084 3.5e-27 126.3 272 37.1
ATR0736G115 Amborella trichopoda HOM05D005109 ORTHO05D006084 4.6e-27 125.9 282 39.0
DCAR_018491 Daucus carota HOM05D005109 ORTHO05D006084 6.0e-27 125.6 252 40.5
A03p17410 Brassica napus HOM05D005109 ORTHO05D006084 1.3e-26 124.4 271 41.7
BraA03t11013Z Brassica rapa HOM05D005109 ORTHO05D006084 1.3e-26 124.4 271 41.7
Medtr1g069855 Medicago truncatula HOM05D005109 ORTHO05D006084 1.3e-26 124.4 269 39.4
TPR.G18473 Trifolium pratense HOM05D005109 ORTHO05D006084 6.6e-26 122.1 274 40.5
A10p04820 Brassica napus HOM05D005109 ORTHO05D006084 8.7e-26 121.7 292 39.0
BraA10t42751Z Brassica rapa HOM05D005109 ORTHO05D006084 8.7e-26 121.7 292 39.0
vmacro02668 Vaccinium macrocarpon HOM05D005109 ORTHO05D006084 8.7e-26 121.7 276 38.8
Lalb_Chr06g0170501 Lupinus albus HOM05D005109 ORTHO05D006084 1.3e-24 117.9 318 36.5
Sp1g05000 Schrenkiella parvula HOM05D005109 ORTHO05D006084 8.1e-24 115.2 284 38.0
AT1G06190 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 1.4e-23 114.4 298 39.6
BcaB02g06816 Brassica carinata HOM05D005109 ORTHO05D006084 1.4e-23 114.4 294 37.1
Sed0014438 Sechium edule HOM05D005109 ORTHO05D006084 1.4e-23 114.4 302 41.1
Zm00001eb258380 Zea mays HOM05D005109 ORTHO05D006084 2.4e-23 113.6 285 36.5
BcaC05g24297 Brassica carinata HOM05D005109 ORTHO05D006084 4.0e-23 112.8 277 39.0
C05p04510 Brassica napus HOM05D005109 ORTHO05D006084 4.0e-23 112.8 277 39.0
AL163U10030 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 5.3e-23 112.5 308 37.3
BcaC01g05975 Brassica carinata HOM05D005109 ORTHO05D006084 3.4e-22 109.8 270 40.4
C03p20550 Brassica napus HOM05D005109 ORTHO05D006084 3.4e-22 109.8 270 40.4
BolC3t14435H Brassica oleracea HOM05D005109 ORTHO05D006084 3.4e-22 109.8 270 40.4
CARHR124750 Cardamine hirsuta HOM05D005109 ORTHO05D006084 5.8e-22 109.0 283 40.3
BolC5t29222H Brassica oleracea HOM05D005109 ORTHO05D006084 1.7e-21 107.5 284 38.7
Glyma.03G163800 Glycine max HOM05D005109 ORTHO05D006084 1.7e-21 107.5 260 38.5
unitig_8.g3734 Utricularia gibba HOM05D005109 ORTHO05D006084 2.2e-21 107.1 262 38.9
Carub.0001s0555 Capsella rubella HOM05D005109 ORTHO05D006084 3.8e-21 106.3 302 37.7
SGA_v2.0_scaffold1G00618 Striga asiatica HOM05D003989 ORTHO05D004626 4.9e-21 105.9 267 37.8
AL4G26340 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 6.4e-21 105.5 301 38.2
Aa31LG5G5770 Aethionema arabicum HOM05D005109 ORTHO05D006084 8.4e-21 105.1 280 41.1
BcaC01g05971 Brassica carinata HOM05D005109 ORTHO05D006084 1.9e-20 104.0 270 38.9
C03p20590 Brassica napus HOM05D005109 ORTHO05D006084 1.9e-20 104.0 270 38.9
BolC3t14465H Brassica oleracea HOM05D005109 ORTHO05D006084 1.9e-20 104.0 270 38.9
Thhalv10007829m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 4.2e-20 102.8 286 36.4
Rhsim13G0035600 Rhododendron simsii HOM05D005109 ORTHO05D006084 4.2e-20 102.8 297 35.4
Rhsim01G0262800 Rhododendron simsii HOM05D005109 ORTHO05D006084 5.4e-20 102.4 222 38.3
HPP92_012858 Vanilla planifolia HOM05D005109 ORTHO05D006084 1.2e-19 101.3 259 34.0
Thhalv10016746m.g Eutrema salsugineum HOM05D005109 ORTHO05D006084 1.6e-19 100.9 284 39.1
CARHR005720 Cardamine hirsuta HOM05D005109 ORTHO05D006084 2.1e-19 100.5 304 39.8
Nitab4.5_0005001g0040 Nicotiana tabacum HOM05D005109 ORTHO05D006084 2.1e-19 100.5 225 37.8
SGA_v2.0_scaffold138G35226 Striga asiatica HOM05D003989 ORTHO05D004626 6.0e-19 99.0 267 36.0
Os03g0183100 Oryza sativa ssp. japonica HOM05D005109 ORTHO05D006084 7.9e-19 98.6 287 38.0
Glyma.19G165100 Glycine max HOM05D005109 ORTHO05D006084 3.0e-18 96.7 265 35.8
Sp4g13630 Schrenkiella parvula HOM05D005109 ORTHO05D006084 3.0e-18 96.7 282 37.9
Aa31LG1G7210 Aethionema arabicum HOM05D005109 ORTHO05D006084 5.6e-17 92.4 298 35.9
Sc17g0000590 Simmondsia chinensis HOM05D005109 ORTHO05D006084 4.0e-15 86.3 326 31.6
AL1G16170 Arabidopsis lyrata HOM05D005109 ORTHO05D006084 9.0e-15 85.1 276 35.9
Atru.chr5.1705 Acer truncatum HOM05D005109 ORTHO05D006084 1.5e-14 84.3 268 38.1
BcaB01g04060 Brassica carinata HOM05D005109 ORTHO05D006084 2.0e-14 84.0 274 37.2
Psat0s1200g0040 Pisum sativum HOM05D005109 ORTHO05D006084 9.9e-14 81.6 146 41.1
AT2G31150 Arabidopsis thaliana HOM05D005109 ORTHO05D006084 2.4e-12 77.0 167 38.3
Cpa.g.c44470 Carica papaya HOM05D005109 ORTHO05D006084 6.0e-11 72.4 154 40.9
Actinidia07301 Actinidia chinensis HOM05D005109 ORTHO05D006084 1.9e-09 67.4 99 49.5
Cc05_g01680 Coffea canephora HOM05D005109 ORTHO05D006084 4.8e-08 62.8 77 55.8


User provided reference genes

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